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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:abnormal gut-associated lymphoid tissue morphology
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Accession:MP:0002378 term browser browse the term
Definition:any structural anomaly of the regional immune system located in the gut
Synonyms:exact_synonym: GALT dysplasia;   gut-associated lymphoid tissue dysplasia
 broad_synonym: GALT abnormalities;   gut-associated lymphoid tissue abnormalities



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abnormal gut-associated lymphoid tissue morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp3 aquaporin 3 IEA MGI NCBI chr 4:41,092,724...41,098,183
Ensembl chr 4:41,092,722...41,098,183
JBrowse link
G Birc3 baculoviral IAP repeat-containing 3 IAGP MGI PMID:21048983 NCBI chr 9:7,848,698...7,873,199
Ensembl chr 9:7,848,700...7,873,187
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 IAGP MGI PMID:10843382 PMID:16713979 PMID:17392163 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973
JBrowse link
G Commd10 COMM domain containing 10 IAGP MGI PMID:31434684 NCBI chr18:47,091,917...47,242,435
Ensembl chr18:47,091,883...47,367,351
JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:20072126 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Id2 inhibitor of DNA binding 2 IAGP MGI PMID:14691482 NCBI chr12:25,143,798...25,146,091
Ensembl chr12:25,143,798...25,147,139
JBrowse link
G Igh immunoglobulin heavy chain complex IAGP MGI PMID:14758357 NCBI chr12:113,222,388...115,973,574 JBrowse link
G Il2rg interleukin 2 receptor, gamma chain IAGP MGI PMID:7697543 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861
JBrowse link
G Itgb7 integrin beta 7 IAGP MGI PMID:8684468 NCBI chr15:102,124,429...102,141,840
Ensembl chr15:102,124,430...102,140,379
JBrowse link
G Lmo4 LIM domain only 4 IAGP MGI PMID:31434684 NCBI chr 3:143,894,291...143,911,016
Ensembl chr 3:143,894,291...143,910,981
JBrowse link
G Lta lymphotoxin A IAGP MGI PMID:15247480 NCBI chr17:35,422,141...35,424,568
Ensembl chr17:35,422,141...35,424,327
JBrowse link
G Mir155 microRNA 155 IAGP MGI PMID:17463289 NCBI chr16:84,511,028...84,511,092
Ensembl chr16:84,511,028...84,511,092
JBrowse link
G Nkx2-3 NK2 homeobox 3 IAGP MGI PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331
JBrowse link
G Rorc RAR-related orphan receptor gamma IAGP MGI PMID:14691482 PMID:15247480 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583
JBrowse link
G Stat3 signal transducer and activator of transcription 3 IAGP MGI PMID:17581537 NCBI chr11:100,777,632...100,830,447
Ensembl chr11:100,775,924...100,830,366
JBrowse link
G Yeats4 YEATS domain containing 4 IAGP MGI PMID:31434684 NCBI chr10:117,051,046...117,060,412
Ensembl chr10:117,051,126...117,060,412
JBrowse link
abnormal Peyer's patch epithelium morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IAGP MGI PMID:25751305 PMID:26601902 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709
JBrowse link
abnormal Peyer's patch follicle morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agr2 anterior gradient 2 IAGP MGI PMID:20025862 NCBI chr12:36,042,924...36,054,080
Ensembl chr12:36,042,906...36,054,086
JBrowse link
G Bcl3 B cell leukemia/lymphoma 3 IAGP MGI PMID:12055593 NCBI chr 7:19,542,387...19,556,691
Ensembl chr 7:19,542,387...19,556,695
JBrowse link
G Car6 carbonic anhydrase 6 IAGP MGI PMID:20835760 NCBI chr 4:150,271,472...150,285,592
Ensembl chr 4:150,271,472...150,285,789
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 IAGP MGI PMID:11254677 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973
JBrowse link
G Cd19 CD19 antigen IAGP MGI PMID:15520246 NCBI chr 7:126,007,620...126,016,401
Ensembl chr 7:126,007,622...126,014,061
JBrowse link
G Cxcr4 C-X-C motif chemokine receptor 4 IAGP MGI PMID:15520246 NCBI chr 1:128,515,936...128,520,036
Ensembl chr 1:128,515,936...128,520,030
JBrowse link
G Fgl2 fibrinogen-like protein 2 IAGP MGI PMID:18097026 NCBI chr 5:21,577,671...21,583,384
Ensembl chr 5:21,577,640...21,583,372
JBrowse link
G Itgb7 integrin beta 7 IAGP MGI PMID:8684468 NCBI chr15:102,124,429...102,141,840
Ensembl chr15:102,124,430...102,140,379
JBrowse link
G Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 IAGP MGI PMID:12055593 NCBI chr 3:135,290,416...135,397,422
Ensembl chr 3:135,290,416...135,397,308
JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 IAGP MGI PMID:12055593 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824
JBrowse link
G Nkx2-3 NK2 homeobox 3 IAGP MGI PMID:10790368 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331
JBrowse link
G Prkcz protein kinase C, zeta IAGP MGI PMID:11684013 NCBI chr 4:155,344,579...155,445,856
Ensembl chr 4:155,344,586...155,445,818
JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:9177215 PMID:9368616 PMID:11672536 PMID:15832287 PMID:16751399 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IAGP MGI PMID:26601902 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709
JBrowse link
G Tnfrsf13b tumor necrosis factor receptor superfamily, member 13b IAGP MGI PMID:11429549 NCBI chr11:61,017,567...61,040,435
Ensembl chr11:61,017,581...61,040,198
JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a IAGP MGI PMID:9177215 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447
JBrowse link
abnormal Peyer's patch germinal center morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase IAGP MGI PMID:33098766 NCBI chr 6:122,530,768...122,541,139
Ensembl chr 6:122,530,760...122,541,139
JBrowse link
G Bcl3 B cell leukemia/lymphoma 3 IAGP MGI PMID:12055593 NCBI chr 7:19,542,387...19,556,691
Ensembl chr 7:19,542,387...19,556,695
JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 IAGP MGI PMID:9171827 PMID:23455674 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602
JBrowse link
G Cacnb4 calcium channel, voltage-dependent, beta 4 subunit IAGP MGI PMID:5037658 NCBI chr 2:52,318,332...52,566,816
Ensembl chr 2:52,318,337...52,566,843
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 IAGP MGI PMID:10843382 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973
JBrowse link
G Cd19 CD19 antigen IAGP MGI PMID:24242374 NCBI chr 7:126,007,620...126,016,401
Ensembl chr 7:126,007,622...126,014,061
JBrowse link
G Cyld CYLD lysine 63 deubiquitinase IAGP MGI PMID:17923499 NCBI chr 8:89,423,506...89,478,574
Ensembl chr 8:89,423,675...89,478,573
JBrowse link
G Foxn1 forkhead box N1 IAGP MGI PMID:5784127 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:24242374 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Icos inducible T cell co-stimulator IAGP MGI PMID:12853164 PMID:19915142 NCBI chr 1:60,999,909...61,039,481
Ensembl chr 1:61,017,086...61,039,479
JBrowse link
G Igh immunoglobulin heavy chain complex IAGP MGI PMID:14758357 NCBI chr12:113,222,388...115,973,574 JBrowse link
G Igkc immunoglobulin kappa constant IAGP MGI PMID:7664778 NCBI chr 6:70,703,419...70,703,738
Ensembl chr 6:70,703,419...70,703,950
JBrowse link
G Mir155 microRNA 155 IAGP MGI PMID:17463289 NCBI chr16:84,511,028...84,511,092
Ensembl chr16:84,511,028...84,511,092
JBrowse link
G Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 IAGP MGI PMID:12055593 NCBI chr 3:135,290,416...135,397,422
Ensembl chr 3:135,290,416...135,397,308
JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 IAGP MGI PMID:12055593 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824
JBrowse link
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta IAGP MGI PMID:12130661 NCBI chr 4:149,733,625...149,787,023
Ensembl chr 4:149,733,625...149,787,028
JBrowse link
G Pou2af1 POU domain, class 2, associating factor 1 IAGP MGI PMID:8849728 NCBI chr 9:51,124,990...51,151,379
Ensembl chr 9:51,125,008...51,151,380
JBrowse link
G Prkcd protein kinase C, delta IAGP MGI PMID:11976687 NCBI chr14:30,317,310...30,348,637
Ensembl chr14:30,317,311...30,348,167
JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) IAGP MGI PMID:14752163 NCBI chr 3:103,763,891...103,819,568
Ensembl chr 3:103,767,111...103,819,563
JBrowse link
G Stk4 serine/threonine kinase 4 IAGP MGI PMID:19339990 NCBI chr 2:163,916,033...163,997,444
Ensembl chr 2:163,912,242...163,997,444
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IAGP MGI PMID:1436033 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:9426403 PMID:15832287 PMID:16751399 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IAGP MGI PMID:26601902 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709
JBrowse link
abnormal Peyer's patch morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl3 B cell leukemia/lymphoma 3 IAGP MGI PMID:12055593 NCBI chr 7:19,542,387...19,556,691
Ensembl chr 7:19,542,387...19,556,695
JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 IAGP MGI PMID:21636294 NCBI chr16:23,780,058...23,807,602
Ensembl chr16:23,783,802...23,807,602
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 IAGP MGI PMID:10843382 PMID:11254677 PMID:17392163 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973
JBrowse link
G Cd19 CD19 antigen IAGP MGI PMID:18663224 NCBI chr 7:126,007,620...126,016,401
Ensembl chr 7:126,007,622...126,014,061
JBrowse link
G Cd207 CD207 antigen IAGP MGI PMID:23118208 NCBI chr 6:83,648,189...83,654,839
Ensembl chr 6:83,648,197...83,654,839
JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:11585809 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573
JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 IAGP MGI PMID:10917533 NCBI chr 5:96,104,785...96,108,927
Ensembl chr 5:96,104,810...96,108,927
JBrowse link
G Cxcr5 C-X-C motif chemokine receptor 5 IAGP MGI PMID:8978608 NCBI chr 9:44,423,084...44,437,741
Ensembl chr 9:44,423,084...44,473,174
JBrowse link
G Dock2 dedicator of cyto-kinesis 2 IAGP MGI PMID:11518968 NCBI chr11:34,176,815...34,674,732
Ensembl chr11:34,176,815...34,674,719
JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:26061883 NCBI chr14:104,052,055...104,081,764
Ensembl chr14:104,052,061...104,081,838
JBrowse link
G Foxn1 forkhead box N1 IAGP MGI PMID:721133 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384
JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:20072126 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18663224 PMID:20363774 PMID:26061883 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:26061883 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Igkc immunoglobulin kappa constant IAGP MGI PMID:7664778 NCBI chr 6:70,703,419...70,703,738
Ensembl chr 6:70,703,419...70,703,950
JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 IAGP MGI PMID:12150927 NCBI chr10:119,977,553...120,038,035
Ensembl chr10:119,977,553...120,038,035
JBrowse link
G Lcp2 lymphocyte cytosolic protein 2 IAGP MGI PMID:20363774 NCBI chr11:33,996,928...34,042,281
Ensembl chr11:33,996,920...34,042,295
JBrowse link
G Lgals9 lectin, galactose binding, soluble 9 IAGP MGI PMID:23118208 NCBI chr11:78,853,805...78,875,750
Ensembl chr11:78,853,800...78,875,772
JBrowse link
G Lyst lysosomal trafficking regulator IAGP MGI PMID:8806787 NCBI chr13:13,764,896...13,953,388
Ensembl chr13:13,764,982...13,953,388
JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 IAGP MGI PMID:12055593 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 IAGP MGI PMID:17565376 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102
JBrowse link
G Polm polymerase (DNA directed), mu IAGP MGI PMID:12932354 NCBI chr11:5,777,860...5,788,831
Ensembl chr11:5,777,860...5,788,016
JBrowse link
G Prkcz protein kinase C, zeta IAGP MGI PMID:11684013 NCBI chr 4:155,344,579...155,445,856
Ensembl chr 4:155,344,586...155,445,818
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:8806787 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 IAGP MGI PMID:1184950 NCBI chr 6:124,697,670...124,715,672
Ensembl chr 6:124,697,670...124,715,677
JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:12618483 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874
JBrowse link
G Relb avian reticuloendotheliosis viral (v-rel) oncogene related B IAGP MGI PMID:1443055 NCBI chr 7:19,340,142...19,363,352
Ensembl chr 7:19,340,142...19,363,363
JBrowse link
G Runx1 runt related transcription factor 1 IAGP MGI PMID:21178013 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037
JBrowse link
G Socs1 suppressor of cytokine signaling 1 IAGP MGI PMID:9826711 NCBI chr16:10,601,672...10,603,400
Ensembl chr16:10,600,104...10,603,400
JBrowse link
G Spib Spi-B transcription factor (Spi-1/PU.1 related) IAGP MGI PMID:22706340 NCBI chr 7:44,175,419...44,181,511
Ensembl chr 7:44,175,417...44,181,495
JBrowse link
G Tcirg1 T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3 IAGP MGI PMID:15294947 NCBI chr19:3,946,050...3,957,717
Ensembl chr19:3,946,050...3,957,133
JBrowse link
G Tlr7 toll-like receptor 7 IAGP MGI PMID:35477763 NCBI chr  X:166,086,376...166,113,570
Ensembl chr  X:166,087,925...166,113,554
JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:9177215 PMID:9368616 PMID:11672536 PMID:16751399 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IAGP MGI PMID:26601902 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709
JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a IAGP MGI PMID:9177215 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447
JBrowse link
G Tnip1 TNFAIP3 interacting protein 1 IAGP MGI PMID:21606507 NCBI chr11:54,801,613...54,853,766
Ensembl chr11:54,801,611...54,853,743
JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:21411755 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699
JBrowse link
abnormal Peyer's patch T cell area morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl3 B cell leukemia/lymphoma 3 IAGP MGI PMID:12055593 NCBI chr 7:19,542,387...19,556,691
Ensembl chr 7:19,542,387...19,556,695
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 IAGP MGI PMID:16713979 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973
JBrowse link
G Ccr7 C-C motif chemokine receptor 7 IAGP MGI PMID:10520991 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903
JBrowse link
G Lyve1 lymphatic vessel endothelial hyaluronan receptor 1 IAGP MGI PMID:20026661 NCBI chr 7:110,449,814...110,462,160
Ensembl chr 7:110,449,814...110,462,446
JBrowse link
G Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 IAGP MGI PMID:12055593 NCBI chr 3:135,290,416...135,397,422
Ensembl chr 3:135,290,416...135,397,308
JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 IAGP MGI PMID:12055593 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824
JBrowse link
G Sphk1 sphingosine kinase 1 IAGP MGI PMID:20026661 NCBI chr11:116,421,662...116,427,502
Ensembl chr11:116,421,751...116,427,501
JBrowse link
G Sphk2 sphingosine kinase 2 IAGP MGI PMID:20026661 NCBI chr 7:45,358,887...45,367,426
Ensembl chr 7:45,358,891...45,367,426
JBrowse link
G Stk4 serine/threonine kinase 4 IAGP MGI PMID:19339990 NCBI chr 2:163,916,033...163,997,444
Ensembl chr 2:163,912,242...163,997,444
JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:15832287 PMID:16751399 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IAGP MGI PMID:26601902 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709
JBrowse link
G Wipf1 WAS/WASL interacting protein family, member 1 IAGP MGI PMID:17086554 NCBI chr 2:73,259,954...73,359,831
Ensembl chr 2:73,259,954...73,360,078
JBrowse link
absent Peyer's patches term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core binding factor beta IAGP MGI PMID:21178013 NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621
JBrowse link
G Cd79b CD79B antigen IAGP MGI PMID:19727123 NCBI chr11:106,202,167...106,205,388
Ensembl chr11:106,202,167...106,205,588
JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:11585809 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573
JBrowse link
G Cxcr5 C-X-C motif chemokine receptor 5 IAGP MGI PMID:8978608 NCBI chr 9:44,423,084...44,437,741
Ensembl chr 9:44,423,084...44,473,174
JBrowse link
G Foxn1 forkhead box N1 IAGP MGI PMID:15699117 NCBI chr11:78,248,403...78,277,597
Ensembl chr11:78,248,403...78,277,384
JBrowse link
G Id2 inhibitor of DNA binding 2 IAGP MGI PMID:10067894 PMID:17452521 NCBI chr12:25,143,798...25,146,091
Ensembl chr12:25,143,798...25,147,139
JBrowse link
G Igh immunoglobulin heavy chain complex IAGP MGI PMID:15879114 NCBI chr12:113,222,388...115,973,574 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 IAGP MGI PMID:7923373 PMID:8986714 PMID:24013668 NCBI chr11:11,634,970...11,722,930
Ensembl chr11:11,634,980...11,722,926
JBrowse link
G Il2rg interleukin 2 receptor, gamma chain IAGP MGI PMID:7831294 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861
JBrowse link
G Il7 interleukin 7 IAGP MGI PMID:7699333 PMID:17179092 NCBI chr 3:7,637,088...7,678,820
Ensembl chr 3:7,635,054...7,678,820
JBrowse link
G Il7r interleukin 7 receptor IAGP MGI PMID:9488150 NCBI chr15:9,505,880...9,530,270
Ensembl chr15:9,505,874...9,530,262
JBrowse link
G Lta lymphotoxin A IAGP MGI PMID:7636227 PMID:8171322 PMID:8671586 PMID:9368616 PMID:9565643 More... NCBI chr17:35,422,141...35,424,568
Ensembl chr17:35,422,141...35,424,327
JBrowse link
G Ltb lymphotoxin B IAGP MGI PMID:9133428 PMID:9256477 PMID:10586051 PMID:12070288 PMID:12115620 More... NCBI chr17:35,413,483...35,415,281
Ensembl chr17:35,413,415...35,415,296
JBrowse link
G Ltbr lymphotoxin B receptor IAGP MGI PMID:9697836 NCBI chr 6:125,283,534...125,291,026
Ensembl chr 6:125,283,534...125,290,848
JBrowse link
G Map3k14 mitogen-activated protein kinase kinase kinase 14 IAGP MGI PMID:8299692 PMID:10319865 PMID:11251123 PMID:12810685 PMID:15699117 More... NCBI chr11:103,110,590...103,158,227
Ensembl chr11:103,110,588...103,158,298
JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 IAGP MGI PMID:18025196 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:6823332 PMID:9990036 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Rag2 recombination activating gene 2 IAGP MGI PMID:17476358 NCBI chr 2:101,455,057...101,462,873
Ensembl chr 2:101,455,063...101,462,874
JBrowse link
G Relb avian reticuloendotheliosis viral (v-rel) oncogene related B IAGP MGI PMID:12810685 NCBI chr 7:19,340,142...19,363,352
Ensembl chr 7:19,340,142...19,363,363
JBrowse link
G Rorc RAR-related orphan receptor gamma IAGP MGI PMID:10963675 PMID:14691482 PMID:28846085 NCBI chr 3:94,280,106...94,305,583
Ensembl chr 3:94,280,101...94,305,583
JBrowse link
G Sharpin SHANK-associated RH domain interacting protein IAGP MGI PMID:10201907 PMID:17538631 NCBI chr15:76,231,240...76,235,310
Ensembl chr15:76,231,240...76,235,311
JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:8671586 PMID:9368616 PMID:10586051 PMID:12446781 PMID:15832287 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfsf14 tumor necrosis factor (ligand) superfamily, member 14 IAGP MGI PMID:12070288 NCBI chr17:57,496,437...57,501,182
Ensembl chr17:57,496,492...57,501,177
JBrowse link
decreased Peyer's patch number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl3 B cell leukemia/lymphoma 3 IAGP MGI PMID:12055593 NCBI chr 7:19,542,387...19,556,691
Ensembl chr 7:19,542,387...19,556,695
JBrowse link
G Cacnb4 calcium channel, voltage-dependent, beta 4 subunit IAGP MGI PMID:5037658 NCBI chr 2:52,318,332...52,566,816
Ensembl chr 2:52,318,337...52,566,843
JBrowse link
G Cbfb core binding factor beta IAGP MGI PMID:21178013 NCBI chr 8:105,897,306...105,944,621
Ensembl chr 8:105,897,306...105,944,621
JBrowse link
G Ccr6 C-C motif chemokine receptor 6 IAGP MGI PMID:17392163 NCBI chr17:8,454,875...8,477,353
Ensembl chr17:8,454,875...8,475,973
JBrowse link
G Cd74 CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated) IAGP MGI PMID:23267015 NCBI chr18:60,936,921...60,945,724
Ensembl chr18:60,936,920...60,945,724
JBrowse link
G Commd10 COMM domain containing 10 IAGP MGI PMID:31434684 NCBI chr18:47,091,917...47,242,435
Ensembl chr18:47,091,883...47,367,351
JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:11585809 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573
JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 IAGP MGI PMID:10917533 NCBI chr 5:96,104,785...96,108,927
Ensembl chr 5:96,104,810...96,108,927
JBrowse link
G Fgl2 fibrinogen-like protein 2 IAGP MGI PMID:18097026 NCBI chr 5:21,577,671...21,583,384
Ensembl chr 5:21,577,640...21,583,372
JBrowse link
G Gcsam germinal center associated, signaling and motility IAGP MGI PMID:16493007 NCBI chr16:45,430,803...45,443,230
Ensembl chr16:45,430,743...45,443,230
JBrowse link
G Gfra1 glial cell line derived neurotrophic factor family receptor alpha 1 IAGP MGI PMID:17322904 NCBI chr19:58,224,013...58,444,387
Ensembl chr19:58,224,036...58,444,341
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:26116508 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Ighm immunoglobulin heavy constant mu IAGP MGI PMID:20133609 NCBI chr12:113,382,446...113,386,350
Ensembl chr12:113,382,178...113,386,350
JBrowse link
G Itga4 integrin alpha 4 IAGP MGI PMID:16470243 NCBI chr 2:79,084,767...79,163,458
Ensembl chr 2:79,085,770...79,163,467
JBrowse link
G Lmo4 LIM domain only 4 IAGP MGI PMID:31434684 NCBI chr 3:143,894,291...143,911,016
Ensembl chr 3:143,894,291...143,910,981
JBrowse link
G Map3k14 mitogen-activated protein kinase kinase kinase 14 IAGP MGI PMID:12810685 PMID:26116508 NCBI chr11:103,110,590...103,158,227
Ensembl chr11:103,110,588...103,158,298
JBrowse link
G Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 IAGP MGI PMID:12055593 NCBI chr 3:135,290,416...135,397,422
Ensembl chr 3:135,290,416...135,397,308
JBrowse link
G Nfkbia nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha IAGP MGI PMID:21333553 NCBI chr12:55,536,194...55,539,432
Ensembl chr12:55,536,195...55,539,432
JBrowse link
G Nkx2-3 NK2 homeobox 3 IAGP MGI PMID:10790368 PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331
JBrowse link
G Relb avian reticuloendotheliosis viral (v-rel) oncogene related B IAGP MGI PMID:12810685 NCBI chr 7:19,340,142...19,363,352
Ensembl chr 7:19,340,142...19,363,363
JBrowse link
G Rigi RNA sensor RIG-I IAGP MGI PMID:17893708 NCBI chr 4:40,203,775...40,239,843
Ensembl chr 4:40,203,773...40,239,828
JBrowse link
G Runx1 runt related transcription factor 1 IAGP MGI PMID:21178013 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037
JBrowse link
G Sash3 SAM and SH3 domain containing 3 IAGP MGI PMID:16227612 NCBI chr  X:47,235,313...47,250,442
Ensembl chr  X:47,235,313...47,250,442
JBrowse link
G Sppl2a signal peptide peptidase like 2A IAGP MGI PMID:23267015 NCBI chr 2:126,732,311...126,775,706
Ensembl chr 2:126,732,311...126,775,155
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IAGP MGI PMID:1436033 NCBI chr 7:25,386,406...25,404,503
Ensembl chr 7:25,386,427...25,404,502
JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:9177215 PMID:9368616 PMID:15832287 PMID:16751399 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IAGP MGI PMID:10500098 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709
JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a IAGP MGI PMID:9177215 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447
JBrowse link
G Tnfsf11 tumor necrosis factor (ligand) superfamily, member 11 IAGP MGI PMID:22836362 NCBI chr14:78,514,886...78,545,483
Ensembl chr14:78,514,885...78,545,483
JBrowse link
G Tox thymocyte selection-associated high mobility group box IAGP MGI PMID:20818394 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557
JBrowse link
G Yeats4 YEATS domain containing 4 IAGP MGI PMID:31434684 NCBI chr10:117,051,046...117,060,412
Ensembl chr10:117,051,126...117,060,412
JBrowse link
enlarged Peyer's patches term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd19 CD19 antigen IAGP MGI PMID:11070163 NCBI chr 7:126,007,620...126,016,401
Ensembl chr 7:126,007,622...126,014,061
JBrowse link
G Cyld CYLD lysine 63 deubiquitinase IAGP MGI PMID:17923499 NCBI chr 8:89,423,506...89,478,574
Ensembl chr 8:89,423,675...89,478,573
JBrowse link
G Fas Fas cell surface death receptor IEA MGI NCBI chr19:34,267,926...34,305,175
Ensembl chr19:34,268,066...34,305,172
JBrowse link
G Il2rg interleukin 2 receptor, gamma chain IAGP MGI PMID:8562967 NCBI chr  X:100,307,991...100,311,861
Ensembl chr  X:100,307,984...100,311,861
JBrowse link
G Irak3 interleukin-1 receptor-associated kinase 3 IAGP MGI PMID:12150927 NCBI chr10:119,977,553...120,038,035
Ensembl chr10:119,977,553...120,038,035
JBrowse link
G Itgav integrin alpha V IAGP MGI PMID:17895374 NCBI chr 2:83,554,796...83,637,261
Ensembl chr 2:83,554,741...83,637,260
JBrowse link
G Mdm2 transformed mouse 3T3 cell double minute 2 IAGP MGI PMID:20832751 NCBI chr10:117,524,780...117,546,663
Ensembl chr10:117,524,780...117,546,663
JBrowse link
G Nlrp6 NLR family, pyrin domain containing 6 IAGP MGI PMID:21565393 NCBI chr 7:140,500,777...140,509,105
Ensembl chr 7:140,500,815...140,509,105
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 IAGP MGI PMID:17565376 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:10910075 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Pycard PYD and CARD domain containing IAGP MGI PMID:21565393 NCBI chr 7:127,590,545...127,593,039
Ensembl chr 7:127,588,880...127,593,039
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:11070163 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428
JBrowse link
increased Peyer's patch number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nod2 nucleotide-binding oligomerization domain containing 2 IAGP MGI PMID:17565376 NCBI chr 8:89,373,943...89,415,103
Ensembl chr 8:89,373,943...89,415,102
JBrowse link
small Peyer's patches term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl3 B cell leukemia/lymphoma 3 IAGP MGI PMID:12055593 NCBI chr 7:19,542,387...19,556,691
Ensembl chr 7:19,542,387...19,556,695
JBrowse link
G Cacnb4 calcium channel, voltage-dependent, beta 4 subunit IAGP MGI PMID:5037658 NCBI chr 2:52,318,332...52,566,816
Ensembl chr 2:52,318,337...52,566,843
JBrowse link
G Ccr7 C-C motif chemokine receptor 7 IAGP MGI PMID:10520991 NCBI chr11:99,035,025...99,045,903
Ensembl chr11:99,035,022...99,045,903
JBrowse link
G Cd19 CD19 antigen IAGP MGI PMID:12354378 NCBI chr 7:126,007,620...126,016,401
Ensembl chr 7:126,007,622...126,014,061
JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:11585809 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573
JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 IAGP MGI PMID:10917533 NCBI chr 5:96,104,785...96,108,927
Ensembl chr 5:96,104,810...96,108,927
JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:26061883 NCBI chr14:104,052,055...104,081,764
Ensembl chr14:104,052,061...104,081,838
JBrowse link
G Gcsam germinal center associated, signaling and motility IAGP MGI PMID:16493007 NCBI chr16:45,430,803...45,443,230
Ensembl chr16:45,430,743...45,443,230
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:26061883 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:26061883 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Icos inducible T cell co-stimulator IAGP MGI PMID:12853164 PMID:19915142 NCBI chr 1:60,999,909...61,039,481
Ensembl chr 1:61,017,086...61,039,479
JBrowse link
G Ifng interferon gamma IAGP MGI PMID:9647244 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797
JBrowse link
G Ighm immunoglobulin heavy constant mu IAGP MGI PMID:20133609 NCBI chr12:113,382,446...113,386,350
Ensembl chr12:113,382,178...113,386,350
JBrowse link
G Itga4 integrin alpha 4 IAGP MGI PMID:18809756 NCBI chr 2:79,084,767...79,163,458
Ensembl chr 2:79,085,770...79,163,467
JBrowse link
G Itgb7 integrin beta 7 IAGP MGI PMID:8684468 PMID:17786243 NCBI chr15:102,124,429...102,141,840
Ensembl chr15:102,124,430...102,140,379
JBrowse link
G Jak3 Janus kinase 3 IAGP MGI PMID:7481767 NCBI chr 8:72,129,027...72,143,221
Ensembl chr 8:72,128,940...72,143,219
JBrowse link
G Ltb lymphotoxin B IAGP MGI PMID:12354378 NCBI chr17:35,413,483...35,415,281
Ensembl chr17:35,413,415...35,415,296
JBrowse link
G Lyn LYN proto-oncogene, Src family tyrosine kinase IAGP MGI PMID:7584145 NCBI chr 4:3,676,865...3,791,613
Ensembl chr 4:3,678,115...3,813,122
JBrowse link
G Lyst lysosomal trafficking regulator IAGP MGI PMID:8806787 NCBI chr13:13,764,896...13,953,388
Ensembl chr13:13,764,982...13,953,388
JBrowse link
G Madcam1 mucosal vascular addressin cell adhesion molecule 1 IAGP MGI PMID:19450594 NCBI chr10:79,500,393...79,504,376
Ensembl chr10:79,500,393...79,504,371
JBrowse link
G Map3k14 mitogen-activated protein kinase kinase kinase 14 IAGP MGI PMID:12810685 NCBI chr11:103,110,590...103,158,227
Ensembl chr11:103,110,588...103,158,298
JBrowse link
G Nfkb1 nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105 IAGP MGI PMID:12055593 NCBI chr 3:135,290,416...135,397,422
Ensembl chr 3:135,290,416...135,397,308
JBrowse link
G Nfkb2 nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100 IAGP MGI PMID:12055593 NCBI chr19:46,285,478...46,300,839
Ensembl chr19:46,292,759...46,300,824
JBrowse link
G Nfkbia nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha IAGP MGI PMID:21333553 NCBI chr12:55,536,194...55,539,432
Ensembl chr12:55,536,195...55,539,432
JBrowse link
G Nkx2-3 NK2 homeobox 3 IAGP MGI PMID:10790368 PMID:10926756 NCBI chr19:43,600,764...43,604,331
Ensembl chr19:43,600,764...43,604,331
JBrowse link
G Prkcz protein kinase C, zeta IAGP MGI PMID:11684013 NCBI chr 4:155,344,579...155,445,856
Ensembl chr 4:155,344,586...155,445,818
JBrowse link
G Prkdc protein kinase, DNA activated, catalytic polypeptide IAGP MGI PMID:8806787 PMID:9990036 NCBI chr16:15,455,698...15,660,103
Ensembl chr16:15,455,730...15,660,099
JBrowse link
G Relb avian reticuloendotheliosis viral (v-rel) oncogene related B IAGP MGI PMID:12810685 NCBI chr 7:19,340,142...19,363,352
Ensembl chr 7:19,340,142...19,363,363
JBrowse link
G Rgs1 regulator of G-protein signaling 1 IAGP MGI PMID:15199133 NCBI chr 1:144,120,407...144,124,862
Ensembl chr 1:144,118,034...144,124,980
JBrowse link
G Rigi RNA sensor RIG-I IAGP MGI PMID:17893708 NCBI chr 4:40,203,775...40,239,843
Ensembl chr 4:40,203,773...40,239,828
JBrowse link
G Runx1 runt related transcription factor 1 IAGP MGI PMID:16247465 PMID:21178013 NCBI chr16:92,398,354...92,622,962
Ensembl chr16:92,398,354...92,623,037
JBrowse link
G Sppl2a signal peptide peptidase like 2A IAGP MGI PMID:23267015 NCBI chr 2:126,732,311...126,775,706
Ensembl chr 2:126,732,311...126,775,155
JBrowse link
G Tcra T cell receptor alpha chain IAGP MGI PMID:1604321 NCBI chr14:52,665,424...54,461,655 JBrowse link
G Tnf tumor necrosis factor IAGP MGI PMID:9368616 PMID:15832287 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983
JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IAGP MGI PMID:10500098 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709
JBrowse link
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a IAGP MGI PMID:9647244 NCBI chr 6:125,326,686...125,339,446
Ensembl chr 6:125,326,325...125,339,447
JBrowse link
G Tnfrsf1b tumor necrosis factor receptor superfamily, member 1b IAGP MGI PMID:9647244 NCBI chr 4:144,938,938...144,973,453
Ensembl chr 4:144,940,033...144,973,440
JBrowse link
G Tnfsf11 tumor necrosis factor (ligand) superfamily, member 11 IAGP MGI PMID:9950424 PMID:22836362 NCBI chr14:78,514,886...78,545,483
Ensembl chr14:78,514,885...78,545,483
JBrowse link
G Tox thymocyte selection-associated high mobility group box IAGP MGI PMID:20818394 NCBI chr 4:6,686,353...6,991,557
Ensembl chr 4:6,686,353...6,991,557
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16725
    immune system phenotype 5608
      abnormal immune system morphology 4012
        abnormal immune system organ morphology 2403
          abnormal gut-associated lymphoid tissue morphology 108
            abnormal Peyer's patch morphology + 105
paths to the root