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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal medulla oblongata morphology
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Accession:MP:0000846 term browser browse the term
Definition:any structural anomaly in the most caudal region of the brainstem that lies directly rostral to the spinal cord; includes regions responsible for autonomic functions such as digestion, breathing and control of heart rate
Synonyms:exact_synonym: abnormal myelencephalon morphology
 narrow_synonym: medulla oblongata dysplasia;   myelencephalon dysplasia
 alt_id: MP:0000845


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abnormal medulla oblongata morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrn attractin IAGP MGI PMID:11444801 NCBI chr 2:130,734,363...130,872,249
Ensembl chr 2:130,748,415...130,872,253 		JBrowse link
G Cacna2d2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 IAGP MGI PMID:4177347 NCBI chr 9:107,276,948...107,406,545
Ensembl chr 9:107,276,811...107,406,542 		JBrowse link
G Dbx1 developing brain homeobox 1 IAGP MGI PMID:20680010 NCBI chr 7:49,281,247...49,286,583
Ensembl chr 7:49,281,247...49,286,597 		JBrowse link
G Galc galactosylceramidase IAGP MGI PMID:12270695 NCBI chr12:98,168,543...98,226,565
Ensembl chr12:98,168,553...98,225,718 		JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IAGP MGI PMID:6049666 NCBI chr13:15,638,308...15,904,611
Ensembl chr13:15,637,820...15,904,611 		JBrowse link
G Hgs HGF-regulated tyrosine kinase substrate IAGP MGI PMID:6024256 NCBI chr11:120,358,431...120,374,810
Ensembl chr11:120,358,461...120,374,805 		JBrowse link
G Lbx1 ladybird homeobox 1 IAGP MGI PMID:17475798 NCBI chr19:45,221,123...45,225,280
Ensembl chr19:45,221,123...45,224,251 		JBrowse link
G Lpo lactoperoxidase IAGP MGI PMID:34127712 NCBI chr11:87,697,254...87,716,750
Ensembl chr11:87,697,254...87,719,115 		JBrowse link
G Mapt microtubule-associated protein tau IAGP MGI PMID:17475798 NCBI chr11:104,120,235...104,222,916
Ensembl chr11:104,122,216...104,222,916 		JBrowse link
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived IAGP MGI PMID:1459449 NCBI chr12:12,986,094...12,991,837
Ensembl chr12:12,986,094...12,991,915 		JBrowse link
G Ndufs4 NADH:ubiquinone oxidoreductase core subunit S4 IAGP MGI PMID:22653057 NCBI chr13:114,424,331...114,524,630
Ensembl chr13:114,424,331...114,524,794 		JBrowse link
G Phox2b paired-like homeobox 2b IAGP MGI PMID:14627719 NCBI chr 5:67,251,751...67,256,399
Ensembl chr 5:67,251,742...67,256,644 		JBrowse link
G Pou4f1 POU domain, class 4, transcription factor 1 IAGP MGI PMID:8876243 NCBI chr14:104,699,111...104,705,554
Ensembl chr14:104,699,112...104,705,435 		JBrowse link
G Rap1gds1 RAP1, GTP-GDP dissociation stimulator 1 IAGP MGI PMID:10793158 NCBI chr 3:138,631,662...138,781,163
Ensembl chr 3:138,631,663...138,780,962 		JBrowse link
G Robo3 roundabout guidance receptor 3 IAGP MGI PMID:20680010 NCBI chr 9:37,327,341...37,344,730
Ensembl chr 9:37,326,965...37,344,542 		JBrowse link
G Scube1 signal peptide, CUB domain, EGF-like 1 IAGP MGI PMID:18303018 NCBI chr15:83,486,784...83,609,252
Ensembl chr15:83,489,200...83,609,222 		JBrowse link
G Trappc9 trafficking protein particle complex 9 IAGP MGI PMID:33208359 NCBI chr15:72,461,469...72,933,086
Ensembl chr15:72,461,469...72,933,053 		JBrowse link
G Ube4b ubiquitination factor E4B IAGP MGI PMID:16314518 NCBI chr 4:149,412,873...149,512,618
Ensembl chr 4:149,412,873...149,511,206 		JBrowse link
G Uchl1 ubiquitin carboxy-terminal hydrolase L1 IAGP MGI PMID:3340629 NCBI chr 5:66,833,464...66,844,577
Ensembl chr 5:66,833,434...66,844,577 		JBrowse link
G Vac14 Vac14 homolog (S. cerevisiae) IAGP MGI PMID:17956977 NCBI chr 8:111,345,161...111,447,030
Ensembl chr 8:111,345,217...111,447,030 		JBrowse link
G Zfp423 zinc finger protein 423 IAGP MGI PMID:17524391 NCBI chr 8:88,388,438...88,688,665
Ensembl chr 8:88,388,438...88,686,223 		JBrowse link
abnormal hypoglossal nucleus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx6-2 NK6 homeobox 2 IAGP MGI PMID:18216204 NCBI chr 7:139,159,292...139,162,726
Ensembl chr 7:139,159,292...139,162,713 		JBrowse link
G Ret ret proto-oncogene IAGP MGI PMID:18216204 NCBI chr 6:118,128,709...118,174,705
Ensembl chr 6:118,128,706...118,174,679 		JBrowse link
abnormal inferior olivary complex morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif2a kinesin family member 2A IAGP MGI PMID:12887924 NCBI chr13:107,095,504...107,158,931
Ensembl chr13:107,095,504...107,158,634 		JBrowse link
G Map1b microtubule-associated protein 1B IAGP MGI PMID:11581286 NCBI chr13:99,557,972...99,653,110
Ensembl chr13:99,557,954...99,653,048 		JBrowse link
G Map2 microtubule-associated protein 2 IAGP MGI PMID:11581286 NCBI chr 1:66,214,337...66,481,742
Ensembl chr 1:66,214,432...66,481,742 		JBrowse link
G Olig3 oligodendrocyte transcription factor 3 IAGP MGI PMID:18829970 NCBI chr10:19,232,287...19,234,352
Ensembl chr10:19,232,281...19,234,352 		JBrowse link
G Pou4f1 POU domain, class 4, transcription factor 1 IAGP MGI PMID:8955272 NCBI chr14:104,699,111...104,705,554
Ensembl chr14:104,699,112...104,705,435 		JBrowse link
G Rora RAR-related orphan receptor alpha IAGP MGI PMID:1511513 PMID:2231177 PMID:7842506 NCBI chr 9:68,560,627...69,295,528
Ensembl chr 9:68,561,068...69,295,528 		JBrowse link
abnormal pre-Botzinger complex morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 IAGP MGI PMID:20680010 NCBI chr 7:49,281,247...49,286,583
Ensembl chr 7:49,281,247...49,286,597 		JBrowse link
G Kdm6b KDM1 lysine (K)-specific demethylase 6B IAGP MGI PMID:23103168 NCBI chr11:69,289,334...69,311,188
Ensembl chr11:69,289,334...69,304,501 		JBrowse link
G Robo3 roundabout guidance receptor 3 IAGP MGI PMID:20680010 NCBI chr 9:37,327,341...37,344,730
Ensembl chr 9:37,326,965...37,344,542 		JBrowse link
abnormal pyramidal decussation morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 IAGP MGI PMID:18957218 NCBI chr 3:18,108,489...18,111,678
Ensembl chr 3:18,108,338...18,111,681 		JBrowse link
G Dcc DCC netrin 1 receptor IAGP MGI PMID:12451134 NCBI chr18:71,386,703...72,484,299
Ensembl chr18:71,386,705...72,484,140 		JBrowse link
G Ntn1 netrin 1 IAGP MGI PMID:12451134 NCBI chr11:68,100,190...68,277,652
Ensembl chr11:68,100,190...68,291,649 		JBrowse link
G Unc5c unc-5 netrin receptor C IAGP MGI PMID:12451134 NCBI chr 3:141,171,360...141,540,685
Ensembl chr 3:141,170,977...141,540,685 		JBrowse link
abnormal retrotrapezoid nucleus morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 IAGP MGI PMID:21900566 NCBI chr10:67,370,334...67,383,354
Ensembl chr10:67,371,305...67,378,018 		JBrowse link
G Kcnk5 potassium channel, subfamily K, member 5 IAGP MGI PMID:20133877 NCBI chr14:20,190,125...20,231,850
Ensembl chr14:20,190,125...20,231,877 		JBrowse link
G Phox2b paired-like homeobox 2b IAGP MGI PMID:20133877 PMID:21900566 PMID:22922260 PMID:25975378 NCBI chr 5:67,251,751...67,256,399
Ensembl chr 5:67,251,742...67,256,644 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16965
    nervous system phenotype 4640
      abnormal nervous system morphology 3672
        abnormal brain morphology 2143
          abnormal brainstem morphology 299
            abnormal medulla oblongata morphology 35
              abnormal hypoglossal nucleus morphology 2
              abnormal inferior olivary complex morphology 6
              abnormal medulla oblongata anterior median fissure morphology + 4
              abnormal pre-Botzinger complex morphology 3
              abnormal retrotrapezoid nucleus morphology 3
paths to the root