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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:abnormal bronchus morphology
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Accession:MP:0002264 term browser browse the term
Definition:any structural anomaly of the upper conducting airways of the lung; these airways arise from the terminus of the trachea
Synonyms:exact_synonym: abnormal bronchal morphology;   abnormal bronchi morphology;   bronchal dysplasia;   bronchi dysplasia;   bronchus dysplasia



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abnormal bronchus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin receptor IIB IAGP MGI PMID:9242489 NCBI chr 9:119,231,081...119,271,214
Ensembl chr 9:119,231,184...119,264,061
JBrowse link
G Cdkn1a cyclin dependent kinase inhibitor 1A IAGP MGI PMID:9925645 NCBI chr17:29,309,953...29,319,696
Ensembl chr17:29,309,950...29,319,701
JBrowse link
G Cdkn1c cyclin dependent kinase inhibitor 1C IAGP MGI PMID:9925645 NCBI chr 7:143,012,076...143,014,735
Ensembl chr 7:143,012,076...143,014,787
JBrowse link
G Cftr cystic fibrosis transmembrane conductance regulator IAGP MGI PMID:9399953 NCBI chr 6:18,170,686...18,322,769
Ensembl chr 6:18,170,686...18,322,767
JBrowse link
G Egfr epidermal growth factor receptor IAGP MGI PMID:7630400 PMID:9205141 NCBI chr11:16,700,153...16,868,158
Ensembl chr11:16,702,203...16,868,158
JBrowse link
G Fgf23 fibroblast growth factor 23 IAGP MGI PMID:17123805 NCBI chr 6:127,049,865...127,059,257
Ensembl chr 6:127,049,865...127,058,371
JBrowse link
G Il4ra interleukin 4 receptor, alpha IAGP MGI PMID:19770271 NCBI chr 7:125,151,443...125,178,646
Ensembl chr 7:125,151,292...125,178,646
JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:17369402 PMID:18493606 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965
JBrowse link
G Lamc1 laminin, gamma 1 IAGP MGI PMID:12015298 NCBI chr 1:153,094,668...153,208,532
Ensembl chr 1:153,094,668...153,208,532
JBrowse link
G Lefty1 left right determination factor 1 IAGP MGI PMID:9708731 NCBI chr 1:180,762,587...180,765,966
Ensembl chr 1:180,762,587...180,765,965
JBrowse link
G Med1 mediator complex subunit 1 IAGP MGI PMID:10882104 NCBI chr11:98,042,980...98,084,121
Ensembl chr11:98,042,980...98,084,119
JBrowse link
G Meox2 mesenchyme homeobox 2 IAGP MGI PMID:17369402 NCBI chr12:37,158,539...37,229,533
Ensembl chr12:37,158,539...37,229,533
JBrowse link
G Mtap methylthioadenosine phosphorylase IAGP MGI PMID:17534888 NCBI chr 4:89,055,607...89,099,327
Ensembl chr 4:89,055,359...89,099,318
JBrowse link
G Nkx2-1 NK2 homeobox 1 IAGP MGI PMID:8557195 NCBI chr12:56,578,741...56,583,570
Ensembl chr12:56,578,743...56,583,693
JBrowse link
G Notum notum palmitoleoyl-protein carboxylesterase IAGP MGI PMID:29428562 NCBI chr11:120,544,614...120,552,019
Ensembl chr11:120,544,614...120,552,001
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:18493606 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Robo1 roundabout guidance receptor 1 IAGP MGI PMID:11734623 NCBI chr16:71,824,406...72,844,379
Ensembl chr16:72,105,194...72,842,983
JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:15305287 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 IAGP MGI PMID:15254231 NCBI chr12:27,384,267...27,392,717
Ensembl chr12:27,384,263...27,392,573
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:18990706 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428
JBrowse link
G Traf4 TNF receptor associated factor 4 IAGP MGI PMID:11943846 NCBI chr11:78,049,249...78,056,405
Ensembl chr11:78,049,325...78,056,415
JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 IAGP MGI PMID:18990706 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750
JBrowse link
abnormal bronchial cartilage morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ano1 anoctamin 1, calcium activated chloride channel IAGP MGI PMID:18585372 NCBI chr 7:144,142,286...144,305,762
Ensembl chr 7:144,142,286...144,305,711
JBrowse link
G Mgp matrix Gla protein IAGP MGI PMID:9052783 NCBI chr 6:136,849,433...136,852,821
Ensembl chr 6:136,849,433...136,852,821
JBrowse link
G Serpinh1 serine (or cysteine) peptidase inhibitor, clade H, member 1 IAGP MGI PMID:22492985 NCBI chr 7:98,994,583...99,002,321
Ensembl chr 7:98,994,583...99,002,446
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II IAGP MGI PMID:18990706 NCBI chr 9:115,916,763...116,004,431
Ensembl chr 9:115,913,361...116,004,428
JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 IAGP MGI PMID:18990706 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750
JBrowse link
abnormal bronchus epithelium morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamtsl2 ADAMTS-like 2 IAGP MGI PMID:25762570 NCBI chr 2:26,969,348...26,998,993
Ensembl chr 2:26,969,391...26,998,993
JBrowse link
G Ank3 ankyrin 3, epithelial IAGP MGI PMID:23530049 NCBI chr10:69,234,608...69,863,266
Ensembl chr10:69,234,603...69,863,268
JBrowse link
G Hgsnat heparan-alpha-glucosaminide N-acetyltransferase IAGP MGI PMID:27491071 NCBI chr 8:26,432,495...26,466,704
Ensembl chr 8:26,434,481...26,466,781
JBrowse link
G Hoxa5 homeobox A5 IAGP MGI PMID:9441679 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567
JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:17369402 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965
JBrowse link
G Nkx2-1 NK2 homeobox 1 IAGP MGI PMID:8557195 NCBI chr12:56,578,741...56,583,570
Ensembl chr12:56,578,743...56,583,693
JBrowse link
G Nkx2-9 NK2 homeobox 9 IAGP MGI PMID:17079460 NCBI chr12:56,658,174...56,660,354
Ensembl chr12:56,658,174...56,660,069
JBrowse link
G Pam peptidylglycine alpha-amidating monooxygenase IAGP MGI PMID:16225857 NCBI chr 1:97,748,816...98,023,578
Ensembl chr 1:97,722,839...98,023,371
JBrowse link
G Rab27a RAB27A, member RAS oncogene family IAGP MGI PMID:21160031 NCBI chr 9:72,952,092...73,004,905
Ensembl chr 9:72,952,136...73,004,911
JBrowse link
G Rab27b RAB27B, member RAS oncogene family IAGP MGI PMID:21160031 NCBI chr18:70,112,202...70,274,704
Ensembl chr18:70,112,202...70,274,676
JBrowse link
G Sftpc surfactant associated protein C IAGP MGI PMID:12519727 NCBI chr14:70,758,381...70,761,521
Ensembl chr14:70,758,389...70,761,521
JBrowse link
abnormal left major bronchus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607068 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768
JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607068 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924
JBrowse link
abnormal right major bronchus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607068 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768
JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607068 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924
JBrowse link
bronchial epithelial hyperplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Errfi1 ERBB receptor feedback inhibitor 1 IAGP MGI PMID:19710174 NCBI chr 4:150,938,253...150,953,346
Ensembl chr 4:150,938,376...150,953,349
JBrowse link
G Gpr4 G protein-coupled receptor 4 IAGP MGI PMID:17145776 NCBI chr 7:18,946,463...18,958,101
Ensembl chr 7:18,946,463...18,958,099
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:20548776 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:27032374 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965
JBrowse link
G Krt19 keratin 19 IAGP MGI PMID:27032374 NCBI chr11:100,031,636...100,036,752
Ensembl chr11:100,031,636...100,039,491
JBrowse link
G Nkx2-9 NK2 homeobox 9 IAGP MGI PMID:17079460 NCBI chr12:56,658,174...56,660,354
Ensembl chr12:56,658,174...56,660,069
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:17921358 PMID:27032374 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560
JBrowse link
G Rb1 RB transcriptional corepressor 1 IAGP MGI PMID:7951317 NCBI chr14:73,430,298...73,563,446
Ensembl chr14:73,421,113...73,563,262
JBrowse link
G Robo1 roundabout guidance receptor 1 IAGP MGI PMID:11734623 NCBI chr16:71,824,406...72,844,379
Ensembl chr16:72,105,194...72,842,983
JBrowse link
G Scgb1a1 secretoglobin, family 1A, member 1 IAGP MGI PMID:20548776 NCBI chr19:9,061,006...9,065,320
Ensembl chr19:9,061,000...9,065,322
JBrowse link
G Thbs1 thrombospondin 1 IAGP MGI PMID:9657149 NCBI chr 2:117,942,357...117,957,614
Ensembl chr 2:117,942,357...117,957,614
JBrowse link
G Trp53 transformation related protein 53 IAGP MGI PMID:7951317 NCBI chr11:69,471,174...69,482,699
Ensembl chr11:69,471,185...69,482,699
JBrowse link
fused bronchial cartilage rings term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rara retinoic acid receptor, alpha IAGP MGI PMID:7607068 NCBI chr11:98,818,626...98,865,768
Ensembl chr11:98,818,644...98,865,768
JBrowse link
G Rarb retinoic acid receptor, beta IAGP MGI PMID:7607068 NCBI chr14:5,387,365...6,038,924
Ensembl chr14:5,650,540...6,038,924
JBrowse link
G Rarg retinoic acid receptor, gamma IAGP MGI PMID:7607068 NCBI chr15:102,143,373...102,165,891
Ensembl chr15:102,143,373...102,165,952
JBrowse link
impaired branching involved in bronchus morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 IAGP MGI PMID:9784490 PMID:15800000 PMID:19618463 NCBI chr13:118,851,199...118,928,651
Ensembl chr13:118,806,327...118,928,651
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IAGP MGI PMID:19618463 NCBI chr 7:129,764,181...129,868,538
Ensembl chr 7:129,764,181...132,725,079
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:19618463 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G Hoxa5 homeobox A5 IAGP MGI PMID:9441679 NCBI chr 6:52,178,768...52,181,437
Ensembl chr 6:52,178,734...52,181,567
JBrowse link
G Itga3 integrin alpha 3 IAGP MGI PMID:8951069 NCBI chr11:94,935,301...94,967,637
Ensembl chr11:94,935,300...94,967,627
JBrowse link
G Kras Kirsten rat sarcoma viral oncogene homolog IAGP MGI PMID:17369402 NCBI chr 6:145,162,425...145,197,631
Ensembl chr 6:145,162,425...145,195,965
JBrowse link
G Meox2 mesenchyme homeobox 2 IAGP MGI PMID:17369402 NCBI chr12:37,158,539...37,229,533
Ensembl chr12:37,158,539...37,229,533
JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived IAGP MGI PMID:1459449 PMID:8287798 PMID:8404543 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915
JBrowse link
G Nkx2-1 NK2 homeobox 1 IAGP MGI PMID:8557195 PMID:10208743 NCBI chr12:56,578,741...56,583,570
Ensembl chr12:56,578,743...56,583,693
JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:9768363 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 IAGP MGI PMID:17369402 NCBI chr14:106,129,381...106,134,559
Ensembl chr14:106,129,381...106,134,253
JBrowse link
G Tcf21 transcription factor 21 IAGP MGI PMID:10572052 NCBI chr10:22,693,162...22,696,042
Ensembl chr10:22,693,180...22,696,073
JBrowse link
G Twist2 twist basic helix-loop-helix transcription factor 2 IAGP MGI PMID:19618463 NCBI chr 1:91,729,183...91,775,756
Ensembl chr 1:91,729,183...91,775,750
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16659
    respiratory system phenotype 1832
      abnormal respiratory system morphology 1265
        abnormal lung morphology 823
          abnormal respiratory conducting tube morphology 111
            abnormal bronchus morphology 51
              abnormal branching involved in bronchus morphogenesis + 13
              abnormal bronchial cartilage morphology + 8
              abnormal bronchus epithelium morphology + 21
              abnormal left major bronchus morphology 2
              abnormal right major bronchus morphology 2
paths to the root