Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal trigeminal ganglion morphology
go back to main search page
Accession:MP:0001092 term browser browse the term
Definition:any structural anomaly of the group of sensory neuron cell bodies associated with the trigeminal nerve (fifth cranial nerve)
Synonyms:exact_synonym: abnormal Gasserian ganglion morphology;   abnormal cranial ganglion V morphology;   abnormal semi-lunar ganglion morphology;   abnormal semilunar ganglion morphology;   abnormal trigeminal ganglia morphology;   abnormal trigeminal ganglion of trigeminal (V) nerve morphology
 narrow_synonym: trigeminal ganglion dysplasia
 broad_synonym: Abnormal cranial ganglion morphology
 xref: HP:0410016


show annotations for term's descendants           Sort by:
abnormal trigeminal ganglion morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:21305688 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:17334657 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Chrd chordin IAGP MGI PMID:12810603 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134 		JBrowse link
G Col4a2 collagen, type IV, alpha 2 IEA MGI NCBI chr 8:11,362,878...11,499,287
Ensembl chr 8:11,362,805...11,499,287 		JBrowse link
G Crkl v-crk avian sarcoma virus CT10 oncogene homolog-like IAGP MGI PMID:11242111 NCBI chr16:17,269,849...17,305,304
Ensembl chr16:17,269,851...17,305,298 		JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 IAGP MGI PMID:11157778 NCBI chr19:37,686,186...37,689,984
Ensembl chr19:37,686,246...37,689,984 		JBrowse link
G Egr2 early growth response 2 IAGP MGI PMID:8224839 PMID:18524893 NCBI chr10:67,370,334...67,383,354
Ensembl chr10:67,371,305...67,378,018 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 IAGP MGI PMID:7477377 PMID:9362461 NCBI chr11:98,303,310...98,328,542
Ensembl chr11:98,303,296...98,328,542 		JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 IAGP MGI PMID:9362461 NCBI chr10:128,403,392...128,425,504
Ensembl chr10:128,403,392...128,425,521 		JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 IAGP MGI PMID:7477376 NCBI chr 1:68,071,063...69,147,756
Ensembl chr 1:68,071,345...69,147,218 		JBrowse link
G Foxc1 forkhead box C1 IEA MGI NCBI chr13:31,990,629...31,994,618
Ensembl chr13:31,990,616...31,996,459 		JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:23971992 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644 		JBrowse link
G Foxi2 forkhead box I2 IAGP MGI PMID:26550799 NCBI chr 7:135,012,096...135,015,351
Ensembl chr 7:135,012,037...135,015,351 		JBrowse link
G Foxi3 forkhead box I3 IAGP MGI PMID:26550799 NCBI chr 6:70,933,590...70,938,050
Ensembl chr 6:70,933,515...70,938,050 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 IAGP MGI PMID:15996652 NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18849985 PMID:23055936 PMID:23971992 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:18849985 PMID:23055936 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hhat hedgehog acyltransferase IAGP MGI PMID:23055936 NCBI chr 1:192,195,133...192,453,546
Ensembl chr 1:192,179,019...192,453,531 		JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:1346922 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IAGP MGI PMID:18849985 NCBI chr13:116,434,806...116,446,224
Ensembl chr13:116,434,817...116,446,225 		JBrowse link
G Kdr kinase insert domain protein receptor IAGP MGI PMID:21305688 NCBI chr 5:76,093,487...76,139,880
Ensembl chr 5:76,093,487...76,139,118 		JBrowse link
G Man2b1 mannosidase 2, alpha B1 IAGP MGI PMID:16014715 NCBI chr 8:85,809,941...85,824,215
Ensembl chr 8:85,809,899...85,824,911 		JBrowse link
G Med23 mediator complex subunit 23 IAGP MGI PMID:21305688 NCBI chr10:24,745,889...24,789,358
Ensembl chr10:24,745,884...24,789,579 		JBrowse link
G Ngfr nerve growth factor receptor (TNFR superfamily, member 16) IAGP MGI PMID:18772898 NCBI chr11:95,459,644...95,478,524
Ensembl chr11:95,459,644...95,478,561 		JBrowse link
G Notch1 notch 1 IAGP MGI PMID:21305688 NCBI chr 2:26,347,914...26,393,834
Ensembl chr 2:26,347,915...26,406,675 		JBrowse link
G Npc1 NPC intracellular cholesterol transporter 1 IAGP MGI PMID:24391715 NCBI chr18:12,322,751...12,369,851
Ensembl chr18:12,322,749...12,369,457 		JBrowse link
G Nrg1 neuregulin 1 IAGP MGI PMID:8643489 PMID:9789034 NCBI chr 8:32,299,493...33,381,858
Ensembl chr 8:32,304,579...33,374,825
Ensembl chr 8:32,304,579...33,374,825 		JBrowse link
G Pou4f1 POU domain, class 4, transcription factor 1 IAGP MGI PMID:15194866 NCBI chr14:104,699,111...104,705,554
Ensembl chr14:104,699,112...104,705,435 		JBrowse link
G Ptch1 patched 1 IAGP MGI PMID:21305688 NCBI chr13:63,656,142...63,721,274
Ensembl chr13:63,656,142...63,721,412 		JBrowse link
G Rap1gds1 RAP1, GTP-GDP dissociation stimulator 1 IAGP MGI PMID:10793158 NCBI chr 3:138,631,662...138,781,163
Ensembl chr 3:138,631,663...138,780,962 		JBrowse link
G Rb1 RB transcriptional corepressor 1 IAGP MGI PMID:16449662 NCBI chr14:73,430,298...73,563,446
Ensembl chr14:73,421,113...73,563,262 		JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) IAGP MGI PMID:17473173 PMID:21305688 NCBI chr 1:16,176,106...16,202,774
Ensembl chr 1:16,175,998...16,203,958 		JBrowse link
G Scube1 signal peptide, CUB domain, EGF-like 1 IAGP MGI PMID:18303018 NCBI chr15:83,486,784...83,609,252
Ensembl chr15:83,489,200...83,609,222 		JBrowse link
G Six1 sine oculis-related homeobox 1 IAGP MGI PMID:16938278 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661 		JBrowse link
G Sostdc1 sclerostin domain containing 1 IAGP MGI PMID:18538759 NCBI chr12:36,364,168...36,368,451
Ensembl chr12:36,364,138...36,368,451 		JBrowse link
G Trp73 transformation related protein 73 IAGP MGI PMID:19805388 NCBI chr 4:154,140,706...154,224,332
Ensembl chr 4:154,140,706...154,224,665 		JBrowse link
G Vac14 Vac14 homolog (S. cerevisiae) IAGP MGI PMID:17956977 NCBI chr 8:111,345,161...111,447,030
Ensembl chr 8:111,345,217...111,447,030 		JBrowse link
G Zic5 zinc finger protein of the cerebellum 5 IAGP MGI PMID:15736266 NCBI chr14:122,696,572...122,703,127
Ensembl chr14:122,694,207...122,703,089 		JBrowse link
absent trigeminal ganglion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha IAGP MGI PMID:10508523 NCBI chr 7:101,507,551...101,519,974
Ensembl chr 7:101,507,538...101,519,995 		JBrowse link
G Meis2 Meis homeobox 2 IAGP MGI PMID:26545946 NCBI chr 2:115,691,745...115,897,925
Ensembl chr 2:115,693,545...115,896,320 		JBrowse link
G Neurog1 neurogenin 1 IAGP MGI PMID:9539122 NCBI chr13:56,398,291...56,399,993
Ensembl chr13:56,398,291...56,399,976 		JBrowse link
enlarged trigeminal ganglion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hipk2 homeodomain interacting protein kinase 2 IAGP MGI PMID:15492043 NCBI chr 6:38,664,447...38,853,236
Ensembl chr 6:38,671,325...38,853,099 		JBrowse link
G Ptk7 PTK7 protein tyrosine kinase 7 IAGP MGI PMID:20704721 NCBI chr17:46,875,377...46,940,975
Ensembl chr17:46,875,397...46,940,430 		JBrowse link
small trigeminal ganglion term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Avil advillin IAGP MGI PMID:30917309 NCBI chr10:126,835,933...126,856,857
Ensembl chr10:126,836,578...126,856,863 		JBrowse link
G Bdnf brain derived neurotrophic factor IAGP MGI PMID:7746324 PMID:7746325 PMID:8139657 PMID:9364058 PMID:10681461 NCBI chr 2:109,505,045...109,557,388
Ensembl chr 2:109,505,045...109,557,352 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 IAGP MGI PMID:18440989 NCBI chr10:17,598,452...17,601,422
Ensembl chr10:17,598,966...17,601,422 		JBrowse link
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:10433912 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085 		JBrowse link
G Efnb2 ephrin B2 IAGP MGI PMID:17223098 NCBI chr 8:8,667,235...8,711,242
Ensembl chr 8:8,667,434...8,711,242 		JBrowse link
G Gata3 GATA binding protein 3 IAGP MGI PMID:34383890 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:23055936 PMID:26545946 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,055,336 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:18440989 PMID:23055936 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hhat hedgehog acyltransferase IAGP MGI PMID:23055936 NCBI chr 1:192,195,133...192,453,546
Ensembl chr 1:192,179,019...192,453,531 		JBrowse link
G Kifbp kinesin family binding protein IEA MGI NCBI chr10:62,394,249...62,414,846
Ensembl chr10:62,374,405...62,414,236 		JBrowse link
G Mecom MDS1 and EVI1 complex locus IAGP MGI PMID:9256345 NCBI chr 3:30,005,445...30,563,937
Ensembl chr 3:30,005,445...30,602,157 		JBrowse link
G Meis2 Meis homeobox 2 IAGP MGI PMID:26545946 NCBI chr 2:115,691,745...115,897,925
Ensembl chr 2:115,693,545...115,896,320 		JBrowse link
G Morc2a microrchidia 2A IEA MGI NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477 		JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived IAGP MGI PMID:1459449 PMID:1459450 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915 		JBrowse link
G Nedd4 neural precursor cell expressed, developmentally down-regulated 4 IAGP MGI PMID:24080509 NCBI chr 9:72,569,613...72,657,133
Ensembl chr 9:72,569,628...72,657,134 		JBrowse link
G Ntf3 neurotrophin 3 IAGP MGI PMID:7514502 PMID:7712171 PMID:8208292 PMID:9364058 PMID:9405689 More... NCBI chr 6:126,078,375...126,143,703
Ensembl chr 6:126,078,375...126,143,873 		JBrowse link
G Ntf5 neurotrophin 5 IAGP MGI PMID:7746324 PMID:7746325 PMID:10681461 NCBI chr 7:45,063,119...45,066,603
Ensembl chr 7:45,063,119...45,066,603 		JBrowse link
G Ntrk1 neurotrophic tyrosine kinase, receptor, type 1 IAGP MGI PMID:8145823 NCBI chr 3:87,685,551...87,702,549
Ensembl chr 3:87,685,551...87,702,469 		JBrowse link
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 IAGP MGI PMID:8402890 PMID:12654337 NCBI chr13:58,954,363...59,281,782
Ensembl chr13:58,954,383...59,281,784 		JBrowse link
G Ntrk3 neurotrophic tyrosine kinase, receptor, type 3 IAGP MGI PMID:9405689 NCBI chr 7:77,825,711...78,228,865
Ensembl chr 7:77,825,707...78,387,760 		JBrowse link
G Phox2a paired-like homeobox 2a IAGP MGI PMID:10882479 NCBI chr 7:101,467,520...101,471,933
Ensembl chr 7:101,467,520...101,471,933 		JBrowse link
G Phox2b paired-like homeobox 2b IAGP MGI PMID:16319924 NCBI chr 5:67,251,751...67,256,399
Ensembl chr 5:67,251,742...67,256,644 		JBrowse link
G Pou4f1 POU domain, class 4, transcription factor 1 IAGP MGI PMID:8876243 PMID:8955272 PMID:10357931 NCBI chr14:104,699,111...104,705,554
Ensembl chr14:104,699,112...104,705,435 		JBrowse link
G Prdm12 PR domain containing 12 IAGP MGI PMID:30917309 NCBI chr 2:31,526,767...31,545,798
Ensembl chr 2:31,530,049...31,545,807 		JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 IAGP MGI PMID:10888597 NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043 		JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:8622765 PMID:8622766 PMID:26545946 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A IAGP MGI PMID:21262811 NCBI chr19:55,304,489...55,615,893
Ensembl chr19:55,304,727...55,615,741 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B IAGP MGI PMID:21262811 NCBI chr12:79,202,791...79,219,428
Ensembl chr12:79,202,791...79,219,441 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 17096
    nervous system phenotype 4654
      abnormal nervous system morphology 3677
        abnormal somatic nervous system morphology 1269
          abnormal cranial ganglia morphology 194
            abnormal trigeminal ganglion morphology 66
              absent trigeminal ganglion 3
              enlarged trigeminal ganglion + 2
              small trigeminal ganglion 28
              trigeminal ganglion degeneration 0
Path 2
Term Annotations click to browse term
  mammalian phenotype 17096
    nervous system phenotype 4654
      abnormal nervous system morphology 3677
        abnormal somatic nervous system morphology 1269
          abnormal somatic sensory system morphology 911
            abnormal sensory ganglion morphology 279
              abnormal trigeminal ganglion morphology 66
                absent trigeminal ganglion 3
                enlarged trigeminal ganglion + 2
                small trigeminal ganglion 28
                trigeminal ganglion degeneration 0
paths to the root