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Pathways

MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:abnormal tympanic ring morphology
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Accession:MP:0000030 term browser browse the term
Definition:any structural anomaly of the bony ring at the ear canal to which the tympanic membrane is attached
Synonyms:exact_synonym: tympanic ring dysplasia
 related_synonym: abnormal ectotympanic



show annotations for term's descendants           Sort by:
abnormal tympanic ring morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 IAGP MGI PMID:22219353 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805
JBrowse link
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:22219353 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126
JBrowse link
G Bmp7 bone morphogenetic protein 7 IAGP MGI PMID:22219353 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114
JBrowse link
G Bmper BMP-binding endothelial regulator IAGP MGI PMID:18789316 NCBI chr 9:23,134,372...23,396,511
Ensembl chr 9:23,134,372...23,396,496
JBrowse link
G Chrd chordin IAGP MGI PMID:12810603 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134
JBrowse link
G Ctnnb1 catenin beta 1 IAGP MGI PMID:21087601 NCBI chr 9:120,762,466...120,789,573
Ensembl chr 9:120,758,282...120,789,573
JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:25725491 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812
JBrowse link
G Efnb1 ephrin B1 IAGP MGI PMID:15037550 PMID:19515977 NCBI chr  X:98,179,667...98,192,628
Ensembl chr  X:98,179,736...98,192,597
JBrowse link
G Fbln1 fibulin 1 IAGP MGI PMID:18538758 NCBI chr15:85,090,150...85,170,495
Ensembl chr15:85,090,150...85,170,736
JBrowse link
G Fgf9 fibroblast growth factor 9 IAGP MGI PMID:12140681 NCBI chr14:58,308,131...58,350,311
Ensembl chr14:58,308,004...58,350,177
JBrowse link
G Gas1 growth arrest specific 1 IAGP MGI PMID:17504941 PMID:17525797 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179
JBrowse link
G Gata3 GATA binding protein 3 IAGP MGI PMID:34383890 NCBI chr 2:9,861,889...9,894,845
Ensembl chr 2:9,861,889...9,894,845
JBrowse link
G Gna11 guanine nucleotide binding protein, alpha 11 IAGP MGI PMID:9687499 NCBI chr10:81,364,558...81,380,996
Ensembl chr10:81,364,558...81,381,024
JBrowse link
G Gnaq guanine nucleotide binding protein, alpha q polypeptide IAGP MGI PMID:9687499 NCBI chr19:16,110,048...16,365,884
Ensembl chr19:16,110,195...16,364,827
JBrowse link
G Gnas GNAS complex locus IAGP MGI PMID:26859889 NCBI chr 2:174,126,113...174,188,537
Ensembl chr 2:174,126,113...174,188,537
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15037550 PMID:16221728 PMID:22219353 PMID:26859889 PMID:27362800 More... NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hoxa1 homeobox A1 IAGP MGI PMID:1680563 PMID:15367676 NCBI chr 6:52,132,573...52,135,299
Ensembl chr 6:52,132,570...52,135,297
JBrowse link
G Hoxa2 homeobox A2 IAGP MGI PMID:7903600 PMID:8565828 PMID:11578867 PMID:16221728 NCBI chr 6:52,139,389...52,141,808
Ensembl chr 6:52,139,397...52,141,811
JBrowse link
G Med23 mediator complex subunit 23 IAGP MGI PMID:33155500 NCBI chr10:24,745,889...24,789,358
Ensembl chr10:24,745,884...24,789,579
JBrowse link
G Nabp2 nucleic acid binding protein 2 IAGP MGI PMID:22940690 PMID:23408915 NCBI chr10:128,237,263...128,247,426
Ensembl chr10:128,237,264...128,247,361
JBrowse link
G Nkx3-2 NK3 homeobox 2 IAGP MGI PMID:14973294 NCBI chr 5:41,918,826...41,921,563
Ensembl chr 5:41,918,826...41,921,844
JBrowse link
G Osr2 odd-skipped related 2 IAGP MGI PMID:15175245 PMID:19389375 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:17610273 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
G Phc1 polyhomeotic 1 IAGP MGI PMID:16024804 NCBI chr 6:122,294,690...122,317,551
Ensembl chr 6:122,294,690...122,317,520
JBrowse link
G Phc2 polyhomeotic 2 IAGP MGI PMID:16024804 NCBI chr 4:128,548,448...128,646,674
Ensembl chr 4:128,548,495...128,646,674
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:11242110 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 IAGP MGI PMID:10888597 NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043
JBrowse link
G Tfrc transferrin receptor IAGP MGI PMID:27362800 NCBI chr16:32,427,714...32,451,612
Ensembl chr16:32,427,738...32,451,612
JBrowse link
G Tshz1 teashirt zinc finger family member 1 IAGP MGI PMID:17586487 NCBI chr18:84,029,752...84,105,833
Ensembl chr18:84,029,752...84,105,831
JBrowse link
G Wdr19 WD repeat domain 19 IAGP MGI PMID:22228095 NCBI chr 5:65,357,039...65,417,758
Ensembl chr 5:65,357,039...65,417,758
JBrowse link
absent tympanic ring term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 IAGP MGI PMID:22219353 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805
JBrowse link
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:22219353 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126
JBrowse link
G Bmp7 bone morphogenetic protein 7 IAGP MGI PMID:22219353 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114
JBrowse link
G Dlx1 distal-less homeobox 1 IAGP MGI PMID:18697905 NCBI chr 2:71,358,457...71,364,325
Ensembl chr 2:71,358,457...71,364,325
JBrowse link
G Dlx2 distal-less homeobox 2 IAGP MGI PMID:18697905 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098
JBrowse link
G Dlx6 distal-less homeobox 6 IAGP MGI PMID:18697905 NCBI chr 6:6,863,334...6,867,970
Ensembl chr 6:6,863,334...6,868,568
JBrowse link
G E2f1 E2F transcription factor 1 IAGP MGI PMID:35593225 NCBI chr 2:154,401,320...154,411,812
Ensembl chr 2:154,401,327...154,411,812
JBrowse link
G Ece1 endothelin converting enzyme 1 IAGP MGI PMID:9449665 NCBI chr 4:137,589,548...137,692,540
Ensembl chr 4:137,589,548...137,692,540
JBrowse link
G Ednra endothelin receptor type A IAGP MGI PMID:9449664 PMID:15306564 PMID:18199583 NCBI chr 8:78,389,658...78,451,081
Ensembl chr 8:78,389,660...78,451,093
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:12514106 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734
JBrowse link
G Foxg1 forkhead box G1 IAGP MGI PMID:16452092 PMID:16600992 NCBI chr12:49,429,666...49,433,650
Ensembl chr12:49,429,443...49,433,644
JBrowse link
G Foxi3 forkhead box I3 IAGP MGI PMID:24650709 PMID:37041148 NCBI chr 6:70,933,590...70,938,050
Ensembl chr 6:70,933,515...70,938,050
JBrowse link
G Gas1 growth arrest specific 1 IAGP MGI PMID:17525797 NCBI chr13:60,322,219...60,325,179
Ensembl chr13:60,322,219...60,325,179
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 IAGP MGI PMID:9006072 NCBI chr 1:118,761,791...118,987,578
Ensembl chr 1:118,761,862...118,981,349
JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:7555718 PMID:7555726 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:15107405 PMID:17420000 PMID:22219353 PMID:34184034 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Ift140 intraflagellar transport 140 IAGP MGI PMID:24009529 NCBI chr17:25,235,056...25,318,461
Ensembl chr17:25,235,059...25,318,469
JBrowse link
G Mef2c myocyte enhancer factor 2C IAGP MGI PMID:17420000 NCBI chr13:83,652,136...83,815,197
Ensembl chr13:83,652,153...83,815,199
JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:12701100 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
JBrowse link
G Msx2 msh homeobox 2 IAGP MGI PMID:12701100 NCBI chr13:53,620,917...53,626,816
Ensembl chr13:53,620,920...53,627,110
JBrowse link
G Prrx1 paired related homeobox 1 IAGP MGI PMID:7758948 NCBI chr 1:163,072,688...163,142,714
Ensembl chr 1:163,072,688...163,141,279
JBrowse link
G Shh sonic hedgehog IAGP MGI PMID:17525797 NCBI chr 5:28,661,838...28,672,099
Ensembl chr 5:28,661,813...28,672,254
JBrowse link
G Six1 sine oculis-related homeobox 1 IAGP MGI PMID:15788460 NCBI chr12:73,088,601...73,093,486
Ensembl chr12:73,086,789...73,100,661
JBrowse link
G Six4 sine oculis-related homeobox 4 IAGP MGI PMID:15788460 NCBI chr12:73,146,383...73,160,201
Ensembl chr12:73,146,383...73,160,230
JBrowse link
G Smo smoothened, frizzled class receptor IAGP MGI PMID:15107405 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364
JBrowse link
G Snrpb small nuclear ribonucleoprotein B IAGP MGI PMID:35593225 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323
JBrowse link
G Srsf3 serine and arginine-rich splicing factor 3 IAGP MGI PMID:34184034 NCBI chr17:29,251,634...29,262,346
Ensembl chr17:29,251,602...29,262,347
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:16452092 PMID:16600992 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421
JBrowse link
G Tfap2a transcription factor AP-2, alpha IAGP MGI PMID:8622766 NCBI chr13:40,867,278...40,891,715
Ensembl chr13:40,868,778...40,891,852
JBrowse link
decreased tympanic ring size term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcor BCL6 interacting corepressor IAGP MGI PMID:32692983 NCBI chr  X:11,902,976...12,026,769
Ensembl chr  X:11,902,979...12,026,594
JBrowse link
G Bmp2 bone morphogenetic protein 2 IAGP MGI PMID:22219353 NCBI chr 2:133,394,079...133,404,816
Ensembl chr 2:133,394,079...133,404,805
JBrowse link
G Bmp4 bone morphogenetic protein 4 IAGP MGI PMID:22219353 NCBI chr14:46,620,982...46,628,126
Ensembl chr14:46,620,977...46,628,126
JBrowse link
G Bmp7 bone morphogenetic protein 7 IAGP MGI PMID:22219353 NCBI chr 2:172,709,805...172,782,114
Ensembl chr 2:172,709,805...172,782,114
JBrowse link
G Chrd chordin IAGP MGI PMID:12810603 NCBI chr16:20,551,528...20,561,132
Ensembl chr16:20,551,877...20,561,134
JBrowse link
G Dicer1 dicer 1, ribonuclease type III IAGP MGI PMID:23716939 NCBI chr12:104,654,001...104,718,331
Ensembl chr12:104,654,001...104,718,211
JBrowse link
G Dlx1 distal-less homeobox 1 IAGP MGI PMID:18697905 NCBI chr 2:71,358,457...71,364,325
Ensembl chr 2:71,358,457...71,364,325
JBrowse link
G Dlx2 distal-less homeobox 2 IAGP MGI PMID:18697905 NCBI chr 2:71,373,752...71,377,095
Ensembl chr 2:71,373,752...71,377,098
JBrowse link
G Dlx5 distal-less homeobox 5 IAGP MGI PMID:10433909 PMID:10433912 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085
JBrowse link
G Dlx6 distal-less homeobox 6 IAGP MGI PMID:18697905 NCBI chr 6:6,863,334...6,867,970
Ensembl chr 6:6,863,334...6,868,568
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 IAGP MGI PMID:10471511 NCBI chr 1:14,239,177...14,381,259
Ensembl chr 1:14,239,178...14,380,459
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:12514106 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734
JBrowse link
G Foxc2 forkhead box C2 IAGP MGI PMID:9106663 NCBI chr 8:121,842,910...121,845,634
Ensembl chr 8:121,842,910...121,845,634
JBrowse link
G Gja1 gap junction protein, alpha 1 IAGP MGI PMID:11076975 NCBI chr10:56,253,297...56,266,519
Ensembl chr10:56,253,426...56,278,609
JBrowse link
G Gsc goosecoid homeobox IAGP MGI PMID:10512191 NCBI chr12:104,437,468...104,439,495
Ensembl chr12:104,437,468...104,439,589
JBrowse link
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano IAGP MGI PMID:18483623 NCBI chr 6:113,044,389...113,054,205
Ensembl chr 6:113,043,843...113,054,294
JBrowse link
G H2az2 H2A.Z histone variant 2 IAGP MGI PMID:12514106 PMID:22219353 NCBI chr11:6,377,226...6,394,511
Ensembl chr11:6,377,229...6,394,443
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IAGP MGI PMID:19211672 NCBI chr 8:57,774,018...57,777,552
Ensembl chr 8:57,774,018...57,777,668
JBrowse link
G Msx1 msh homeobox 1 IAGP MGI PMID:10512191 NCBI chr 5:37,977,835...37,981,929
Ensembl chr 5:37,977,829...37,981,927
JBrowse link
G Osr2 odd-skipped related 2 IAGP MGI PMID:19389375 NCBI chr15:35,296,244...35,303,451
Ensembl chr15:35,296,244...35,303,451
JBrowse link
G Pax3 paired box 3 IAGP MGI PMID:18483623 PMID:32692983 NCBI chr 1:78,077,904...78,173,773
Ensembl chr 1:78,077,904...78,173,771
JBrowse link
G Pax9 paired box 9 IAGP MGI PMID:9732271 PMID:21420399 NCBI chr12:56,738,478...56,759,609
Ensembl chr12:56,738,552...56,759,607
JBrowse link
G Pitx1 paired-like homeodomain transcription factor 1 IAGP MGI PMID:10101115 NCBI chr13:55,972,857...55,984,002
Ensembl chr13:55,972,864...55,984,005
JBrowse link
G Rspo2 R-spondin 2 IAGP MGI PMID:21237142 NCBI chr15:42,884,184...43,034,990
Ensembl chr15:42,884,190...43,034,222
JBrowse link
G Tbx1 T-box 1 IAGP MGI PMID:15469978 PMID:15652707 NCBI chr16:18,399,729...18,409,412
Ensembl chr16:18,399,729...18,409,421
JBrowse link
tympanic ring hypoplasia term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 IAGP MGI PMID:26341559 NCBI chr 8:26,008,808...26,067,819
Ensembl chr 8:26,003,670...26,065,734
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 IAGP MGI PMID:10888597 NCBI chr18:60,946,827...60,982,055
Ensembl chr18:60,946,827...60,982,043
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 16475
    hearing/vestibular/ear phenotype 992
      abnormal ear morphology 558
        abnormal middle ear morphology 130
          abnormal tympanic ring morphology 63
            absent tympanic ring 29
            decreased tympanic ring size + 26
paths to the root