Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Projects (beta) QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal respiratory mucosa morphology
go back to main search page
Accession:MP:0002277 term browser browse the term
Definition:any structural anomaly of the mucous membrane lining the respiratory tract
Synonyms:exact_synonym: abnormal respiratory mucosal morphology;   respiratory mucosal dysplasia


show annotations for term's descendants           Sort by:
abnormal respiratory mucosa morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eda ectodysplasin-A IAGP MGI PMID:15973734 NCBI chr  X:99,019,212...99,444,366
Ensembl chr  X:99,019,212...99,444,368 		JBrowse link
G Edaradd EDAR associated via death domain IAGP MGI PMID:15973734 NCBI chr13:12,486,090...12,535,413
Ensembl chr13:12,487,513...12,535,319 		JBrowse link
G Rora RAR-related orphan receptor alpha IAGP MGI PMID:16973978 NCBI chr 9:68,560,627...69,295,528
Ensembl chr 9:68,561,068...69,295,528 		JBrowse link
G Scgb1a1 secretoglobin, family 1A, member 1 IAGP MGI PMID:8897914 NCBI chr19:9,061,006...9,065,320
Ensembl chr19:9,061,000...9,065,322 		JBrowse link
abnormal laryngeal mucosa goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spdef SAM pointed domain containing ets transcription factor IAGP MGI PMID:19759516 NCBI chr17:27,933,416...27,949,977
Ensembl chr17:27,933,326...27,947,929 		JBrowse link
abnormal lateral nasal gland morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eda ectodysplasin-A IAGP MGI PMID:27590203 NCBI chr  X:99,019,212...99,444,366
Ensembl chr  X:99,019,212...99,444,368 		JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:27590203 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:27590203 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Gnptab N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits IAGP MGI PMID:17962477 NCBI chr10:88,214,996...88,283,186
Ensembl chr10:88,214,994...88,283,191 		JBrowse link
abnormal nasal gland morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk13 cyclin dependent kinase 13 IAGP MGI PMID:31440507 NCBI chr13:17,885,309...17,979,960
Ensembl chr13:17,884,900...17,979,682 		JBrowse link
G Eda ectodysplasin-A IAGP MGI PMID:27590203 NCBI chr  X:99,019,212...99,444,366
Ensembl chr  X:99,019,212...99,444,368 		JBrowse link
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:27590203 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:27590203 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079 		JBrowse link
G Tfcp2l1 transcription factor CP2-like 1 IAGP MGI PMID:17079272 NCBI chr 1:118,555,646...118,612,898
Ensembl chr 1:118,555,675...118,612,898 		JBrowse link
abnormal nasal mucosa goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmnc geminin coiled-coil domain containing IAGP MGI PMID:26933123 NCBI chr16:26,775,985...26,810,424
Ensembl chr16:26,732,303...26,810,402 		JBrowse link
abnormal nasal mucosa morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:1380723 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Crk v-crk avian sarcoma virus CT10 oncogene homolog IAGP MGI PMID:16880535 NCBI chr11:75,570,020...75,599,254
Ensembl chr11:75,570,085...75,597,734 		JBrowse link
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:10433912 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085 		JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:7555726 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589 		JBrowse link
G Tnfrsf11a tumor necrosis factor receptor superfamily, member 11a, NFKB activator IAGP MGI PMID:10500098 NCBI chr 1:105,708,443...105,777,172
Ensembl chr 1:105,708,443...105,775,709 		JBrowse link
abnormal respiratory mucosa goblet cell morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 9030622O22Rik RIKEN cDNA 9030622O22 gene IAGP MGI PMID:30923168 NCBI chr 2:147,786,379...147,882,433
Ensembl chr 2:147,786,386...147,882,176 		JBrowse link
G C3ar1 complement component 3a receptor 1 IAGP MGI PMID:12421977 NCBI chr 6:122,824,099...122,833,116
Ensembl chr 6:122,824,097...122,833,120 		JBrowse link
G Cd163 CD163 antigen IAGP MGI PMID:26376364 NCBI chr 6:124,281,596...124,307,488
Ensembl chr 6:124,281,615...124,307,486 		JBrowse link
G Cish cytokine inducible SH2-containing protein IAGP MGI PMID:23727894 NCBI chr 9:107,173,858...107,179,983
Ensembl chr 9:107,173,225...107,179,983 		JBrowse link
G Clca1 chloride channel accessory 1 IAGP MGI PMID:16645179 NCBI chr 3:144,710,298...144,738,537
Ensembl chr 3:144,709,578...144,738,537 		JBrowse link
G Cxcr2 C-X-C motif chemokine receptor 2 IAGP MGI PMID:12626595 NCBI chr 1:74,193,153...74,200,405
Ensembl chr 1:74,193,150...74,200,405 		JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:30923168 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889 		JBrowse link
G Foxp3 forkhead box P3 IAGP MGI PMID:16275384 NCBI chr  X:7,445,915...7,461,482
Ensembl chr  X:7,439,883...7,461,484 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:21724990 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294 		JBrowse link
G Hoxa5 homeobox A5 IAGP MGI PMID:17003488 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567 		JBrowse link
G P2ry6 pyrimidinergic receptor P2Y, G-protein coupled, 6 IAGP MGI PMID:21724990 NCBI chr 7:100,586,837...100,628,528
Ensembl chr 7:100,586,837...100,623,856 		JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 IAGP MGI PMID:20011520 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
G Tacr1 tachykinin receptor 1 IAGP MGI PMID:15208590 NCBI chr 6:82,378,990...82,537,085
Ensembl chr 6:82,379,315...82,537,085 		JBrowse link
absent respiratory mucosa goblet cells term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sox2 SRY (sex determining region Y)-box 2 IAGP MGI PMID:20011520 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
G Spdef SAM pointed domain containing ets transcription factor IAGP MGI PMID:19759516 NCBI chr17:27,933,416...27,949,977
Ensembl chr17:27,933,326...27,947,929 		JBrowse link
decreased respiratory mucosa goblet cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpr2 formyl peptide receptor 2 IAGP MGI PMID:20200280 NCBI chr17:18,108,086...18,114,214
Ensembl chr17:18,108,086...18,114,214 		JBrowse link
G Igf1r insulin-like growth factor I receptor IAGP MGI PMID:28207927 NCBI chr 7:67,601,486...67,883,416
Ensembl chr 7:67,602,575...67,883,416 		JBrowse link
G Il33 interleukin 33 IAGP MGI PMID:22331917 NCBI chr19:29,902,513...29,938,118
Ensembl chr19:29,902,514...29,938,118 		JBrowse link
G Ndor1 NADPH dependent diflavin oxidoreductase 1 IAGP MGI PMID:28207927 NCBI chr 2:25,134,825...25,145,458
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034
Ensembl chr 2:25,134,833...25,146,034 		JBrowse link
G Serpinb3a serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3A IAGP MGI PMID:21126757 NCBI chr 1:106,973,317...106,980,033
Ensembl chr 1:106,973,317...106,980,033 		JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:26329601 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254 		JBrowse link
G Yy1 YY1 transcription factor IAGP MGI PMID:26329601 NCBI chr12:108,758,841...108,786,074
Ensembl chr12:108,758,899...108,786,074 		JBrowse link
increased respiratory mucosa goblet cell number term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:1380723 PMID:7540910 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767 		JBrowse link
G Foxa2 forkhead box A2 IAGP MGI PMID:14757645 NCBI chr 2:147,884,797...147,888,889
Ensembl chr 2:147,884,797...147,888,889 		JBrowse link
G Gmnc geminin coiled-coil domain containing IAGP MGI PMID:26882546 PMID:26933123 NCBI chr16:26,775,985...26,810,424
Ensembl chr16:26,732,303...26,810,402 		JBrowse link
G Hoxa5 homeobox A5 IAGP MGI PMID:17003488 PMID:17417799 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567 		JBrowse link
G Il4ra interleukin 4 receptor, alpha IAGP MGI PMID:19770271 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646 		JBrowse link
G Lpo lactoperoxidase IAGP MGI PMID:34127712 NCBI chr11:87,697,254...87,716,750
Ensembl chr11:87,697,254...87,719,115 		JBrowse link
G Nedd4l neural precursor cell expressed, developmentally down-regulated gene 4-like IAGP MGI PMID:21300902 NCBI chr18:65,017,551...65,350,888
Ensembl chr18:65,020,776...65,350,899 		JBrowse link
G Relb avian reticuloendotheliosis viral (v-rel) oncogene related B IAGP MGI PMID:10940923 NCBI chr 7:19,340,142...19,363,352
Ensembl chr 7:19,340,142...19,363,363 		JBrowse link
nasal gland degeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sec23b SEC23 homolog B, COPII coat complex component IAGP MGI PMID:22745161 NCBI chr 2:144,398,165...144,432,673
Ensembl chr 2:144,398,149...144,432,669 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16478
    respiratory system phenotype 1815
      abnormal respiratory system morphology 1254
        abnormal respiratory epithelium morphology 306
          abnormal respiratory mucosa morphology 42
            abnormal laryngeal mucosa morphology + 1
            abnormal nasal mucosa morphology + 13
            abnormal respiratory mucosa goblet cell morphology + 27
paths to the root