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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of stem cell population maintenance
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Accession:GO:2000036 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of stem cell population maintenance.
Synonyms:related_synonym: regulation of maintenance of pluripotency
 never_in_taxon: NCBITaxon:4751 ! Fungi



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regulation of stem cell population maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (PMID:22367759) RGD PMID:22367759 NCBI chr19:9,261,290...9,352,636
Ensembl chr19:9,255,194...9,346,574
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 involved_in ISO
IBA
(PMID:22367759)
GO_REF:0000033
RGD
GO_Central
PMID:22367759 GO_REF:0000033 NCBI chr 7:54,016,447...54,117,511
Ensembl chr 7:52,130,441...52,223,575
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 involved_in ISO
IBA
(PMID:22367759)
GO_REF:0000033
RGD
GO_Central
PMID:22367759 GO_REF:0000033 NCBI chr 1:74,471,284...74,487,527
Ensembl chr 1:65,555,924...65,572,167
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISO (PMID:24394384) RGD PMID:24394384 NCBI chr12:7,441,699...7,482,625
Ensembl chr12:2,645,061...2,684,784
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:17624332)
UniProt
RGD
PMID:17624332 GO_REF:0000024 NCBI chr 7:57,762,710...57,884,555
Ensembl chr 7:55,880,112...55,994,784
JBrowse link
G Kat2a lysine acetyltransferase 2A involved_in ISO (PMID:30270482) RGD PMID:30270482 NCBI chr10:86,132,535...86,140,877
Ensembl chr10:85,632,216...85,640,166
JBrowse link
G Kdm3a lysine demethylase 3A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1097166 (PMID:17938240)
Ensembl
RGD
PMID:17938240 GO_REF:0000107 NCBI chr 4:105,189,208...105,233,526
Ensembl chr 4:103,630,908...103,675,073
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 acts_upstream_of_or_within ISO (PMID:22977234) RGD PMID:22977234 NCBI chr 3:175,157,824...175,237,831
Ensembl chr 3:154,738,581...154,818,594
JBrowse link
G Ptn pleiotrophin involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21791434)
UniProt
Ensembl
RGD
PMID:21791434 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Sav1 salvador family WW domain containing protein 1 acts_upstream_of_or_within ISO MGI:3790763 (PMID:18369314) RGD PMID:18369314 NCBI chr 6:94,214,514...94,236,354
Ensembl chr 6:88,478,539...88,499,968
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:18347094) RGD PMID:18347094 NCBI chr 4:106,238,892...106,404,012
Ensembl chr 4:104,680,739...104,845,287
JBrowse link
G Tcl1a Tcl1 family Akt coactivator A acts_upstream_of_or_within ISO MGI:2446210 (PMID:17938240) RGD PMID:17938240 NCBI chr 6:129,889,763...129,895,756
Ensembl chr 6:124,125,032...124,131,025
JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO (PMID:31128943) RGD PMID:31128943 NCBI chr 6:29,565,610...29,604,954
Ensembl chr 6:23,845,499...23,884,846
JBrowse link
G Zc3h13 zinc finger CCCH type containing 13 involved_in ISO (PMID:29547716) RGD PMID:29547716 NCBI chr15:57,016,686...57,081,201
Ensembl chr15:50,607,380...50,671,802
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857856 (PMID:20040500)
Ensembl
RGD
PMID:20040500 GO_REF:0000107 NCBI chr10:69,233,377...69,287,360
Ensembl chr10:68,735,894...68,789,888
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax8 paired box 8 involved_in ISS
ISO
GO_REF:0000024
(PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:7,185,723...7,242,363
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654 (PMID:9056639) RGD PMID:9056639 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
negative regulation of somatic stem cell population maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir145 microRNA 145 involved_in ISO (PMID:19409607) RGD PMID:19409607 NCBI chr18:57,369,983...57,370,070
Ensembl chr18:55,099,640...55,099,727
JBrowse link
negative regulation of stem cell population maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Loxl2 lysyl oxidase-like 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:25959397)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25959397 GO_REF:0000024 GO_REF:0000107 NCBI chr15:51,091,547...51,182,843
Ensembl chr15:44,683,880...44,773,067
JBrowse link
G Wnt9b Wnt family member 9B involved_in ISO (PMID:25640183) RGD PMID:25640183 NCBI chr10:89,135,362...89,157,065
Ensembl chr10:88,635,331...88,657,035
JBrowse link
G Zfp706 zinc finger protein 706 involved_in ISO (PMID:24412312) RGD PMID:24412312 NCBI chr 7:68,167,496...68,174,121
Ensembl chr 7:68,166,323...68,174,148
JBrowse link
positive regulation of somatic stem cell population maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lbh LBH regulator of WNT signaling pathway involved_in ISO (PMID:25655704) RGD PMID:25655704 NCBI chr 6:22,569,238...22,593,056
Ensembl chr 6:22,568,834...22,593,079
JBrowse link
G Tp63 tumor protein p63 involved_in ISO (PMID:25655704) RGD PMID:25655704 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398
JBrowse link
positive regulation of stem cell population maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dsg2 desmoglein 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:12494996)
Ensembl
RGD
PMID:12494996 GO_REF:0000107 NCBI chr18:12,121,287...12,179,590
Ensembl chr18:11,846,183...11,904,156
JBrowse link
G Esrrb estrogen-related receptor beta involved_in ISS
ISO
GO_REF:0000024
(PMID:23019124), (PMID:23040477), (PMID:23040478), (PMID:26206133)
UniProt
RGD
PMID:23019124 PMID:23040477 PMID:23040478 PMID:26206133 GO_REF:0000024 NCBI chr 6:111,738,662...111,894,087
Ensembl chr 6:106,008,095...106,160,791
JBrowse link
G Kdm2b lysine demethylase 2B acts_upstream_of_or_within ISO (PMID:21540074) RGD PMID:21540074 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:23019124)
UniProt
RGD
PMID:23019124 GO_REF:0000024 NCBI chr 3:175,157,824...175,237,831
Ensembl chr 3:154,738,581...154,818,594
JBrowse link
G Prdm14 PR/SET domain 14 involved_in ISO (PMID:26523391), (PMID:27281218) RGD PMID:26523391 PMID:27281218 NCBI chr 5:10,864,137...10,876,666
Ensembl chr 5:6,082,442...6,092,712
JBrowse link
G Rest RE1-silencing transcription factor involved_in ISO
IEA
ISS
(PMID:21258371)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21258371 GO_REF:0000024 GO_REF:0000107 NCBI chr14:31,213,415...31,233,451
Ensembl chr14:30,862,553...30,894,354
JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (PMID:27912097) RGD PMID:27912097 NCBI chr 7:8,733,056...8,738,543
Ensembl chr 7:8,082,364...8,098,914
JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO MGI:106907|MGI:109241 (PMID:20516196) RGD PMID:20516196 NCBI chr 1:176,227,175...176,445,122
Ensembl chr 1:166,792,628...167,003,369
JBrowse link
G Tead3 TEA domain transcription factor 3 acts_upstream_of_or_within ISO MGI:101876|MGI:106907 (PMID:20516196) RGD PMID:20516196 NCBI chr20:6,392,053...6,411,446
Ensembl chr20:6,392,053...6,411,446
JBrowse link
G Tead4 TEA domain transcription factor 4 acts_upstream_of_or_within ISO MGI:101876|MGI:109241 (PMID:20516196) RGD PMID:20516196 NCBI chr 4:163,180,192...163,258,342
Ensembl chr 4:161,497,851...161,572,323
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:20516196)
Ensembl
RGD
PMID:20516196 GO_REF:0000107 NCBI chr 8:13,380,551...13,451,640
Ensembl chr 8:5,095,722...5,167,010
JBrowse link
G Zfp322a zinc finger protein 322a involved_in ISO (PMID:24550733) RGD PMID:24550733 NCBI chr17:41,773,789...41,789,654
Ensembl chr17:41,773,782...41,790,078
JBrowse link
regulation of somatic stem cell population maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Myc MYC proto-oncogene, bHLH transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:31005419)
UniProt
RGD
PMID:31005419 GO_REF:0000024 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:93,593,705...93,598,630
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1934268|MGI:2445832 (PMID:17199044)
Ensembl
RGD
PMID:17199044 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Taf5l1 TATA-box binding protein associated factor 5 like 1 involved_in ISO (PMID:31005419) RGD PMID:31005419 NCBI chr19:68,889,153...68,908,480
Ensembl chr19:51,991,708...52,011,295
JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like involved_in ISO (PMID:31005419) RGD PMID:31005419 NCBI chr 1:215,101,266...215,113,888
Ensembl chr 1:205,672,149...205,684,655
JBrowse link
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO MGI:1858004 (PMID:19850742) RGD PMID:19850742 NCBI chr 5:128,586,776...128,600,976
Ensembl chr 5:128,587,701...128,600,976
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO (PMID:18467660) RGD PMID:18467660 NCBI chr 4:106,238,892...106,404,012
Ensembl chr 4:104,680,739...104,845,287
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    multicellular organismal process 9002
      stem cell population maintenance 180
        regulation of stem cell population maintenance 40
          negative regulation of stem cell population maintenance + 8
          positive regulation of stem cell population maintenance + 14
          regulation of somatic stem cell population maintenance + 13
Path 2
Term Annotations click to browse term
  biological_process 20553
    biological regulation 13833
      regulation of biological process 13387
        regulation of multicellular organismal process 3345
          regulation of stem cell population maintenance 40
            negative regulation of stem cell population maintenance + 8
            positive regulation of stem cell population maintenance + 14
            regulation of somatic stem cell population maintenance + 13
paths to the root