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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:cochlear degeneration
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Accession:MP:0000032 term browser browse the term
Definition:a retrogressive impairment of function or destruction of the spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound


show annotations for term's descendants           Sort by:
cochlear degeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 IAGP MGI PMID:10441500 PMID:10687933 NCBI chr 6:113,720,803...114,019,574
Ensembl chr 6:113,720,792...114,019,574 		JBrowse link
G Casp3 caspase 3 IAGP MGI PMID:11251216 NCBI chr 8:47,070,326...47,092,733
Ensembl chr 8:47,070,326...47,092,724 		JBrowse link
G Fbxo2 F-box protein 2 IAGP MGI PMID:17494702 NCBI chr 4:148,244,605...148,250,874
Ensembl chr 4:148,245,078...148,250,881 		JBrowse link
G Gjb2 gap junction protein, beta 2 IAGP MGI PMID:12121617 NCBI chr14:57,336,059...57,342,159
Ensembl chr14:57,336,057...57,342,159 		JBrowse link
G Lama2 laminin, alpha 2 IAGP MGI PMID:12126936 NCBI chr10:26,857,281...27,493,021
Ensembl chr10:26,856,032...27,495,754 		JBrowse link
G Myo6 myosin VI IAGP MGI PMID:5980120 NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011 		JBrowse link
G Myo7a myosin VIIA IAGP MGI PMID:31824252 NCBI chr 7:97,700,261...97,768,730
Ensembl chr 7:97,700,267...97,768,731 		JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 IAGP MGI PMID:12808454 NCBI chr14:7,669,819...7,766,808
Ensembl chr14:7,669,823...7,767,484 		JBrowse link
G Tmc1 transmembrane channel-like gene family 1 IAGP MGI PMID:22330676 NCBI chr19:20,760,820...20,931,566
Ensembl chr19:20,760,822...20,931,566 		JBrowse link
G Tmtc4 transmembrane and tetratricopeptide repeat containing 4 IAGP MGI PMID:30188326 NCBI chr14:123,156,383...123,220,697
Ensembl chr14:123,156,383...123,221,447 		JBrowse link
organ of Corti degeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 IAGP MGI PMID:16775142 NCBI chr13:81,243,187...81,781,504
Ensembl chr13:81,243,187...81,781,273 		JBrowse link
G Ap1g1 adaptor protein complex AP-1, gamma 1 subunit IAGP MGI PMID:27090238 NCBI chr 8:110,505,215...110,590,842
Ensembl chr 8:110,505,186...110,590,836 		JBrowse link
G Ap3d1 adaptor-related protein complex 3, delta 1 subunit IAGP MGI PMID:4448900 NCBI chr10:80,542,790...80,578,137
Ensembl chr10:80,542,790...80,578,098 		JBrowse link
G Apoe apolipoprotein E IAGP MGI PMID:16051453 NCBI chr 7:19,430,169...19,434,326
Ensembl chr 7:19,430,034...19,433,113 		JBrowse link
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 IAGP MGI PMID:18974863 PMID:21325754 NCBI chr 6:113,720,803...114,019,574
Ensembl chr 6:113,720,792...114,019,574 		JBrowse link
G Atp8b1 ATPase, class I, type 8B, member 1 IAGP MGI PMID:19478059 NCBI chr18:64,662,050...64,794,342
Ensembl chr18:64,662,038...64,794,338 		JBrowse link
G Cdh23 cadherin related 23 (otocadherin) IAGP MGI PMID:14759567 PMID:19270079 PMID:21689626 PMID:22326520 NCBI chr10:60,138,527...60,532,291
Ensembl chr10:60,138,527...60,532,269 		JBrowse link
G Clic5 chloride intracellular channel 5 IAGP MGI PMID:17021174 NCBI chr17:44,445,671...44,591,059
Ensembl chr17:44,445,659...44,591,059 		JBrowse link
G Clrn1 clarin 1 IAGP MGI PMID:19414487 NCBI chr 3:58,751,449...58,792,633
Ensembl chr 3:58,751,449...58,792,761 		JBrowse link
G Col11a1 collagen, type XI, alpha 1 IAGP MGI PMID:1952599 NCBI chr 3:113,823,933...114,014,405
Ensembl chr 3:113,824,189...114,014,367 		JBrowse link
G Ednrb endothelin receptor type B IAGP MGI PMID:11773966 NCBI chr14:104,052,051...104,083,248
Ensembl chr14:104,052,061...104,081,838 		JBrowse link
G Elmod1 ELMO/CED-12 domain containing 1 IAGP MGI PMID:22558334 NCBI chr 9:53,818,741...53,882,628
Ensembl chr 9:53,818,741...53,882,585 		JBrowse link
G Espn espin IAGP MGI PMID:1636414 NCBI chr 4:152,204,788...152,236,871
Ensembl chr 4:152,204,788...152,236,828 		JBrowse link
G Gata3 GATA binding protein 3 IAGP MGI PMID:15207274 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845 		JBrowse link
G Gfi1 growth factor independent 1 transcription repressor IAGP MGI PMID:12441305 NCBI chr 5:107,864,521...107,873,671
Ensembl chr 5:107,864,523...107,873,902 		JBrowse link
G Gjb2 gap junction protein, beta 2 IAGP MGI PMID:12121617 PMID:24333301 NCBI chr14:57,336,059...57,342,159
Ensembl chr14:57,336,057...57,342,159 		JBrowse link
G Gjb6 gap junction protein, beta 6 IAGP MGI PMID:17227867 NCBI chr14:57,360,758...57,371,068
Ensembl chr14:57,360,760...57,371,068 		JBrowse link
G Grxcr1 glutaredoxin, cysteine rich 1 IAGP MGI PMID:13336002 NCBI chr 5:68,189,122...68,323,741
Ensembl chr 5:68,189,178...68,323,741 		JBrowse link
G Hgf hepatocyte growth factor IAGP MGI PMID:32152201 NCBI chr 5:16,758,493...16,827,448
Ensembl chr 5:16,758,493...16,825,150 		JBrowse link
G Idua iduronidase, alpha-L IAGP MGI PMID:17101178 NCBI chr 5:108,808,197...108,833,312
Ensembl chr 5:108,808,197...108,832,423 		JBrowse link
G Ildr1 immunoglobulin-like domain containing receptor 1 IAGP MGI PMID:25819842 NCBI chr16:36,514,340...36,547,166
Ensembl chr16:36,514,340...36,547,166 		JBrowse link
G Kcne1 potassium voltage-gated channel, Isk-related subfamily, member 1 IAGP MGI PMID:8982171 NCBI chr16:92,142,889...92,156,356
Ensembl chr16:92,142,870...92,156,356 		JBrowse link
G Kcnj10 potassium inwardly-rectifying channel, subfamily J, member 10 IAGP MGI PMID:12618319 NCBI chr 1:172,168,777...172,201,652
Ensembl chr 1:172,168,777...172,201,652 		JBrowse link
G Kcnq1 potassium voltage-gated channel, subfamily Q, member 1 IAGP MGI PMID:11120752 PMID:15891643 NCBI chr 7:142,660,614...142,980,787
Ensembl chr 7:142,660,099...142,980,779 		JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase IAGP MGI PMID:15731517 NCBI chr 5:75,735,647...75,817,382
Ensembl chr 5:75,735,576...75,817,382 		JBrowse link
G Lhfpl5 lipoma HMGIC fusion partner-like 5 IAGP MGI PMID:15905332 NCBI chr17:28,794,330...28,802,567
Ensembl chr17:28,794,615...28,804,653 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 IAGP MGI PMID:26542706 NCBI chr13:111,882,962...111,954,803
Ensembl chr13:111,882,962...111,945,527 		JBrowse link
G Mpv17 MpV17 mitochondrial inner membrane protein IEA MGI NCBI chr 5:31,298,007...31,311,595
Ensembl chr 5:31,297,998...31,311,595 		JBrowse link
G Myo15a myosin XVA IEA MGI NCBI chr11:60,360,165...60,419,195
Ensembl chr11:60,360,165...60,419,195 		JBrowse link
G Myo6 myosin VI IAGP MGI PMID:5980120 PMID:7493015 PMID:20224170 PMID:23485424 NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011 		JBrowse link
G Naglu alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB) IAGP MGI PMID:17712420 NCBI chr11:100,960,859...100,968,498
Ensembl chr11:100,960,838...100,968,498 		JBrowse link
G Ngfr nerve growth factor receptor (TNFR superfamily, member 16) IAGP MGI PMID:16564506 NCBI chr11:95,459,644...95,478,524
Ensembl chr11:95,459,644...95,478,561 		JBrowse link
G Pcdh15 protocadherin 15 IAGP MGI PMID:10430593 PMID:15811708 PMID:16887306 NCBI chr10:72,932,003...74,485,663
Ensembl chr10:72,935,174...74,485,569 		JBrowse link
G Phex phosphate regulating endopeptidase homolog, X-linked IAGP MGI PMID:15029877 NCBI chr  X:155,945,071...156,198,282
Ensembl chr  X:155,945,071...156,198,308 		JBrowse link
G Pou4f3 POU domain, class 4, transcription factor 3 IAGP MGI PMID:10452377 NCBI chr18:42,527,662...42,529,158
Ensembl chr18:42,527,604...42,530,314 		JBrowse link
G Ptprq protein tyrosine phosphatase receptor type Q IAGP MGI PMID:14534255 NCBI chr10:107,350,224...107,555,939
Ensembl chr10:107,352,910...107,555,912 		JBrowse link
G Rdx radixin IAGP MGI PMID:15314067 NCBI chr 9:51,958,450...52,000,038
Ensembl chr 9:51,958,473...52,011,763 		JBrowse link
G S1pr2 sphingosine-1-phosphate receptor 2 IAGP MGI PMID:16945494 PMID:17284444 PMID:17287522 NCBI chr 9:20,877,248...20,888,089
Ensembl chr 9:20,873,657...20,888,077 		JBrowse link
G S1pr3 sphingosine-1-phosphate receptor 3 IAGP MGI PMID:17287522 NCBI chr13:51,562,654...51,576,833
Ensembl chr13:51,562,675...51,576,833 		JBrowse link
G Slc12a6 solute carrier family 12, member 6 IAGP MGI PMID:14532115 NCBI chr 2:112,096,659...112,193,508
Ensembl chr 2:112,096,170...112,193,508 		JBrowse link
G Slc12a7 solute carrier family 12, member 7 IAGP MGI PMID:11976689 NCBI chr13:73,881,172...73,964,873
Ensembl chr13:73,881,213...73,964,873 		JBrowse link
G Slc26a4 solute carrier family 26, member 4 IAGP MGI PMID:14690057 PMID:15320950 NCBI chr12:31,569,813...31,610,054
Ensembl chr12:31,569,826...31,609,968 		JBrowse link
G Slc26a5 solute carrier family 26, member 5 IAGP MGI PMID:15207913 NCBI chr 5:22,013,999...22,070,602
Ensembl chr 5:22,015,653...22,070,602 		JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 IAGP MGI PMID:16181686 NCBI chr14:7,669,819...7,766,808
Ensembl chr14:7,669,823...7,767,484 		JBrowse link
G Sod1 superoxide dismutase 1, soluble IAGP MGI PMID:10464373 NCBI chr16:90,017,650...90,023,221
Ensembl chr16:90,017,642...90,023,217 		JBrowse link
G Synj2 synaptojanin 2 IAGP MGI PMID:21423608 NCBI chr17:5,991,555...6,106,041
Ensembl chr17:5,991,555...6,094,565 		JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:31550482 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421 		JBrowse link
G Thrb thyroid hormone receptor beta IAGP MGI PMID:12382103 NCBI chr14:4,429,599...4,810,538
Ensembl chr14:4,431,611...4,809,435 		JBrowse link
G Tmc1 transmembrane channel-like gene family 1 IAGP MGI PMID:22330676 NCBI chr19:20,760,820...20,931,566
Ensembl chr19:20,760,822...20,931,566 		JBrowse link
G Tmprss3 transmembrane protease, serine 3 IAGP MGI PMID:21454591 NCBI chr17:31,398,237...31,419,478
Ensembl chr17:31,398,239...31,417,951 		JBrowse link
G Tmtc4 transmembrane and tetratricopeptide repeat containing 4 IAGP MGI PMID:30188326 NCBI chr14:123,156,383...123,220,697
Ensembl chr14:123,156,383...123,221,447 		JBrowse link
G Tomt transmembrane O-methyltransferase IAGP MGI PMID:18794526 NCBI chr 7:101,549,010...101,555,572
Ensembl chr 7:101,547,577...101,555,566 		JBrowse link
G Tub tubby bipartite transcription factor IAGP MGI PMID:7612867 NCBI chr 7:108,610,087...108,633,666
Ensembl chr 7:108,549,545...108,633,667 		JBrowse link
G Ush1c USH1 protein network component harmonin IAGP MGI PMID:19447093 NCBI chr 7:45,844,774...45,887,984
Ensembl chr 7:45,844,774...45,887,927 		JBrowse link
G Usp53 ubiquitin specific peptidase 53 IAGP MGI PMID:26609154 NCBI chr 3:122,725,142...122,778,184
Ensembl chr 3:122,725,142...122,778,159 		JBrowse link
spiral ligament degeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hgf hepatocyte growth factor IAGP MGI PMID:32152201 NCBI chr 5:16,758,493...16,827,448
Ensembl chr 5:16,758,493...16,825,150 		JBrowse link
G Idua iduronidase, alpha-L IAGP MGI PMID:17101178 NCBI chr 5:108,808,197...108,833,312
Ensembl chr 5:108,808,197...108,832,423 		JBrowse link
G Mpv17 MpV17 mitochondrial inner membrane protein IEA MGI NCBI chr 5:31,298,007...31,311,595
Ensembl chr 5:31,297,998...31,311,595 		JBrowse link
G Thrb thyroid hormone receptor beta IAGP MGI PMID:12925699 NCBI chr14:4,429,599...4,810,538
Ensembl chr14:4,431,611...4,809,435 		JBrowse link
stria vascularis degeneration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsnd barttin CLCNK type accessory beta subunit IAGP MGI PMID:18833191 NCBI chr 4:106,340,653...106,349,440
Ensembl chr 4:106,340,653...106,349,480 		JBrowse link
G Cdh23 cadherin related 23 (otocadherin) IEA MGI NCBI chr10:60,138,527...60,532,291
Ensembl chr10:60,138,527...60,532,269 		JBrowse link
G Fzd4 frizzled class receptor 4 IAGP MGI PMID:15035989 NCBI chr 7:89,053,574...89,062,341
Ensembl chr 7:89,053,563...89,062,342 		JBrowse link
G Grxcr1 glutaredoxin, cysteine rich 1 IAGP MGI PMID:13336002 NCBI chr 5:68,189,122...68,323,741
Ensembl chr 5:68,189,178...68,323,741 		JBrowse link
G Lama2 laminin, alpha 2 IAGP MGI PMID:12126936 NCBI chr10:26,857,281...27,493,021
Ensembl chr10:26,856,032...27,495,754 		JBrowse link
G Mpv17 MpV17 mitochondrial inner membrane protein IEA MGI NCBI chr 5:31,298,007...31,311,595
Ensembl chr 5:31,297,998...31,311,595 		JBrowse link
G Myo6 myosin VI IAGP MGI PMID:5980120 NCBI chr 9:80,072,262...80,219,011
Ensembl chr 9:80,072,313...80,219,011 		JBrowse link
G Myo7a myosin VIIA IAGP MGI PMID:14198707 NCBI chr 7:97,700,261...97,768,730
Ensembl chr 7:97,700,267...97,768,731 		JBrowse link
G Ndp Norrie disease (pseudoglioma) (human) IAGP MGI PMID:12040033 NCBI chr  X:16,751,760...16,778,013
Ensembl chr  X:16,751,760...16,778,013 		JBrowse link
G Polg polymerase (DNA directed), gamma IAGP MGI PMID:16870370 NCBI chr 7:79,095,979...79,117,659
Ensembl chr 7:79,095,979...79,116,110 		JBrowse link
G Pou4f3 POU domain, class 4, transcription factor 3 IAGP MGI PMID:10452377 NCBI chr18:42,527,662...42,529,158
Ensembl chr18:42,527,604...42,530,314 		JBrowse link
G S1pr2 sphingosine-1-phosphate receptor 2 IAGP MGI PMID:27383011 NCBI chr 9:20,877,248...20,888,089
Ensembl chr 9:20,873,657...20,888,077 		JBrowse link
G Scarb2 scavenger receptor class B, member 2 IAGP MGI PMID:12620969 PMID:16901941 NCBI chr 5:92,589,170...92,653,516
Ensembl chr 5:92,589,173...92,654,692 		JBrowse link
G Slc26a4 solute carrier family 26, member 4 IAGP MGI PMID:14690057 PMID:15320950 PMID:21811566 PMID:23755160 NCBI chr12:31,569,813...31,610,054
Ensembl chr12:31,569,826...31,609,968 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16534
    hearing/vestibular/ear phenotype 992
      abnormal ear morphology 558
        abnormal inner ear morphology 347
          abnormal cochlea morphology 280
            cochlear degeneration 64
              organ of Corti degeneration 55
              spiral ligament degeneration 4
              stria vascularis degeneration 14
paths to the root