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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal vagus nerve morphology
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Accession:MP:0001074 term browser browse the term
Definition:any structural anomaly of the autonomic, sensory and motor axons of the tenth cranial nerve; it is primarily sensory but also has visceromotor components; it originates in the brain stem and controls many autonomic functions of the heart, lungs, stomach, pharynx, larynx, trachea, esophagus and other gastrointestinal tract components, and also controls some motor functions such as speech; the sensory branches mediate sensation from the pharynx, larynx, thorax and abdomen; it also innervates taste buds in the epiglottis
Synonyms:exact_synonym: abnormal CN-X morphology;   abnormal vagal nerve morphology;   vagus nerve abnormalities;   vagus nerve dysplasia


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abnormal vagus nerve morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:19855134 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Cln8 CLN8 transmembrane ER and ERGIC protein IAGP MGI PMID:3783318 NCBI chr 8:14,931,335...14,951,720
Ensembl chr 8:14,931,335...14,951,720 		JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:11262227 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573 		JBrowse link
G Dst dystonin IAGP MGI PMID:16289886 NCBI chr 1:33,946,969...34,347,743
Ensembl chr 1:33,947,306...34,347,742 		JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:35593225 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812 		JBrowse link
G Egr2 early growth response 2 IAGP MGI PMID:7903221 NCBI chr10:67,370,334...67,383,354
Ensembl chr10:67,371,305...67,378,018 		JBrowse link
G Erbb2 erb-b2 receptor tyrosine kinase 2 IAGP MGI PMID:7477377 PMID:9362461 NCBI chr11:98,303,310...98,328,542
Ensembl chr11:98,303,296...98,328,542 		JBrowse link
G Fbln1 fibulin 1 IAGP MGI PMID:18538758 NCBI chr15:85,090,150...85,170,495
Ensembl chr15:85,090,150...85,170,736 		JBrowse link
G Grb2 growth factor receptor bound protein 2 IAGP MGI PMID:11369229 NCBI chr11:115,534,871...115,599,423
Ensembl chr11:115,534,871...115,599,423 		JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:11262227 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443 		JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:1346922 PMID:1680563 PMID:15367676 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Hoxa2 homeobox A2 IAGP MGI PMID:7903600 NCBI chr 6:52,139,389...52,141,808
Ensembl chr 6:52,139,397...52,141,811 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 IAGP MGI PMID:25975378 NCBI chr  X:52,076,955...52,110,537
Ensembl chr  X:52,077,014...52,110,536 		JBrowse link
G Megf8 multiple EGF-like-domains 8 IAGP MGI PMID:24052814 NCBI chr 7:25,016,589...25,065,342
Ensembl chr 7:25,016,589...25,065,342 		JBrowse link
G Mesp1 mesoderm posterior 1 IAGP MGI PMID:16914493 NCBI chr 7:79,441,989...79,443,338
Ensembl chr 7:79,441,989...79,443,536 		JBrowse link
G Nkx2-9 NK2 homeobox 9 IAGP MGI PMID:12571110 NCBI chr12:56,658,174...56,660,354
Ensembl chr12:56,658,174...56,660,069 		JBrowse link
G Nrg1 neuregulin 1 IAGP MGI PMID:8643489 NCBI chr 8:32,299,493...33,381,858
Ensembl chr 8:32,304,579...33,374,825
Ensembl chr 8:32,304,579...33,374,825 		JBrowse link
G Phox2b paired-like homeobox 2b IAGP MGI PMID:10704382 PMID:25975378 NCBI chr 5:67,251,751...67,256,399
Ensembl chr 5:67,251,742...67,256,644 		JBrowse link
G Plxna4 plexin A4 IAGP MGI PMID:15814794 NCBI chr 6:32,121,478...32,565,127
Ensembl chr 6:32,121,203...32,565,127 		JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A IAGP MGI PMID:9331345 NCBI chr 5:13,174,789...13,653,453
Ensembl chr 5:13,175,381...13,652,533 		JBrowse link
G Slc5a3 solute carrier family 5 (inositol transporters), member 3 IAGP MGI PMID:16174787 NCBI chr16:91,855,210...91,884,361
Ensembl chr16:91,855,210...91,884,361 		JBrowse link
G Snrpb small nuclear ribonucleoprotein B IAGP MGI PMID:35593225 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11971873 PMID:16914493 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
abnormal intrathoracic topology of vagus nerve term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 IEA MGI NCBI chr 1:87,683,730...87,720,150
Ensembl chr 1:87,683,592...87,720,150 		JBrowse link
G B9d2 B9 protein domain 2 IEA MGI NCBI chr 7:25,380,205...25,385,987
Ensembl chr 7:25,380,205...25,385,983 		JBrowse link
G Cfap53 cilia and flagella associated protein 53 IEA MGI NCBI chr18:74,416,171...74,493,055
Ensembl chr18:74,416,161...74,493,057 		JBrowse link
G Gm5544 predicted gene 5544 IEA MGI NCBI chr 3:97,837,489...97,874,334
Ensembl chr 3:97,837,489...97,874,336 		JBrowse link
G Morc2a microrchidia 2A IEA MGI NCBI chr11:3,599,132...3,640,477
Ensembl chr11:3,599,191...3,640,477 		JBrowse link
G Rpgrip1l Rpgrip1-like IEA MGI NCBI chr 8:91,943,658...92,039,919
Ensembl chr 8:91,943,658...92,039,890 		JBrowse link
absent vagus nerve term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd2 bromodomain containing 2 IEA MGI NCBI chr17:34,330,993...34,341,581
Ensembl chr17:34,330,997...34,341,608 		JBrowse link
fusion of glossopharyngeal and vagus nerve term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 IAGP MGI PMID:12563036 NCBI chr 9:71,123,071...71,203,525
Ensembl chr 9:71,123,071...71,203,525 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IAGP MGI PMID:19855134 NCBI chr 4:8,690,345...8,868,449
Ensembl chr 4:8,690,406...8,867,659 		JBrowse link
G Egr2 early growth response 2 IAGP MGI PMID:8224839 PMID:19244508 NCBI chr10:67,370,334...67,383,354
Ensembl chr10:67,371,305...67,378,018 		JBrowse link
G Fbln1 fibulin 1 IAGP MGI PMID:18538758 NCBI chr15:85,090,150...85,170,495
Ensembl chr15:85,090,150...85,170,736 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 IAGP MGI PMID:15996652 NCBI chr 1:89,855,684...89,858,898
Ensembl chr 1:89,855,678...89,858,901 		JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:15367676 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297 		JBrowse link
G Hoxa3 homeobox A3 IAGP MGI PMID:9441667 PMID:20498049 NCBI chr 6:52,146,039...52,190,316
Ensembl chr 6:52,146,042...52,190,316 		JBrowse link
G Hoxb3 homeobox B3 IAGP MGI PMID:9441667 NCBI chr11:96,197,927...96,238,756
Ensembl chr11:96,214,152...96,238,756 		JBrowse link
G Hoxd3 homeobox D3 IAGP MGI PMID:9441667 NCBI chr 2:74,542,337...74,578,615
Ensembl chr 2:74,542,271...74,578,786 		JBrowse link
G Lmo4 LIM domain only 4 IAGP MGI PMID:14966286 NCBI chr 3:143,894,291...143,911,016
Ensembl chr 3:143,894,291...143,910,981 		JBrowse link
G Mafb MAF bZIP transcription factor B IAGP MGI PMID:27181683 NCBI chr 2:160,205,597...160,208,985
Ensembl chr 2:160,205,623...160,208,985 		JBrowse link
G Nkx2-9 NK2 homeobox 9 IAGP MGI PMID:12571110 NCBI chr12:56,658,174...56,660,354
Ensembl chr12:56,658,174...56,660,069 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11971873 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
thin vagus nerve term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kifbp kinesin family binding protein IEA MGI NCBI chr10:62,394,249...62,414,846
Ensembl chr10:62,374,405...62,414,236 		JBrowse link
vagus nerve compression term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G D930028M14Rik RIKEN cDNA D930028M14 gene IEA MGI NCBI chr 7:24,851,882...24,856,055
Ensembl chr 7:24,851,846...24,856,054 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16954
    nervous system phenotype 4632
      abnormal nervous system morphology 3664
        abnormal somatic nervous system morphology 1289
          abnormal cranial nerve morphology 383
            abnormal vagus nerve morphology 39
              abnormal vagus nerve topology + 6
              absent vagus nerve 1
              fusion of glossopharyngeal and vagus nerve 13
              thin vagus nerve 1
              vagus nerve compression 1
paths to the root