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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:abnormal cerebral cortex morphology
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Accession:MP:0000788 term browser browse the term
Definition:any structural anomaly of thin layer of grey matter on the surface of the cerebral hemisphere that folds into gyri; it is responsible for intellectual faculties and higher mental functions
Synonyms:exact_synonym: abnormal pallium morphology;   cerebral cortex dysplasia;   pallium dysplasia



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abnormal neocortex morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Depdc5 DEP domain containing 5, GATOR1 subcomplex subunit IMP RGD PMID:26873552 RGD:11573213 NCBI chr14:77,732,297...77,862,924
Ensembl chr14:77,732,297...77,862,794
JBrowse link
G Depdc5em1Kyo DEP domain containing 5, GATOR1 subcomplex subunit; TALEN induced mutant1, Kyo IMP RGD PMID:26873552 RGD:11573213
G Depdc5em2Kyo DEP domain containing 5, GATOR1 subcomplex subunit; TALEN induced mutant2, Kyo IMP RGD PMID:26873552 RGD:11573213
decreased cerebral cortex average cell area term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc9a6 solute carrier family 9 member A6 IMP RGD PMID:34928329 RGD:151664747 NCBI chr  X:134,430,677...134,486,747
Ensembl chr  X:134,420,756...134,485,375
JBrowse link
G Slc9a6 em1Moro solute carrier family 9 member A6;CRISPR/Cas9 induced mutant1, Moro IMP RGD PMID:34928329 RGD:151664747
loss of cortex neurons term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc9a6 solute carrier family 9 member A6 IMP RGD PMID:34928329 RGD:151664747 NCBI chr  X:134,430,677...134,486,747
Ensembl chr  X:134,420,756...134,485,375
JBrowse link
G Slc9a6 em1Moro solute carrier family 9 member A6;CRISPR/Cas9 induced mutant1, Moro IMP RGD PMID:34928329 RGD:151664747

Term paths to the root
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  mammalian phenotype 5400
    nervous system phenotype 365
      abnormal nervous system morphology 212
        abnormal brain morphology 139
          abnormal forebrain morphology 82
            abnormal telencephalon morphology 28
              abnormal cerebral hemisphere morphology 18
                abnormal cerebral cortex morphology 8
                  abnormal cerebral cortex average cell area + 3
                  abnormal cerebral cortex cell density + 0
                  abnormal cerebral cortex cell number + 0
                  abnormal cerebral cortex pyramidal cell morphology + 0
                  abnormal cerebral cortex total cell area + 0
                  abnormal cingulate gyrus morphology + 0
                  abnormal neocortex morphology + 5
                  abnormal orbitofrontal cortex morphology 0
                  abnormal premotor cortex morphology + 0
                  abnormal primary motor cortex morphology + 0
                  abnormal somatosensory cortex morphology + 0
                  abnormal stratification in cerebral cortex 0
                  abnormal visual cortex morphology 0
                  cerebral cortex microinfarct 0
                  delaminated cerebral cortex 0
                  loss of cortex neurons 3
                  thickened cerebral cortex 0
                  thin cerebral cortex 0
paths to the root