Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of lysosome organization
go back to main search page
Accession:GO:1905671 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of lysosome organization.
Synonyms:exact_synonym: regulation of lysosome organisation
 related_synonym: regulation of lysosome organization and biogenesis


show annotations for term's descendants           Sort by:
regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grn granulin precursor acts_upstream_of_or_within ISO MGI:3762618 (PMID:28728022) RGD PMID:28728022 NCBI chr10:87,887,834...87,893,938
Ensembl chr10:87,387,638...87,393,775 		JBrowse link
G Laptm4b lysosomal protein transmembrane 4 beta involved_in ISO
IEA
ISS		 (PMID:26280656)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:26280656 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:67,319,438...67,362,547
Ensembl chr 7:65,434,394...65,477,383 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
ISS		 (PMID:22692423)
GO_REF:0000024		 RGD
UniProt		 PMID:22692423 GO_REF:0000024 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Tfeb transcription factor EB involved_in ISO (PMID:22692423), (PMID:35662396) RGD PMID:22692423 PMID:35662396 NCBI chr 9:20,696,440...20,752,265
Ensembl chr 9:13,198,891...13,254,714 		JBrowse link
G Tmem106b transmembrane protein 106B acts_upstream_of_or_within ISO MGI:5319917 (PMID:28728022) RGD PMID:28728022 NCBI chr 4:42,294,074...42,313,426
Ensembl chr 4:41,327,994...41,345,619 		JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO MGI:3052754 (PMID:23160154) RGD PMID:23160154 NCBI chr 8:118,585,082...118,586,382
Ensembl chr 8:109,706,613...109,708,796 		JBrowse link
negative regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Flcn folliculin involved_in ISO (PMID:37079666) RGD PMID:37079666 NCBI chr10:45,088,164...45,107,581
Ensembl chr10:44,588,624...44,607,769 		JBrowse link
G Fnip1 folliculin interacting protein 1 involved_in ISO (PMID:37079666) RGD PMID:37079666 NCBI chr10:39,068,432...39,151,552
Ensembl chr10:38,567,729...38,650,824 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
ISS
IEA		 (PMID:24448649), (PMID:32612235)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:24448649 PMID:32612235 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
positive regulation of lysosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grn granulin precursor involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:28073925)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:28073925 GO_REF:0000024 GO_REF:0000107 NCBI chr10:87,887,834...87,893,938
Ensembl chr10:87,387,638...87,393,775 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:32753672) RGD PMID:32753672 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Mcoln1 mucolipin TRP cation channel 1 involved_in ISO (PMID:25720963) RGD PMID:25720963 NCBI chr12:6,357,851...6,372,151
Ensembl chr12:1,560,359...1,574,252 		JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in ISO (PMID:25720963), (PMID:32753672) RGD PMID:25720963 PMID:32753672 NCBI chr15:3,809,182...3,854,204
Ensembl chr15:3,760,030...3,804,981 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20546
    cellular process 19536
      regulation of cellular process 13025
        regulation of cellular component organization 2710
          regulation of organelle organization 1220
            regulation of vacuole organization 60
              regulation of lysosome organization 12
                negative regulation of lysosome organization 4
                positive regulation of lysosome organization 4
Path 2
Term Annotations click to browse term
  biological_process 20546
    cellular process 19536
      cellular component organization or biogenesis 7196
        cellular component organization 6911
          organelle organization 3697
            vacuole organization 231
              lytic vacuole organization 93
                lysosome organization 93
                  regulation of lysosome organization 12
                    negative regulation of lysosome organization 4
                    positive regulation of lysosome organization 4
paths to the root