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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:abnormal pharyngeal arch morphology
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Accession:MP:0002884 term browser browse the term
Definition:any structural anomaly of the transient structures of the embryo that develop into regions of the head, neck and ears
Synonyms:exact_synonym: abnormal branchial arch morphology;   abnormal branchial arches;   abnormal pharyngeal arches



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abnormal pharyngeal arch morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:10192400 PMID:22319578 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Alg10b asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase) IEA MGI NCBI chr15:90,108,514...90,114,757
Ensembl chr15:90,108,514...90,117,674
JBrowse link
G Ankmy2 ankyrin repeat and MYND domain containing 2 IEA MGI NCBI chr12:36,207,123...36,247,290
Ensembl chr12:36,207,113...36,247,290
JBrowse link
G Arpc1a actin related protein 2/3 complex, subunit 1A IEA MGI NCBI chr 5:145,020,679...145,045,566
Ensembl chr 5:145,020,640...145,045,571
JBrowse link
G Ccm2 cerebral cavernous malformation 2 IAGP MGI PMID:19151728 NCBI chr11:6,496,887...6,546,761
Ensembl chr11:6,496,887...6,546,744
JBrowse link
G Cenpa centromere protein A IAGP MGI PMID:12906131 NCBI chr 5:30,824,214...30,832,181
Ensembl chr 5:30,824,121...30,832,174
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:33127760 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659
JBrowse link
G Chrd chordin IAGP MGI PMID:10688202 NCBI chr16:20,551,492...20,561,134
Ensembl chr16:20,551,877...20,561,134
JBrowse link
G Cpox coproporphyrinogen oxidase IAGP MGI PMID:28600349 NCBI chr16:58,490,571...58,500,754
Ensembl chr16:58,490,655...58,537,999
JBrowse link
G Csnk2a1 casein kinase 2, alpha 1 polypeptide IAGP MGI PMID:17954558 NCBI chr 2:152,067,851...152,123,772
Ensembl chr 2:152,068,759...152,123,772
JBrowse link
G Dlc1 deleted in liver cancer 1 IAGP MGI PMID:15710412 NCBI chr 8:37,034,893...37,420,343
Ensembl chr 8:37,034,905...37,420,297
JBrowse link
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:12434331 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085
JBrowse link
G Dsp desmoplakin IEA MGI NCBI chr13:38,335,270...38,382,553
Ensembl chr13:38,335,270...38,382,553
JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:25053435 PMID:33127760 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812
JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:19391113 NCBI chr14:104,052,051...104,083,248
Ensembl chr14:104,052,061...104,081,838
JBrowse link
G Eng endoglin IAGP MGI PMID:10562296 NCBI chr 2:32,536,607...32,572,681
Ensembl chr 2:32,536,607...32,572,681
JBrowse link
G Faf2 Fas associated factor family member 2 IEA MGI NCBI chr13:54,769,597...54,811,876
Ensembl chr13:54,769,597...54,811,876
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:16720880 PMID:17507393 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Folr1 folate receptor 1 (adult) IEA MGI NCBI chr 7:101,507,538...101,519,995
Ensembl chr 7:101,507,538...101,519,995
JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:9226455 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 IAGP MGI PMID:15569927 NCBI chr10:116,905,330...116,984,442
Ensembl chr10:116,905,332...116,984,439
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IAGP MGI PMID:6049666 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
JBrowse link
G Glmn glomulin, FKBP associated protein IEA MGI NCBI chr 5:107,696,828...107,745,754
Ensembl chr 5:107,696,833...107,745,754
JBrowse link
G Got2 glutamatic-oxaloacetic transaminase 2, mitochondrial IEA MGI NCBI chr 8:96,590,761...96,615,029
Ensembl chr 8:96,590,762...96,615,175
JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:9226455 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18029401 PMID:33127760 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:17420000 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 IAGP MGI PMID:25053435 NCBI chr11:57,719,539...57,722,973
Ensembl chr11:57,719,531...57,723,644
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IAGP MGI PMID:14659802 NCBI chr12:73,948,098...73,994,328
Ensembl chr12:73,948,149...73,994,304
JBrowse link
G Hira histone cell cycle regulator IAGP MGI PMID:11884616 NCBI chr16:18,695,500...18,789,059
Ensembl chr16:18,695,787...18,789,059
JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:1673020 NCBI chr 6:52,146,039...52,190,047
Ensembl chr 6:52,146,042...52,190,316
JBrowse link
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 IAGP MGI PMID:20185768 NCBI chr 1:169,777,104...169,796,913
Ensembl chr 1:169,777,104...169,796,810
JBrowse link
G Ift172 intraflagellar transport 172 IEA MGI NCBI chr 5:31,410,623...31,448,458
Ensembl chr 5:31,410,621...31,448,460
JBrowse link
G Ift43 intraflagellar transport 43 IEA MGI NCBI chr12:86,129,335...86,209,233
Ensembl chr12:86,129,315...86,209,233
JBrowse link
G Ift88 intraflagellar transport 88 IAGP MGI PMID:10804177 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393
JBrowse link
G Ipo9 importin 9 IEA MGI NCBI chr 1:135,310,050...135,358,260
Ensembl chr 1:135,310,050...135,358,237
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IAGP MGI PMID:14667410 NCBI chr13:116,434,806...116,446,224
Ensembl chr13:116,434,817...116,446,225
JBrowse link
G Itgb1 integrin beta 1 (fibronectin receptor beta) IAGP MGI PMID:12620989 NCBI chr 8:129,412,135...129,460,060
Ensembl chr 8:129,412,135...129,459,681
JBrowse link
G Krit1 KRIT1, ankyrin repeat containing IEA MGI NCBI chr 5:3,853,156...3,894,515
Ensembl chr 5:3,853,184...3,895,564
JBrowse link
G Lats2 large tumor suppressor 2 IAGP MGI PMID:17478426 NCBI chr14:57,927,119...57,983,669
Ensembl chr14:57,927,119...57,995,845
Ensembl chr14:57,927,119...57,995,845
JBrowse link
G Maml1 mastermind like transcriptional coactivator 1 IAGP MGI PMID:22069191 NCBI chr11:50,146,458...50,183,955
Ensembl chr11:50,146,461...50,183,138
JBrowse link
G Maml3 mastermind like transcriptional coactivator 3 IAGP MGI PMID:22069191 NCBI chr 3:51,595,032...52,012,740
Ensembl chr 3:51,593,328...52,012,497
JBrowse link
G Mecom MDS1 and EVI1 complex locus IAGP MGI PMID:9256345 NCBI chr 3:30,005,445...30,563,937
Ensembl chr 3:30,005,445...30,602,157
JBrowse link
G Med12 mediator complex subunit 12 IAGP MGI PMID:20630950 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071
JBrowse link
G Mef2c myocyte enhancer factor 2C IAGP MGI PMID:17420000 NCBI chr13:83,652,136...83,815,198
Ensembl chr13:83,652,153...83,815,199
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Nf1 neurofibromin 1 IAGP MGI PMID:7477259 NCBI chr11:79,223,541...79,472,435
Ensembl chr11:79,230,519...79,472,438
JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:16720880 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983
JBrowse link
G Nog noggin IEA MGI NCBI chr11:89,191,464...89,193,385
Ensembl chr11:89,191,464...89,193,158
JBrowse link
G Nr6a1 nuclear receptor subfamily 6, group A, member 1 IEA MGI NCBI chr 2:38,613,381...38,816,473
Ensembl chr 2:38,613,382...38,817,700
JBrowse link
G Nsmce2 NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase IEA MGI NCBI chr15:59,246,047...59,473,538
Ensembl chr15:59,246,096...59,473,533
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IAGP MGI PMID:20652258 NCBI chr16:29,398,099...29,481,924
Ensembl chr16:29,398,152...29,473,702
JBrowse link
G Pcgf1 polycomb group ring finger 1 IEA MGI NCBI chr 6:83,054,173...83,057,836
Ensembl chr 6:83,054,850...83,057,836
JBrowse link
G Pcnp PEST proteolytic signal containing nuclear protein IEA MGI NCBI chr16:55,835,870...55,851,590
Ensembl chr16:55,827,608...55,850,102
JBrowse link
G Pdhb pyruvate dehydrogenase (lipoamide) beta IEA MGI NCBI chr14:14,296,470...14,303,782
Ensembl chr14:14,296,748...14,303,777
JBrowse link
G Pigq phosphatidylinositol glycan anchor biosynthesis, class Q IEA MGI NCBI chr17:26,145,394...26,161,855
Ensembl chr17:26,145,395...26,163,910
JBrowse link
G Por cytochrome p450 oxidoreductase IAGP MGI PMID:11742006 NCBI chr 5:135,698,894...135,764,180
Ensembl chr 5:135,698,887...135,764,180
JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain IAGP MGI PMID:15750184 NCBI chr10:44,313,170...44,404,548
Ensembl chr10:44,313,173...44,404,497
JBrowse link
G Psmg1 proteasome (prosome, macropain) assembly chaperone 1 IEA MGI NCBI chr16:95,781,133...95,792,160
Ensembl chr16:95,781,133...95,792,160
JBrowse link
G Rad17 RAD17 checkpoint clamp loader component IAGP MGI PMID:15297881 NCBI chr13:100,753,672...100,787,569
Ensembl chr13:100,753,672...100,787,559
JBrowse link
G Rad9a RAD9 checkpoint clamp component A IEA MGI NCBI chr19:4,245,195...4,251,710
Ensembl chr19:4,245,195...4,251,661
JBrowse link
G Ranbp1 RAN binding protein 1 IAGP MGI PMID:25452572 NCBI chr16:18,057,843...18,066,558
Ensembl chr16:18,057,648...18,066,596
JBrowse link
G Rasa1 RAS p21 protein activator 1 IAGP MGI PMID:7477259 NCBI chr13:85,362,818...85,437,605
Ensembl chr13:85,362,899...85,437,249
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:21305688 PMID:21930923 PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Sfmbt2 Scm-like with four mbt domains 2 IEA MGI NCBI chr 2:10,375,251...10,600,064
Ensembl chr 2:10,375,321...10,600,064
JBrowse link
G Slc30a9 solute carrier family 30 (zinc transporter), member 9 IEA MGI NCBI chr 5:67,464,298...67,513,485
Ensembl chr 5:67,464,298...67,515,786
JBrowse link
G Slc8a1 solute carrier family 8 (sodium/calcium exchanger), member 1 IAGP MGI PMID:21302256 NCBI chr17:81,680,534...82,045,816
Ensembl chr17:81,680,534...82,045,806
JBrowse link
G Smad1 SMAD family member 1 IAGP MGI PMID:15198985 NCBI chr 8:80,065,024...80,126,057
Ensembl chr 8:80,065,024...80,126,147
JBrowse link
G Smad5 SMAD family member 5 IAGP MGI PMID:10079226 NCBI chr13:56,850,804...56,890,191
Ensembl chr13:56,850,823...56,890,190
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:11242110 PMID:15175244 PMID:15652707 PMID:16696966 More... NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Tbx20 T-box 20 IEA MGI NCBI chr 9:24,632,108...24,685,599
Ensembl chr 9:24,629,434...24,685,599
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:18029401 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428
JBrowse link
G Tmem70 transmembrane protein 70 IEA MGI NCBI chr 1:16,735,415...16,748,501
Ensembl chr 1:16,735,431...16,748,499
JBrowse link
G Ube2f ubiquitin-conjugating enzyme E2F (putative) IEA MGI NCBI chr 1:91,177,412...91,214,243
Ensembl chr 1:91,178,026...91,218,059
JBrowse link
G Uggt1 UDP-glucose glycoprotein glucosyltransferase 1 IEA MGI NCBI chr 1:36,179,109...36,283,407
Ensembl chr 1:36,179,108...36,283,801
JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:8602242 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor IAGP MGI PMID:9651579 NCBI chr 6:113,600,955...113,608,595
Ensembl chr 6:113,600,920...113,608,594
JBrowse link
abnormal first pharyngeal arch artery morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccm2 cerebral cavernous malformation 2 IAGP MGI PMID:19151728 NCBI chr11:6,496,887...6,546,761
Ensembl chr11:6,496,887...6,546,744
JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:9226455 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889
JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:9226455 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:9171826 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668
JBrowse link
G Kat7 K(lysine) acetyltransferase 7 IAGP MGI PMID:21149574 NCBI chr11:95,162,679...95,201,085
Ensembl chr11:95,165,085...95,201,072
JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:34615475 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
JBrowse link
G Nrp1 neuropilin 1 IAGP MGI PMID:10518505 NCBI chr 8:129,085,072...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
abnormal first pharyngeal arch morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:22319578 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Arid1a AT rich interactive domain 1A (SWI-like) IAGP MGI PMID:26806701 NCBI chr 4:133,406,319...133,484,682
Ensembl chr 4:133,406,319...133,484,080
JBrowse link
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:11290297 NCBI chr 2:18,681,829...18,691,440
Ensembl chr 2:18,681,829...18,691,440
JBrowse link
G Ccm2 cerebral cavernous malformation 2 IAGP MGI PMID:19151728 NCBI chr11:6,496,887...6,546,761
Ensembl chr11:6,496,887...6,546,744
JBrowse link
G Dicer1 dicer 1, ribonuclease type III IAGP MGI PMID:21098571 NCBI chr12:104,653,999...104,718,227
Ensembl chr12:104,654,001...104,718,211
JBrowse link
G Disp1 dispatched RND transporter family member 1 IAGP MGI PMID:12372301 NCBI chr 1:182,867,828...183,010,257
Ensembl chr 1:182,867,830...183,003,086
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 IAGP MGI PMID:17127040 NCBI chr19:30,523,276...30,526,896
Ensembl chr19:30,523,263...30,527,065
JBrowse link
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:12112878 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085
JBrowse link
G Dlx6 distal-less homeobox 6 IAGP MGI PMID:12112878 PMID:12434331 NCBI chr 6:6,863,334...6,867,970
Ensembl chr 6:6,863,334...6,868,568
JBrowse link
G Edn1 endothelin 1 IAGP MGI PMID:8152482 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466
JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9449664 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Fbxl19 F-box and leucine-rich repeat protein 19 IAGP MGI PMID:29809150 NCBI chr 7:127,343,059...127,368,655
Ensembl chr 7:127,343,715...127,368,655
JBrowse link
G Fgf16 fibroblast growth factor 16 IAGP MGI PMID:18565327 NCBI chr  X:104,808,083...104,820,138
Ensembl chr  X:104,807,885...104,818,545
JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:9226455 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889
JBrowse link
G Gata3 GATA binding protein 3 IAGP MGI PMID:34383890 NCBI chr 2:9,861,889...9,892,762
Ensembl chr 2:9,861,889...9,894,845
JBrowse link
G Gdf1 growth differentiation factor 1 IAGP MGI PMID:16564040 NCBI chr 8:70,768,425...70,784,242
Ensembl chr 8:70,768,425...70,784,242
Ensembl chr 8:70,768,425...70,784,242
JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:9226455 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:21098571 PMID:26806701 PMID:33155500 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:19211672 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668
JBrowse link
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:10804184 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179
JBrowse link
G Itgb1 integrin beta 1 (fibronectin receptor beta) IAGP MGI PMID:9553049 NCBI chr 8:129,412,135...129,460,060
Ensembl chr 8:129,412,135...129,459,681
JBrowse link
G Kcnh2 potassium voltage-gated channel, subfamily H (eag-related), member 2 IAGP MGI PMID:18948620 NCBI chr 5:24,524,583...24,556,671
Ensembl chr 5:24,524,587...24,556,602
JBrowse link
G Med12 mediator complex subunit 12 IAGP MGI PMID:20630950 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071
JBrowse link
G Med23 mediator complex subunit 23 IAGP MGI PMID:33155500 NCBI chr10:24,745,884...24,789,427
Ensembl chr10:24,745,884...24,789,579
JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like IAGP MGI PMID:23267094 NCBI chr10:3,918,282...4,117,081
Ensembl chr10:3,923,118...4,117,081
JBrowse link
G Ncstn nicastrin IAGP MGI PMID:16626651 NCBI chr 1:171,893,580...171,910,356
Ensembl chr 1:171,893,580...171,910,362
JBrowse link
G Nodal nodal IAGP MGI PMID:16564040 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117
JBrowse link
G Nubp2 nucleotide binding protein 2 IAGP MGI PMID:31733190 NCBI chr17:25,101,585...25,105,423
Ensembl chr17:25,101,585...25,105,323
JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:9811592 PMID:11532921 PMID:11731460 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276
JBrowse link
G Pcgf2 polycomb group ring finger 2 IAGP MGI PMID:11290297 NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323
JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase 1 IAGP MGI PMID:15116068 NCBI chr17:24,292,654...24,370,957
Ensembl chr17:24,292,654...24,369,898
JBrowse link
G Phc1 polyhomeotic 1 IAGP MGI PMID:16024804 NCBI chr 6:122,294,690...122,317,946
Ensembl chr 6:122,294,690...122,317,520
JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674
JBrowse link
G Ranbp1 RAN binding protein 1 IAGP MGI PMID:25452572 NCBI chr16:18,057,843...18,066,558
Ensembl chr16:18,057,648...18,066,596
JBrowse link
G Rasa1 RAS p21 protein activator 1 IAGP MGI PMID:7477259 NCBI chr13:85,362,818...85,437,605
Ensembl chr13:85,362,899...85,437,249
JBrowse link
G Satb2 special AT-rich sequence binding protein 2 IAGP MGI PMID:16751105 NCBI chr 1:56,833,140...57,019,407
Ensembl chr 1:56,833,140...57,017,809
JBrowse link
G Smo smoothened, frizzled class receptor IAGP MGI PMID:12372301 NCBI chr 6:29,735,496...29,761,365
Ensembl chr 6:29,735,502...29,761,364
JBrowse link
G Ttn titin IAGP MGI PMID:15136139 NCBI chr 2:76,534,324...76,812,901
Ensembl chr 2:76,534,324...76,812,891
JBrowse link
abnormal fourth pharyngeal arch artery morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT rich interactive domain 1A (SWI-like) IAGP MGI PMID:26806701 NCBI chr 4:133,406,319...133,484,682
Ensembl chr 4:133,406,319...133,484,080
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:19855134 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659
JBrowse link
G Ece1 endothelin converting enzyme 1 IAGP MGI PMID:9649553 NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540
JBrowse link
G Edn1 endothelin 1 IAGP MGI PMID:7615798 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466
JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9649553 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,235...118,929,109
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:12223416 PMID:14623825 PMID:19855134 PMID:20035084 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:10479458 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459
JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:9409679 PMID:10479458 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
JBrowse link
G Gbx2 gastrulation brain homeobox 2 IAGP MGI PMID:15996652 NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:16332365 PMID:19855134 PMID:26806701 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:14623825 NCBI chr 6:52,146,039...52,190,047
Ensembl chr 6:52,146,042...52,190,316
JBrowse link
G Kat6a K(lysine) acetyltransferase 6A IAGP MGI PMID:22921202 NCBI chr 8:23,349,458...23,433,275
Ensembl chr 8:23,349,551...23,433,275
JBrowse link
G Ltbp1 latent transforming growth factor beta binding protein 1 IAGP MGI PMID:17804598 NCBI chr17:75,312,475...75,699,507
Ensembl chr17:75,312,563...75,699,507
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:19855134 PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Mrtfb myocardin related transcription factor B IAGP MGI PMID:16204380 NCBI chr16:13,073,913...13,235,393
Ensembl chr16:13,074,345...13,235,393
JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:34615475 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
JBrowse link
G Nrp1 neuropilin 1 IAGP MGI PMID:10518505 NCBI chr 8:129,085,072...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
G Plxnd1 plexin D1 IAGP MGI PMID:15239958 NCBI chr 6:115,931,772...115,972,300
Ensembl chr 6:115,931,772...115,971,966
JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607068 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768
JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607068 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924
JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607068 NCBI chr15:102,143,373...102,165,957
Ensembl chr15:102,143,373...102,165,952
JBrowse link
G Smad7 SMAD family member 7 IAGP MGI PMID:23011393 NCBI chr18:75,500,436...75,529,006
Ensembl chr18:75,500,600...75,529,006
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:11242110 PMID:12223416 PMID:12858556 PMID:23011393 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:16332365 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428
JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:12539040 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295
JBrowse link
abnormal fourth pharyngeal arch morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa3 homeobox A3 IAGP MGI PMID:1673020 NCBI chr 6:52,146,039...52,190,047
Ensembl chr 6:52,146,042...52,190,316
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Ripply3 ripply transcriptional repressor 3 IAGP MGI PMID:21177346 NCBI chr16:94,129,281...94,137,794
Ensembl chr16:94,129,279...94,137,794
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 PMID:12858556 PMID:16914493 PMID:21177346 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
abnormal pharyngeal arch artery morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 IAGP MGI PMID:15226263 NCBI chr 2:58,336,450...58,456,840
Ensembl chr 2:58,278,656...58,457,169
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:12563036 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Bmp2 bone morphogenetic protein 2 IAGP MGI PMID:12464426 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805
JBrowse link
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:15070745 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126
JBrowse link
G Ccm2 cerebral cavernous malformation 2 IAGP MGI PMID:19151728 PMID:22898778 NCBI chr11:6,496,887...6,546,761
Ensembl chr11:6,496,887...6,546,744
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:19855134 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659
JBrowse link
G Chrd chordin IAGP MGI PMID:19247433 NCBI chr16:20,551,492...20,561,134
Ensembl chr16:20,551,877...20,561,134
JBrowse link
G Edn1 endothelin 1 IAGP MGI PMID:7615798 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466
JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9649553 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,235...118,929,109
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 PMID:15996652 PMID:20035084 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:10479458 PMID:11562355 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459
JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:10479458 PMID:11562355 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
JBrowse link
G Foxh1 forkhead box H1 IAGP MGI PMID:15363409 NCBI chr15:76,552,029...76,554,286
Ensembl chr15:76,552,425...76,554,148
JBrowse link
G Gbx2 gastrulation brain homeobox 2 IAGP MGI PMID:15996652 NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15226263 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:9171826 PMID:20386744 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668
JBrowse link
G Hdac7 histone deacetylase 7 IAGP MGI PMID:16873063 NCBI chr15:97,690,542...97,742,383
Ensembl chr15:97,690,545...97,742,383
JBrowse link
G Heg1 heart development protein with EGF-like domains 1 IAGP MGI PMID:22898778 NCBI chr16:33,504,754...33,591,946
Ensembl chr16:33,504,740...33,591,946
JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:14623825 NCBI chr 6:52,146,039...52,190,047
Ensembl chr 6:52,146,042...52,190,316
JBrowse link
G Krit1 KRIT1, ankyrin repeat containing IAGP MGI PMID:24990152 NCBI chr 5:3,853,156...3,894,515
Ensembl chr 5:3,853,184...3,895,564
JBrowse link
G Map3k7 mitogen-activated protein kinase kinase kinase 7 IAGP MGI PMID:16556914 NCBI chr 4:31,963,659...32,023,470
Ensembl chr 4:31,964,097...32,023,467
JBrowse link
G Mef2c myocyte enhancer factor 2C IAGP MGI PMID:9778514 NCBI chr13:83,652,136...83,815,198
Ensembl chr13:83,652,153...83,815,199
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Mrtfb myocardin related transcription factor B IAGP MGI PMID:15951419 PMID:16204380 NCBI chr16:13,073,913...13,235,393
Ensembl chr16:13,074,345...13,235,393
JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:34615475 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:15070745 PMID:15175244 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983
JBrowse link
G Nrp1 neuropilin 1 IAGP MGI PMID:10518505 NCBI chr 8:129,085,072...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Pax3 paired box 3 IAGP MGI PMID:2619088 NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 IAGP MGI PMID:12397115 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240
JBrowse link
G Rxra retinoid X receptor alpha IAGP MGI PMID:19255444 NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969
JBrowse link
G Smad7 SMAD family member 7 IAGP MGI PMID:23011393 NCBI chr18:75,500,436...75,529,006
Ensembl chr18:75,500,600...75,529,006
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:11242110 PMID:12464426 PMID:15175244 PMID:16914493 More... NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:12539040 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295
JBrowse link
G Vezf1 vascular endothelial zinc finger 1 IAGP MGI PMID:15882861 NCBI chr11:87,958,580...87,975,555
Ensembl chr11:87,959,105...87,975,555
JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 IAGP MGI PMID:17967885 NCBI chr14:25,458,299...25,667,167
Ensembl chr14:25,459,609...25,667,167
JBrowse link
abnormal pharyngeal arch mesenchyme morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:16720880 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:18058916 PMID:24700590 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hprt hypoxanthine guanine phosphoribosyl transferase IAGP MGI PMID:18058916 NCBI chr  X:52,076,955...52,110,537
Ensembl chr  X:52,077,014...52,110,536
JBrowse link
G Mau2 MAU2 sister chromatid cohesion factor IAGP MGI PMID:24700590 NCBI chr 8:70,465,896...70,495,384
Ensembl chr 8:70,468,773...70,495,384
JBrowse link
G Nipbl NIPBL cohesin loading factor IAGP MGI PMID:24700590 NCBI chr15:8,319,308...8,494,799
Ensembl chr15:8,320,101...8,473,947
JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:16720880 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983
JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain IAGP MGI PMID:15750184 NCBI chr10:44,313,170...44,404,548
Ensembl chr10:44,313,173...44,404,497
JBrowse link
G Rspo2 R-spondin 2 IAGP MGI PMID:21237142 NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 IAGP MGI PMID:20596238 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573
JBrowse link
G Sox4 SRY (sex determining region Y)-box 4 IAGP MGI PMID:20596238 NCBI chr13:29,132,902...29,137,682
Ensembl chr13:29,132,902...29,137,696
JBrowse link
abnormal second pharyngeal arch artery morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccm2 cerebral cavernous malformation 2 IAGP MGI PMID:19151728 NCBI chr11:6,496,887...6,546,761
Ensembl chr11:6,496,887...6,546,744
JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:34615475 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
JBrowse link
G Nrp1 neuropilin 1 IAGP MGI PMID:10518505 NCBI chr 8:129,085,072...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:21305688 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Ripply3 ripply transcriptional repressor 3 IAGP MGI PMID:21177346 NCBI chr16:94,129,281...94,137,794
Ensembl chr16:94,129,279...94,137,794
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
abnormal second pharyngeal arch morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmi1 Bmi1 polycomb ring finger oncogene IAGP MGI PMID:11290297 NCBI chr 2:18,681,829...18,691,440
Ensembl chr 2:18,681,829...18,691,440
JBrowse link
G Ccm2 cerebral cavernous malformation 2 IAGP MGI PMID:19151728 NCBI chr11:6,496,887...6,546,761
Ensembl chr11:6,496,887...6,546,744
JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:11163240 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:12514106 NCBI chr 8:26,008,775...26,065,734
Ensembl chr 8:26,003,670...26,065,734
JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:9226455 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889
JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:9226455 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:12514106 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Kdr kinase insert domain protein receptor IAGP MGI PMID:21305688 NCBI chr 5:76,093,487...76,139,885
Ensembl chr 5:76,093,487...76,139,118
JBrowse link
G Pbx1 pre B cell leukemia homeobox 1 IAGP MGI PMID:11566859 NCBI chr 1:167,946,933...168,259,898
Ensembl chr 1:167,946,933...168,259,839
JBrowse link
G Pcgf2 polycomb group ring finger 2 IAGP MGI PMID:11290297 NCBI chr11:97,579,647...97,593,260
Ensembl chr11:97,579,649...97,591,323
JBrowse link
G Phc1 polyhomeotic 1 IAGP MGI PMID:16024804 NCBI chr 6:122,294,690...122,317,946
Ensembl chr 6:122,294,690...122,317,520
JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674
JBrowse link
G Ranbp1 RAN binding protein 1 IAGP MGI PMID:25452572 NCBI chr16:18,057,843...18,066,558
Ensembl chr16:18,057,648...18,066,596
JBrowse link
abnormal sixth pharyngeal arch artery morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 IAGP MGI PMID:15226263 NCBI chr 2:58,336,450...58,456,840
Ensembl chr 2:58,278,656...58,457,169
JBrowse link
G Arid1a AT rich interactive domain 1A (SWI-like) IAGP MGI PMID:26806701 NCBI chr 4:133,406,319...133,484,682
Ensembl chr 4:133,406,319...133,484,080
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:19855134 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659
JBrowse link
G Ece1 endothelin converting enzyme 1 IAGP MGI PMID:9649553 NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540
JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9649553 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,235...118,929,109
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:20035084 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15226263 PMID:26806701 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IAGP MGI PMID:16687132 NCBI chr13:116,434,806...116,446,224
Ensembl chr13:116,434,817...116,446,225
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:19855134 PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Mrtfb myocardin related transcription factor B IAGP MGI PMID:16204380 NCBI chr16:13,073,913...13,235,393
Ensembl chr16:13,074,345...13,235,393
JBrowse link
G Nrp1 neuropilin 1 IAGP MGI PMID:10518505 NCBI chr 8:129,085,072...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Pax3 paired box 3 IAGP MGI PMID:2619088 NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 IAGP MGI PMID:17994097 NCBI chr 3:128,993,527...129,013,243
Ensembl chr 3:128,993,527...129,013,240
JBrowse link
G Plxnd1 plexin D1 IAGP MGI PMID:15239958 NCBI chr 6:115,931,772...115,972,300
Ensembl chr 6:115,931,772...115,971,966
JBrowse link
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607068 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768
JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607068 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924
JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607068 NCBI chr15:102,143,373...102,165,957
Ensembl chr15:102,143,373...102,165,952
JBrowse link
G Smo smoothened, frizzled class receptor IAGP MGI PMID:16687132 NCBI chr 6:29,735,496...29,761,365
Ensembl chr 6:29,735,502...29,761,364
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:12539040 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295
JBrowse link
abnormal sixth pharyngeal arch morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16914493 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
abnormal third pharyngeal arch artery morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 IAGP MGI PMID:15226263 NCBI chr 2:58,336,450...58,456,840
Ensembl chr 2:58,278,656...58,457,169
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:12563036 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Arid1a AT rich interactive domain 1A (SWI-like) IAGP MGI PMID:26806701 NCBI chr 4:133,406,319...133,484,682
Ensembl chr 4:133,406,319...133,484,080
JBrowse link
G Ccm2 cerebral cavernous malformation 2 IAGP MGI PMID:19151728 NCBI chr11:6,496,887...6,546,761
Ensembl chr11:6,496,887...6,546,744
JBrowse link
G Ece1 endothelin converting enzyme 1 IAGP MGI PMID:9649553 NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540
JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9649553 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,235...118,929,109
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:20035084 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:9409679 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15226263 PMID:26806701 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:34615475 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
JBrowse link
G Nrp1 neuropilin 1 IAGP MGI PMID:10518505 NCBI chr 8:129,085,072...129,231,957
Ensembl chr 8:129,085,085...129,229,844
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:12539040 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295
JBrowse link
abnormal third pharyngeal arch morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccm2 cerebral cavernous malformation 2 IAGP MGI PMID:19151728 NCBI chr11:6,496,887...6,546,761
Ensembl chr11:6,496,887...6,546,744
JBrowse link
G Gcm2 glial cells missing homolog 2 IAGP MGI PMID:17382312 NCBI chr13:41,254,903...41,264,511
Ensembl chr13:41,254,903...41,264,511
JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain IAGP MGI PMID:15750184 NCBI chr10:44,313,170...44,404,548
Ensembl chr10:44,313,173...44,404,497
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:21305688 PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Ripply3 ripply transcriptional repressor 3 IAGP MGI PMID:21177346 NCBI chr16:94,129,281...94,137,794
Ensembl chr16:94,129,279...94,137,794
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 PMID:16914493 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
absent first pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor 1 (adult) IAGP MGI PMID:10508523 NCBI chr 7:101,507,538...101,519,995
Ensembl chr 7:101,507,538...101,519,995
JBrowse link
G Stk11 serine/threonine kinase 11 IAGP MGI PMID:11509733 NCBI chr10:79,951,602...79,966,513
Ensembl chr10:79,951,637...79,966,516
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 IAGP MGI PMID:12522767 NCBI chr 2:44,873,524...45,007,454
Ensembl chr 2:44,873,644...45,007,407
JBrowse link
absent fourth pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:21305688 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Kdr kinase insert domain protein receptor IAGP MGI PMID:21305688 NCBI chr 5:76,093,487...76,139,885
Ensembl chr 5:76,093,487...76,139,118
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Ptch1 patched 1 IAGP MGI PMID:21305688 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:21305688 PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:16914493 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
absent fourth pharyngeal arch artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:19855134 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:15175244 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
G Ripply3 ripply transcriptional repressor 3 IAGP MGI PMID:21177346 NCBI chr16:94,129,281...94,137,794
Ensembl chr16:94,129,279...94,137,794
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:15175244 PMID:16914493 PMID:19855134 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
absent pharyngeal arch arteries term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:21305688 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:11163240 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IAGP MGI PMID:9436976 NCBI chr12:73,948,098...73,994,328
Ensembl chr12:73,948,149...73,994,304
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16696966 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
absent pharyngeal arches term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:22319578 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Chrd chordin IAGP MGI PMID:12810603 NCBI chr16:20,551,492...20,561,134
Ensembl chr16:20,551,877...20,561,134
JBrowse link
G Elp1 elongator complex protein 1 IAGP MGI PMID:19015235 NCBI chr 4:56,746,547...56,802,565
Ensembl chr 4:56,749,680...56,802,331
JBrowse link
G Foxi3 forkhead box I3 IAGP MGI PMID:24650709 NCBI chr 6:70,933,590...70,938,050
Ensembl chr 6:70,933,515...70,938,050
JBrowse link
G Gbx2 gastrulation brain homeobox 2 IAGP MGI PMID:11731459 NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:26774483 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:9671575 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668
JBrowse link
G Otx2 orthodenticle homeobox 2 IAGP MGI PMID:7588062 PMID:11731459 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276
JBrowse link
G Ovol2 ovo like zinc finger 2 IAGP MGI PMID:17573777 NCBI chr 2:144,147,095...144,174,000
Ensembl chr 2:144,147,095...144,174,066
JBrowse link
G Pdpk1 3-phosphoinositide dependent protein kinase 1 IAGP MGI PMID:12110585 NCBI chr17:24,292,654...24,370,957
Ensembl chr17:24,292,654...24,369,898
JBrowse link
G Pkn2 protein kinase N2 IAGP MGI PMID:26774483 NCBI chr 3:142,496,663...142,587,765
Ensembl chr 3:142,496,663...142,587,765
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:17473173 PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11971873 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
absent second pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:11959834 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:11163240 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242
JBrowse link
G Elp1 elongator complex protein 1 IAGP MGI PMID:22046433 NCBI chr 4:56,746,547...56,802,565
Ensembl chr 4:56,749,680...56,802,331
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:26341559 NCBI chr 8:26,008,775...26,065,734
Ensembl chr 8:26,003,670...26,065,734
JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:11562355 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459
JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:11562355 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
JBrowse link
G Foxo1 forkhead box O1 IAGP MGI PMID:15184386 PMID:22055502 NCBI chr 3:52,175,758...52,257,530
Ensembl chr 3:52,175,757...52,260,642
JBrowse link
G Grb2 growth factor receptor bound protein 2 IAGP MGI PMID:11369229 NCBI chr11:115,534,871...115,599,423
Ensembl chr11:115,534,871...115,599,423
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IAGP MGI PMID:14659802 NCBI chr12:73,948,098...73,994,328
Ensembl chr12:73,948,149...73,994,304
JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:10529420 NCBI chr 6:52,132,347...52,135,297
Ensembl chr 6:52,132,570...52,135,297
JBrowse link
G Hoxb1 homeobox B1 IAGP MGI PMID:10529420 NCBI chr11:96,256,572...96,259,080
Ensembl chr11:96,256,578...96,259,082
JBrowse link
G Med12 mediator complex subunit 12 IAGP MGI PMID:20630950 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071
JBrowse link
G Med23 mediator complex subunit 23 IAGP MGI PMID:21305688 NCBI chr10:24,745,884...24,789,427
Ensembl chr10:24,745,884...24,789,579
JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 IAGP MGI PMID:16000382 PMID:16061358 NCBI chr18:10,725,523...10,822,969
Ensembl chr18:10,725,548...10,818,704
JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain IAGP MGI PMID:15750184 NCBI chr10:44,313,170...44,404,548
Ensembl chr10:44,313,173...44,404,497
JBrowse link
G Smad1 SMAD family member 1 IAGP MGI PMID:16765933 NCBI chr 8:80,065,024...80,126,057
Ensembl chr 8:80,065,024...80,126,147
JBrowse link
G Smad5 SMAD family member 5 IAGP MGI PMID:16765933 NCBI chr13:56,850,804...56,890,191
Ensembl chr13:56,850,823...56,890,190
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 PMID:15652707 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
absent second pharyngeal arch artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:9171826 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668
JBrowse link
absent sixth pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:16914493 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
absent sixth pharyngeal arch artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:21305688 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:16914493 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
absent third pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:11959834 PMID:12563036 PMID:21305688 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IAGP MGI PMID:14659802 NCBI chr12:73,948,098...73,994,328
Ensembl chr12:73,948,149...73,994,304
JBrowse link
G Kdr kinase insert domain protein receptor IAGP MGI PMID:21305688 NCBI chr 5:76,093,487...76,139,885
Ensembl chr 5:76,093,487...76,139,118
JBrowse link
G Med12 mediator complex subunit 12 IAGP MGI PMID:20630950 NCBI chr  X:100,317,697...100,342,540
Ensembl chr  X:100,317,636...100,341,071
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain IAGP MGI PMID:15750184 NCBI chr10:44,313,170...44,404,548
Ensembl chr10:44,313,173...44,404,497
JBrowse link
G Ptch1 patched 1 IAGP MGI PMID:21305688 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Smad1 SMAD family member 1 IAGP MGI PMID:16765933 NCBI chr 8:80,065,024...80,126,057
Ensembl chr 8:80,065,024...80,126,147
JBrowse link
G Smad5 SMAD family member 5 IAGP MGI PMID:16765933 NCBI chr13:56,850,804...56,890,191
Ensembl chr13:56,850,823...56,890,190
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:15652707 PMID:16914493 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
absent third pharyngeal arch artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:21305688 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
G Ripply3 ripply transcriptional repressor 3 IAGP MGI PMID:21177346 NCBI chr16:94,129,281...94,137,794
Ensembl chr16:94,129,279...94,137,794
JBrowse link
G Rxra retinoid X receptor alpha IAGP MGI PMID:19255444 NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969
JBrowse link
G Rxrb retinoid X receptor beta IAGP MGI PMID:19255444 NCBI chr17:34,250,786...34,257,377
Ensembl chr17:34,250,786...34,257,373
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:16914493 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
dilated pharyngeal arch artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvrl1 activin A receptor, type II-like 1 IAGP MGI PMID:10716993 NCBI chr15:101,026,403...101,043,217
Ensembl chr15:101,026,403...101,043,217
JBrowse link
dilated third pharyngeal arch artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrtfb myocardin related transcription factor B IAGP MGI PMID:22899851 NCBI chr16:13,073,913...13,235,393
Ensembl chr16:13,074,345...13,235,393
JBrowse link
ectopic pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) IAGP MGI PMID:8100767 NCBI chr 2:160,205,597...160,208,985
Ensembl chr 2:160,205,623...160,208,985
JBrowse link
enlarged first pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI-Kruppel family member GLI3 IAGP MGI PMID:6049666 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611
JBrowse link
G Hhip Hedgehog-interacting protein IAGP MGI PMID:15576403 NCBI chr 8:80,692,479...80,784,691
Ensembl chr 8:80,692,480...80,784,635
JBrowse link
G Ptch1 patched 1 IAGP MGI PMID:15576403 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412
JBrowse link
G Slc8a1 solute carrier family 8 (sodium/calcium exchanger), member 1 IAGP MGI PMID:21302256 NCBI chr17:81,680,534...82,045,816
Ensembl chr17:81,680,534...82,045,806
JBrowse link
enlarged pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift122 intraflagellar transport 122 IAGP MGI PMID:21209331 NCBI chr 6:115,830,340...115,903,660
Ensembl chr 6:115,830,431...115,903,660
JBrowse link
enlarged third pharyngeal arch artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:11562355 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459
JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:11562355 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:14623825 NCBI chr 6:52,146,039...52,190,047
Ensembl chr 6:52,146,042...52,190,316
JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
first pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gng5 G protein subunit gamma 5 IAGP MGI PMID:24599258 NCBI chr 3:146,205,591...146,211,298
Ensembl chr 3:146,205,562...146,211,327
JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived IAGP MGI PMID:1459449 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915
JBrowse link
G Stk11 serine/threonine kinase 11 IAGP MGI PMID:11509733 NCBI chr10:79,951,602...79,966,513
Ensembl chr10:79,951,637...79,966,516
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 IAGP MGI PMID:10888597 NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043
JBrowse link
fourth pharyngeal arch artery hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:34615475 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:15175244 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:12858556 PMID:15175244 PMID:16696966 PMID:19855134 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 PMID:19855134 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
fourth pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz1b bromodomain adjacent to zinc finger domain, 1B IAGP MGI PMID:19470456 NCBI chr 5:135,214,094...135,274,985
Ensembl chr 5:135,216,118...135,274,983
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16696966 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
fused first pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin IAGP MGI PMID:20508035 NCBI chr16:20,551,492...20,561,134
Ensembl chr16:20,551,877...20,561,134
JBrowse link
G Disp1 dispatched RND transporter family member 1 IAGP MGI PMID:12372301 NCBI chr 1:182,867,828...183,010,257
Ensembl chr 1:182,867,830...183,003,086
JBrowse link
G Gdf1 growth differentiation factor 1 IAGP MGI PMID:16564040 NCBI chr 8:70,768,425...70,784,242
Ensembl chr 8:70,768,425...70,784,242
Ensembl chr 8:70,768,425...70,784,242
JBrowse link
G Hhex hematopoietically expressed homeobox IAGP MGI PMID:10804184 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179
JBrowse link
G Nodal nodal IAGP MGI PMID:16564040 PMID:20508035 NCBI chr10:61,253,751...61,261,117
Ensembl chr10:61,253,751...61,261,117
JBrowse link
G Pcsk6 proprotein convertase subtilisin/kexin type 6 IAGP MGI PMID:10809672 NCBI chr 7:65,511,884...65,700,134
Ensembl chr 7:65,511,482...65,700,134
JBrowse link
G Pgap1 post-GPI attachment to proteins 1 IAGP MGI PMID:10529425 NCBI chr 1:54,512,159...54,596,843
Ensembl chr 1:54,512,153...54,596,843
JBrowse link
G Smo smoothened, frizzled class receptor IAGP MGI PMID:12372301 NCBI chr 6:29,735,496...29,761,365
Ensembl chr 6:29,735,502...29,761,364
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 IAGP MGI PMID:15013800 PMID:21549111 NCBI chr17:66,230,060...66,258,198
Ensembl chr17:66,228,967...66,258,221
JBrowse link
fused pharyngeal arches term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:12434331 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:21305688 PMID:22319578 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958
JBrowse link
persistent right 6th pharyngeal arch artery term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B9d2 B9 protein domain 2 IEA MGI NCBI chr 7:25,380,205...25,385,987
Ensembl chr 7:25,380,205...25,385,983
JBrowse link
G Ece1 endothelin converting enzyme 1 IAGP MGI PMID:9649553 NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540
JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9649553 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Prrc2b proline-rich coiled-coil 2B IEA MGI NCBI chr 2:32,041,002...32,124,549
Ensembl chr 2:32,041,094...32,124,549
JBrowse link
G Rpgrip1l Rpgrip1-like IEA MGI NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890
JBrowse link
G Sh3pxd2a SH3 and PX domains 2A IEA MGI NCBI chr19:47,248,613...47,453,053
Ensembl chr19:47,248,613...47,452,840
JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor IEA MGI NCBI chr 7:24,096,176...24,122,202
Ensembl chr 7:24,099,044...24,122,203
JBrowse link
G Tbx2 T-box 2 IAGP MGI PMID:15459098 NCBI chr11:85,723,441...85,732,774
Ensembl chr11:85,723,377...85,732,774
JBrowse link
G Traf6 TNF receptor-associated factor 6 IEA MGI NCBI chr 2:101,508,765...101,532,013
Ensembl chr 2:101,508,774...101,532,014
JBrowse link
pharyngeal arch artery hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxo1 forkhead box O1 IAGP MGI PMID:15184386 NCBI chr 3:52,175,758...52,257,530
Ensembl chr 3:52,175,757...52,260,642
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IAGP MGI PMID:9436976 NCBI chr12:73,948,098...73,994,328
Ensembl chr12:73,948,149...73,994,304
JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:10021345 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983
JBrowse link
pharyngeal arch artery stenosis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Krit1 KRIT1, ankyrin repeat containing IAGP MGI PMID:14993192 NCBI chr 5:3,853,156...3,894,515
Ensembl chr 5:3,853,184...3,895,564
JBrowse link
pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:12563036 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 PMID:16720880 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Foxo1 forkhead box O1 IAGP MGI PMID:15184386 NCBI chr 3:52,175,758...52,257,530
Ensembl chr 3:52,175,757...52,260,642
JBrowse link
G Gng5 G protein subunit gamma 5 IAGP MGI PMID:24599258 NCBI chr 3:146,205,591...146,211,298
Ensembl chr 3:146,205,562...146,211,327
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19415626 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Gtf2i general transcription factor II I IAGP MGI PMID:19109438 NCBI chr 5:134,266,686...134,346,571
Ensembl chr 5:134,266,688...134,343,614
JBrowse link
G Gtf2ird1 general transcription factor II I repeat domain-containing 1 IAGP MGI PMID:19109438 NCBI chr 5:134,386,515...134,485,628
Ensembl chr 5:134,386,510...134,485,570
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:9671575 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668
JBrowse link
G Mecom MDS1 and EVI1 complex locus IAGP MGI PMID:9256345 NCBI chr 3:30,005,445...30,563,937
Ensembl chr 3:30,005,445...30,602,157
JBrowse link
G Nkx2-5 NK2 homeobox 5 IAGP MGI PMID:16720880 NCBI chr17:27,057,638...27,063,962
Ensembl chr17:27,057,638...27,063,983
JBrowse link
G Setd2 SET domain containing 2 IAGP MGI PMID:20133625 NCBI chr 9:110,361,368...110,447,701
Ensembl chr 9:110,361,665...110,447,701
JBrowse link
G Tdg thymine DNA glycosylase IAGP MGI PMID:21722948 NCBI chr10:82,465,649...82,486,633
Ensembl chr10:82,465,662...82,486,633
JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:14623825 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:12539040 NCBI chr17:46,327,919...46,343,303
Ensembl chr17:46,327,919...46,343,295
JBrowse link
second pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,235...118,929,109
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:20035084 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:26341559 NCBI chr 8:26,008,775...26,065,734
Ensembl chr 8:26,003,670...26,065,734
JBrowse link
G Med23 mediator complex subunit 23 IAGP MGI PMID:21305688 NCBI chr10:24,745,884...24,789,427
Ensembl chr10:24,745,884...24,789,579
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16914493 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
small first pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 a disintegrin and metallopeptidase domain 10 IAGP MGI PMID:12354787 NCBI chr 9:70,586,133...70,687,511
Ensembl chr 9:70,586,279...70,687,511
JBrowse link
G Akap13 A kinase (PRKA) anchor protein 13 IAGP MGI PMID:20139090 NCBI chr 7:75,105,271...75,404,357
Ensembl chr 7:75,105,282...75,404,357
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:22319578 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525
JBrowse link
G Aph1a aph1 homolog A, gamma secretase subunit IAGP MGI PMID:15634781 NCBI chr 3:95,801,233...95,805,904
Ensembl chr 3:95,801,281...95,805,600
JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:17223098 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:10601039 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:9226455 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889
JBrowse link
G Foxc1 forkhead box C1 IAGP MGI PMID:11562355 NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459
JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:11562355 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
JBrowse link
G Foxo1 forkhead box O1 IAGP MGI PMID:15184386 PMID:22055502 NCBI chr 3:52,175,758...52,257,530
Ensembl chr 3:52,175,757...52,260,642
JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:9226455 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 IAGP MGI PMID:15680351 NCBI chr 3:8,728,419...8,732,098
Ensembl chr 3:8,728,419...8,732,316
JBrowse link
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 IAGP MGI PMID:15680351 NCBI chr10:30,708,355...30,718,779
Ensembl chr10:30,708,355...30,718,797
JBrowse link
G Hhip Hedgehog-interacting protein IAGP MGI PMID:15576403 NCBI chr 8:80,692,479...80,784,691
Ensembl chr 8:80,692,480...80,784,635
JBrowse link
G Itgb1 integrin beta 1 (fibronectin receptor beta) IAGP MGI PMID:9553049 NCBI chr 8:129,412,135...129,460,060
Ensembl chr 8:129,412,135...129,459,681
JBrowse link
G Kcnh2 potassium voltage-gated channel, subfamily H (eag-related), member 2 IAGP MGI PMID:18948620 NCBI chr 5:24,524,583...24,556,671
Ensembl chr 5:24,524,587...24,556,602
JBrowse link
G Mapk7 mitogen-activated protein kinase 7 IAGP MGI PMID:14675480 NCBI chr11:61,379,638...61,385,101
Ensembl chr11:61,379,638...61,385,232
JBrowse link
G Ptch1 patched 1 IAGP MGI PMID:15576403 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412
JBrowse link
G Rere arginine glutamic acid dipeptide (RE) repeats IAGP MGI PMID:14645126 NCBI chr 4:150,365,372...150,706,423
Ensembl chr 4:150,366,103...150,706,423
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 IAGP MGI PMID:21549111 NCBI chr17:66,230,060...66,258,198
Ensembl chr17:66,228,967...66,258,221
JBrowse link
small pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam10 a disintegrin and metallopeptidase domain 10 IAGP MGI PMID:22834956 NCBI chr 9:70,586,133...70,687,511
Ensembl chr 9:70,586,279...70,687,511
JBrowse link
G Arid3b AT rich interactive domain 3B (BRIGHT-like) IAGP MGI PMID:16530748 NCBI chr 9:57,697,636...57,744,130
Ensembl chr 9:57,697,636...57,744,076
JBrowse link
G Cdh5 cadherin 5 IAGP MGI PMID:10428027 NCBI chr 8:104,828,247...104,871,136
Ensembl chr 8:104,828,257...104,871,143
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 IAGP MGI PMID:22190459 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573
JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:11163240 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:16720879 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Foxd3 forkhead box D3 IAGP MGI PMID:18367558 NCBI chr 4:99,544,536...99,546,908
Ensembl chr 4:99,544,536...99,546,859
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:22190459 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:18367558 PMID:18952847 PMID:22190459 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hr lysine demethylase and nuclear receptor corepressor IAGP MGI PMID:22834956 NCBI chr14:70,789,626...70,810,988
Ensembl chr14:70,789,652...70,810,988
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IAGP MGI PMID:16720879 NCBI chr13:116,434,806...116,446,224
Ensembl chr13:116,434,817...116,446,225
JBrowse link
G Itgav integrin alpha V IAGP MGI PMID:9827803 NCBI chr 2:83,551,625...83,637,261
Ensembl chr 2:83,554,741...83,637,260
JBrowse link
G Kif3a kinesin family member 3A IAGP MGI PMID:10220415 NCBI chr11:53,456,531...53,495,075
Ensembl chr11:53,458,206...53,492,794
JBrowse link
G Lemd2 LEM domain containing 2 IAGP MGI PMID:25790465 NCBI chr17:27,408,574...27,426,228
Ensembl chr17:27,408,574...27,423,443
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 IAGP MGI PMID:18952847 NCBI chr16:16,801,246...16,865,317
Ensembl chr16:16,801,246...16,865,317
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 IAGP MGI PMID:18952847 NCBI chr 7:126,358,798...126,364,988
Ensembl chr 7:126,358,773...126,364,991
JBrowse link
G Notch1 notch 1 IAGP MGI PMID:21305688 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675
JBrowse link
G Otulin OTU deubiquitinase with linear linkage specificity IAGP MGI PMID:23708998 NCBI chr15:27,606,000...27,630,940
Ensembl chr15:27,542,721...27,630,779
JBrowse link
G Ovol2 ovo like zinc finger 2 IAGP MGI PMID:16423343 NCBI chr 2:144,147,095...144,174,000
Ensembl chr 2:144,147,095...144,174,066
JBrowse link
G Ripply3 ripply transcriptional repressor 3 IAGP MGI PMID:21177346 NCBI chr16:94,129,281...94,137,794
Ensembl chr16:94,129,279...94,137,794
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:21177346 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 IAGP MGI PMID:15282321 NCBI chr15:37,966,421...38,084,103
Ensembl chr15:37,967,572...38,079,098
JBrowse link
G Uhrf1 ubiquitin-like, containing PHD and RING finger domains, 1 IAGP MGI PMID:17994007 NCBI chr17:56,610,337...56,630,486
Ensembl chr17:56,610,321...56,630,486
JBrowse link
small second pharyngeal arch term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csnk2a1 casein kinase 2, alpha 1 polypeptide IAGP MGI PMID:17954558 NCBI chr 2:152,067,851...152,123,772
Ensembl chr 2:152,068,759...152,123,772
JBrowse link
G Edn1 endothelin 1 IAGP MGI PMID:8152482 NCBI chr13:42,454,952...42,461,466
Ensembl chr13:42,454,952...42,461,466
JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9449664 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:11163240 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:9694798 NCBI chr 8:26,008,775...26,065,734
Ensembl chr 8:26,003,670...26,065,734
JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:9226455 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889
JBrowse link
G Foxo1 forkhead box O1 IAGP MGI PMID:22055502 NCBI chr 3:52,175,758...52,257,530
Ensembl chr 3:52,175,757...52,260,642
JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:9226455 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 IAGP MGI PMID:15680351 NCBI chr 3:8,728,419...8,732,098
Ensembl chr 3:8,728,419...8,732,316
JBrowse link
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 IAGP MGI PMID:15680351 NCBI chr10:30,708,355...30,718,779
Ensembl chr10:30,708,355...30,718,797
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit IAGP MGI PMID:14659802 NCBI chr12:73,948,098...73,994,328
Ensembl chr12:73,948,149...73,994,304
JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:10529420 NCBI chr 6:52,132,347...52,135,297
Ensembl chr 6:52,132,570...52,135,297
JBrowse link
G Itgb1 integrin beta 1 (fibronectin receptor beta) IAGP MGI PMID:9553049 NCBI chr 8:129,412,135...129,460,060
Ensembl chr 8:129,412,135...129,459,681
JBrowse link
G Mapk7 mitogen-activated protein kinase 7 IAGP MGI PMID:14675480 NCBI chr11:61,379,638...61,385,101
Ensembl chr11:61,379,638...61,385,232
JBrowse link
G Psen1 presenilin 1 IAGP MGI PMID:10557208 NCBI chr12:83,734,926...83,781,869
Ensembl chr12:83,734,926...83,781,973
JBrowse link
G Psen2 presenilin 2 IAGP MGI PMID:10557208 NCBI chr 1:180,054,569...180,091,030
Ensembl chr 1:180,054,569...180,091,003
JBrowse link
G Ptch1 patched 1 IAGP MGI PMID:21305688 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242049 PMID:16914493 NCBI chr16:18,399,729...18,409,421
Ensembl chr16:18,399,729...18,409,421
JBrowse link
third pharyngeal arch artery hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:14623825 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:34615475 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:34615475 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
third pharyngeal arch hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:20035084 NCBI chr13:118,851,235...118,929,109
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Fgf8 fibroblast growth factor 8 IAGP MGI PMID:20035084 NCBI chr19:45,724,930...45,731,506
Ensembl chr19:45,725,237...45,731,354
JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:20035084 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536
JBrowse link
G Rxra retinoid X receptor alpha IAGP MGI PMID:19255444 NCBI chr 2:27,566,457...27,653,331
Ensembl chr 2:27,566,452...27,652,969
JBrowse link
G Rxrb retinoid X receptor beta IAGP MGI PMID:19255444 NCBI chr17:34,250,786...34,257,377
Ensembl chr17:34,250,786...34,257,373
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16219
    craniofacial phenotype 1565
      abnormal craniofacial morphology 1565
        abnormal craniofacial development 503
          abnormal pharyngeal arch morphology 205
            abnormal first pharyngeal arch morphology + 68
            abnormal fourth pharyngeal arch morphology + 35
            abnormal pharyngeal arch artery morphology + 66
            abnormal pharyngeal arch mesenchyme morphology 10
            abnormal second pharyngeal arch morphology + 48
            abnormal sixth pharyngeal arch morphology + 30
            abnormal third pharyngeal arch morphology + 32
            absent pharyngeal arches + 34
            ectopic pharyngeal arch 1
            enlarged pharyngeal arch + 5
            fused pharyngeal arches 2
            small pharyngeal arch + 67
paths to the root