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ONTOLOGY REPORT - ANNOTATIONS

Term:promoter-specific chromatin binding
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Accession:GO:1990841 term browser browse the term
Definition:Binding to a section of chromatin that is associated with gene promoter sequences of DNA.


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promoter-specific chromatin binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl hydrocarbon receptor IPI RGD PMID:31746392 RGD:401793746 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Atf2 activating transcription factor 2 enables ISO
IEA		 (PMID:17267404)
GO_REF:0000107
(PMID:18802055)		 RGD
Ensembl		 PMID:17267404 PMID:18802055 GO_REF:0000107 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236 		JBrowse link
G Atf4 activating transcription factor 4 enables ISO (PMID:17267404) RGD PMID:17267404 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase enables IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:182,515,335...182,520,007
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger enables ISO (PMID:24623306)
(PMID:22770845)		 RGD PMID:22770845 PMID:24623306 NCBI chr17:81,332,175...81,341,625
Ensembl chr17:81,332,214...81,388,690 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 enables ISO (PMID:26102480) RGD PMID:26102480 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Ddx5 DEAD-box helicase 5 enables ISO (PMID:24910439) RGD PMID:24910439 NCBI chr10:91,723,508...91,732,210
Ensembl chr10:91,723,508...91,732,283 		JBrowse link
G Dhx9 DExH-box helicase 9 enables ISO (PMID:28221134) RGD PMID:28221134 NCBI chr13:65,602,322...65,639,098
Ensembl chr13:65,602,323...65,639,069 		JBrowse link
G Dnmt1 DNA methyltransferase 1 enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:24623306)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:24623306 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:19,440,611...19,486,659
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G E2f4 E2F transcription factor 4 enables ISO (PMID:25100735) RGD PMID:25100735 NCBI chr19:33,174,396...33,181,806
Ensembl chr19:33,174,410...33,181,806 		JBrowse link
G Egr1 early growth response 1 enables IDA
ISO
IEA		 (PMID:20363028)
GO_REF:0000107		 RGD
Ensembl		 PMID:20363028 PMID:22292946 GO_REF:0000107, RGD:10395298 NCBI chr18:26,462,967...26,466,766
Ensembl chr18:26,462,981...26,466,766 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 enables ISO (PMID:23918802)
(PMID:22770845)		 RGD PMID:22770845 PMID:23918802 NCBI chr20:3,919,623...3,936,751
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G ENSRNOG00000062548 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 1:78,470,633...78,472,968 JBrowse link
G Ep300 E1A binding protein p300 IDA RGD PMID:21307242 RGD:7364713 NCBI chr 7:113,108,476...113,178,529
Ensembl chr 7:113,106,247...113,136,088
Ensembl chr 7:113,106,247...113,136,088 		JBrowse link
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit enables ISO (PMID:22323595) RGD PMID:22323595 NCBI chr 1:78,971,310...79,007,963
Ensembl chr 1:78,996,390...79,007,963 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit enables ISO (PMID:22323595) RGD PMID:22323595 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329 		JBrowse link
G Ercc4 ERCC excision repair 4, endonuclease catalytic subunit enables ISO (PMID:22323595) RGD PMID:22323595 NCBI chr10:2,416,259...2,448,364
Ensembl chr10:2,419,038...2,448,369
Ensembl chr10:2,419,038...2,448,369 		JBrowse link
G Esr1 estrogen receptor 1 IDA RGD PMID:24046281 RGD:7364871 NCBI chr 1:41,106,335...41,499,104
Ensembl chr 1:41,210,475...41,495,002 		JBrowse link
G Esr2 estrogen receptor 2 IDA RGD PMID:24046281 RGD:7364871 NCBI chr 6:94,858,438...94,909,630
Ensembl chr 6:94,809,547...94,908,919 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO (PMID:24623306) RGD PMID:24623306 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit IDA mRNA:decreased expression:hippocampus RGD PMID:29330744 RGD:405650592 NCBI chr 6:105,121,170...105,124,036
Ensembl chr 6:105,121,170...105,124,036 		JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit enables ISO (PMID:30990796) RGD PMID:30990796 NCBI chr 1:202,754,549...202,763,057
Ensembl chr 1:202,754,529...202,764,930 		JBrowse link
G Foxc1 forkhead box C1 enables ISO (PMID:25808752) RGD PMID:25808752 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 enables ISS
ISO		 GO_REF:0000024
(PMID:18187037)		 UniProt
RGD		 PMID:18187037 GO_REF:0000024 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxo1 forkhead box O1 enables ISO (PMID:22514318) RGD PMID:22514318 NCBI chr 2:136,312,168...136,390,603
Ensembl chr 2:136,312,168...136,387,790 		JBrowse link
G Foxo4 forkhead box O4 IDA RGD PMID:16054032 RGD:10402362 NCBI chr  X:66,385,241...66,392,115
Ensembl chr  X:66,385,558...66,392,115 		JBrowse link
G Gadd45a growth arrest and DNA-damage-inducible, alpha enables IEA
ISO		 GO_REF:0000107
(PMID:22323595)		 Ensembl
RGD		 PMID:22323595 GO_REF:0000107 NCBI chr 4:96,154,789...96,157,091
Ensembl chr 4:96,154,789...96,157,115 		JBrowse link
G Gli2 GLI family zinc finger 2 enables ISO (PMID:26565916)
(PMID:25808752)		 RGD PMID:25808752 PMID:26565916 NCBI chr13:29,946,882...30,163,589
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gtf2b general transcription factor IIB enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:12931194), (PMID:24441171)
(PMID:22323595)		 UniProt
Ensembl
RGD		 PMID:12931194 PMID:22323595 PMID:24441171 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:231,767,317...231,785,626
Ensembl chr 2:231,767,238...231,785,651 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 enables ISO
ISS		 (PMID:24441171)
GO_REF:0000024		 RGD
UniProt		 PMID:24441171 GO_REF:0000024 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423 		JBrowse link
G Hdac1 histone deacetylase 1 enables ISO (PMID:22770845) RGD PMID:22770845 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 IDA RGD PMID:21586557 RGD:7241147 NCBI chr20:40,548,244...40,571,609
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Hdac4 histone deacetylase 4 IDA RGD PMID:21586557 RGD:7241147 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164 		JBrowse link
G Hnf1b HNF1 homeobox B enables ISO
IEA		 (PMID:26292219)
GO_REF:0000107		 RGD
Ensembl		 PMID:26292219 GO_REF:0000107 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables IDA
ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:21235343)		 UniProt
GO_Central
RGD		 PMID:21235343 PMID:19632204 GO_REF:0000024 GO_REF:0000033, RGD:10059314 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Hsf1 heat shock transcription factor 1 IDA RGD PMID:26053851 RGD:10402396 NCBI chr 7:108,196,040...108,223,011
Ensembl chr 7:108,196,056...108,223,011 		JBrowse link
G Ikzf3 IKAROS family zinc finger 3 enables ISO (PMID:17646674) RGD PMID:17646674 NCBI chr10:83,460,564...83,553,591
Ensembl chr10:83,465,745...83,553,591 		JBrowse link
G Irf3 interferon regulatory factor 3 enables ISO (PMID:18802055) RGD PMID:18802055 NCBI chr 1:95,479,966...95,484,926
Ensembl chr 1:95,479,821...95,484,935 		JBrowse link
G Isl1 ISL LIM homeobox 1 enables ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:24643061)		 UniProt
Ensembl
RGD		 PMID:24643061 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:48,079,412...48,090,704
Ensembl chr 2:48,080,522...48,095,584 		JBrowse link
G Kat8 lysine acetyltransferase 8 enables IEA
ISO		 GO_REF:0000107
(PMID:23523075)		 Ensembl
RGD		 PMID:23523075 GO_REF:0000107 NCBI chr 1:182,524,355...182,536,638
Ensembl chr 1:182,515,327...182,536,633 		JBrowse link
G Kdm1a lysine demethylase 1A enables ISO (PMID:19497860) RGD PMID:19497860 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G Klf4 KLF transcription factor 4 enables ISO (PMID:27907090) RGD PMID:27907090 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 enables ISO (PMID:22770845) RGD PMID:22770845 NCBI chr 7:113,186,303...113,209,706
Ensembl chr 7:113,186,370...113,207,489 		JBrowse link
G LOC134479587 polycomb group RING finger protein 2-like enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr 7:355,251...356,246 JBrowse link
G Macroh2a1 macroH2A.1 histone enables ISO (PMID:18936163) RGD PMID:18936163 NCBI chr17:8,479,331...8,542,071
Ensembl chr17:8,479,372...8,542,072 		JBrowse link
G Mecp2 methyl CpG binding protein 2 enables IDA
ISO		 (PMID:16782889) RGD PMID:16782889 PMID:21425435 RGD:8552971 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
G Med1 mediator complex subunit 1 enables ISO (PMID:22323595), (PMID:29519872) RGD PMID:22323595 PMID:29519872 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mybl1 MYB proto-oncogene like 1 enables ISO (PMID:26624618) RGD PMID:26624618 NCBI chr 5:9,582,905...9,618,179
Ensembl chr 5:9,582,934...9,618,183 		JBrowse link
G Myod1 myogenic differentiation 1 enables ISS
ISO		 GO_REF:0000024
(PMID:25217815)		 UniProt
RGD		 PMID:25217815 GO_REF:0000024 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554 		JBrowse link
G Ndn necdin, MAGE family member enables ISO (PMID:22514318) RGD PMID:22514318 NCBI chr 1:115,849,168...115,850,767
Ensembl chr 1:115,849,105...115,850,767 		JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 enables ISO (PMID:25637874) RGD PMID:25637874 NCBI chr10:81,796,055...81,812,926
Ensembl chr10:81,800,366...81,832,318 		JBrowse link
G Nipbl NIPBL, cohesin loading factor enables ISO (PMID:28041881) RGD PMID:28041881 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 enables ISO
IEA		 (PMID:32226647)
GO_REF:0000107		 RGD
Ensembl		 PMID:32226647 GO_REF:0000107 NCBI chr18:31,271,681...31,393,320
Ensembl chr18:31,271,681...31,393,375 		JBrowse link
G Nrl neural retina leucine zipper enables ISO (PMID:15163632) RGD PMID:15163632 NCBI chr15:29,007,059...29,011,480
Ensembl chr15:29,008,104...29,009,832 		JBrowse link
G Nup98 nucleoporin 98 and 96 precursor enables ISS
ISO		 GO_REF:0000024
(PMID:28221134)		 UniProt
RGD		 PMID:28221134 GO_REF:0000024 NCBI chr 1:156,494,423...156,591,415
Ensembl chr 1:156,494,423...156,591,415 		JBrowse link
G Pcgf1 polycomb group ring finger 1 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:115,576,165...115,587,019
Ensembl chr 4:115,583,867...115,587,008 		JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 IDA RGD PMID:19380737 RGD:2311163 NCBI chr12:7,757,865...7,763,064
Ensembl chr12:7,757,865...7,763,064 		JBrowse link
G Polr2a RNA polymerase II subunit A enables ISO (PMID:24441171) RGD PMID:24441171 NCBI chr10:54,452,438...54,478,486
Ensembl chr10:54,452,441...54,478,455 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 enables ISS
ISO		 GO_REF:0000024
(PMID:17145718)
(PMID:24643061)		 UniProt
RGD		 PMID:17145718 PMID:24643061 GO_REF:0000024 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma enables ISO (PMID:29519872) RGD PMID:29519872 NCBI chr 4:148,423,102...148,548,471
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha IDA RGD PMID:19948729 RGD:10059643 NCBI chr14:58,860,752...59,516,525
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
G Prdm1 PR/SET domain 1 enables ISO (PMID:27102484) RGD PMID:27102484 NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488 		JBrowse link
G Prdm15 PR/SET domain 15 enables ISO (PMID:28740264) RGD PMID:28740264 NCBI chr11:37,164,608...37,225,172
Ensembl chr11:37,165,575...37,222,207 		JBrowse link
G Rbl1 RB transcriptional corepressor like 1 enables ISO
IEA		 (PMID:25100735)
GO_REF:0000107		 RGD
Ensembl		 PMID:25100735 GO_REF:0000107 NCBI chr 3:145,806,160...145,869,434
Ensembl chr 3:145,807,095...145,869,330 		JBrowse link
G Rbl2 RB transcriptional corepressor like 2 enables ISO
IEA		 (PMID:25100735)
GO_REF:0000107		 RGD
Ensembl		 PMID:25100735 GO_REF:0000107 NCBI chr19:15,876,852...15,923,632
Ensembl chr19:15,876,853...15,923,572 		JBrowse link
G Runx1 RUNX family transcription factor 1 IDA RGD PMID:19342459 RGD:11251715 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 enables ISO (PMID:24623306)
(PMID:20164836)		 RGD PMID:20164836 PMID:24623306 NCBI chr 2:182,898,738...182,930,283
Ensembl chr 2:182,898,738...182,930,506 		JBrowse link
G Sirt1 sirtuin 1 enables IEA
ISO		 GO_REF:0000107
(PMID:22514318)		 Ensembl
RGD		 PMID:22514318 GO_REF:0000107 NCBI chr20:25,307,225...25,329,273
Ensembl chr20:25,306,917...25,329,260 		JBrowse link
G Smad3 SMAD family member 3 enables ISO (PMID:18802055) RGD PMID:18802055 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Sox10 SRY-box transcription factor 10 IMP RGD PMID:22037207 RGD:12859028 NCBI chr 7:110,725,274...110,734,651
Ensembl chr 7:110,725,274...110,735,544 		JBrowse link
G Stat1 signal transducer and activator of transcription 1 enables ISO (PMID:26479788) RGD PMID:26479788 NCBI chr 9:49,419,561...49,459,969
Ensembl chr 9:49,419,340...49,588,540 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables ISO (PMID:22770845) RGD PMID:22770845 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 enables ISO (PMID:22323595) RGD PMID:22323595 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Taf10 TATA-box binding protein associated factor 10 enables ISO (PMID:22323595) RGD PMID:22323595 NCBI chr 1:160,095,108...160,096,401
Ensembl chr 1:160,095,108...160,096,376 		JBrowse link
G Taf5 TATA-box binding protein associated factor 5 enables ISO (PMID:22323595) RGD PMID:22323595 NCBI chr 1:245,958,428...245,973,914
Ensembl chr 1:245,958,428...245,973,914 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 IDA RGD PMID:21901280 RGD:152995490 NCBI chr 1:254,785,956...254,978,967
Ensembl chr 1:254,786,091...254,978,967 		JBrowse link
G Tp53 tumor protein p53 enables ISS
ISO
IEA		 GO_REF:0000024
(PMID:20725088), (PMID:24356969)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20725088 PMID:24356969 GO_REF:0000024 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
G Tp63 tumor protein p63 enables ISO (PMID:37115925) RGD PMID:37115925 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Trim28 tripartite motif-containing 28 enables ISO
ISS		 (PMID:24623306)
GO_REF:0000024		 RGD
UniProt		 PMID:24623306 GO_REF:0000024 NCBI chr 1:73,652,441...73,659,388
Ensembl chr 1:73,652,709...73,659,380 		JBrowse link
G Trim33 tripartite motif-containing 33 enables ISO (PMID:26624618) RGD PMID:26624618 NCBI chr 2:190,812,329...190,892,663
Ensembl chr 2:190,807,243...190,888,814 		JBrowse link
G Usp3 ubiquitin specific peptidase 3 IDA RGD PMID:16279867 RGD:8657120 NCBI chr 8:67,078,249...67,154,109
Ensembl chr 8:67,079,927...67,154,111 		JBrowse link
G Wdr13 WD repeat domain 13 enables IBA
ISO		 GO_REF:0000033
(PMID:22715406)		 GO_Central
RGD		 PMID:22715406 GO_REF:0000033 NCBI chr  X:14,362,484...14,373,727
Ensembl chr  X:14,362,860...14,373,727 		JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 enables ISO (PMID:33913806) RGD PMID:33913806 NCBI chr 1:77,106,309...77,143,827
Ensembl chr 1:77,106,250...77,142,691 		JBrowse link
G Zfp609 zinc finger protein 609 enables ISO (PMID:28041881) RGD PMID:28041881 NCBI chr 8:66,214,553...66,349,319
Ensembl chr 8:66,214,555...66,317,977 		JBrowse link
G Zfp683 zinc finger protein 683 enables ISO (PMID:27102484) RGD PMID:27102484 NCBI chr 5:146,277,972...146,285,856
Ensembl chr 5:146,278,978...146,285,000 		JBrowse link
G Znf750 zinc finger protein 750 enables ISO
IBA		 (PMID:27907090)
GO_REF:0000033		 RGD
GO_Central		 PMID:27907090 GO_REF:0000033 NCBI chr10:106,772,162...106,781,186
Ensembl chr10:106,772,669...106,781,200 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21087
    binding 18096
      chromatin binding 691
        promoter-specific chromatin binding 86
paths to the root