Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:omegasome
go back to main search page
Accession:GO:1990462 term browser browse the term
Definition:Omega-shaped (as in the Greek capital letter) intracellular membrane-bounded organelle enriched in phosphatidylinositol 3-phosphate and dynamically connected to the endoplasmic reticulum. Omegasomes are the first step of the formation of autophagosomes via the phagophore assembly sites.



show annotations for term's descendants           Sort by:
omegasome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trim5 tripartite motif-containing 5 located_in ISO (PMID:25127057) RGD PMID:25127057 NCBI chr 1:158,720,407...158,737,393
Ensembl chr 1:158,720,410...158,814,012
JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 located_in ISO (PMID:24954904), (PMID:25876663), (PMID:31293035) RGD PMID:24954904 PMID:25876663 PMID:31293035 NCBI chr 6:103,184,938...103,234,111
Ensembl chr 6:103,184,938...103,234,039
JBrowse link
extrinsic component of omegasome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg14 autophagy related 14 located_in
is_active_in
ISO
IBA
(PMID:21518905)
GO_REF:0000033
RGD
GO_Central
PMID:21518905 GO_REF:0000033 NCBI chr15:20,795,750...20,827,113
Ensembl chr15:20,795,750...20,827,113
JBrowse link
G Zfyve1 zinc finger FYVE-type containing 1 located_in ISO (PMID:19898463) RGD PMID:19898463 NCBI chr 6:103,184,938...103,234,111
Ensembl chr 6:103,184,938...103,234,039
JBrowse link
omegasome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Emc6 ER membrane protein complex subunit 6 located_in ISO (PMID:23182941) RGD PMID:23182941 NCBI chr10:57,794,072...57,795,671
Ensembl chr10:57,793,685...57,796,217
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 located_in ISO (PMID:22885598) RGD PMID:22885598 NCBI chr12:45,851,710...45,877,966
Ensembl chr12:45,851,710...45,877,966
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20824
    cellular anatomical structure 20625
      endomembrane system 4339
        omegasome 5
          omegasome membrane + 4
Path 2
Term Annotations click to browse term
  cellular_component 20824
    cellular anatomical structure 20625
      organelle 13967
        membrane-bounded organelle 12555
          intracellular membrane-bounded organelle 12003
            omegasome 5
              omegasome membrane + 4
paths to the root