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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
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Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization


show annotations for term's descendants           Sort by:
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) RGD PMID:22186024 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:153,292,751...153,312,139 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) RGD PMID:23707074 NCBI chr 2:176,902,141...176,916,015
Ensembl chr 2:174,609,403...174,618,263 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 alpha acts_upstream_of_or_within ISO MGI:2685045 (PMID:24098492) RGD PMID:24098492 NCBI chr 1:180,012,248...180,117,786
Ensembl chr 1:170,577,942...170,683,472 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta acts_upstream_of_or_within ISO MGI:1203729 (PMID:24098492) RGD PMID:24098492 NCBI chr13:47,046,866...47,107,733
Ensembl chr13:44,495,050...44,555,612 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) RGD PMID:25365221 NCBI chr 3:129,453,118...129,526,469
Ensembl chr 3:109,008,135...109,072,911 		JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:25365221)
GO_REF:0000107		 RGD
Ensembl		 PMID:25365221 GO_REF:0000107 NCBI chr 6:103,764,864...103,828,520
Ensembl chr 6:98,032,520...98,095,480 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07040864.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO
IBA		 (PMID:20921139), (PMID:25215947)
GO_REF:0000033
(PMID:23524951)		 RGD
GO_Central		 PMID:20921139 PMID:23524951 PMID:25215947 GO_REF:0000033 NCBI chr 3:98,156,626...98,345,876
Ensembl chr 3:77,700,936...77,890,221 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO
ISS		 (PMID:29180427)
GO_REF:0000024		 RGD
UniProt		 PMID:29180427 GO_REF:0000024 NCBI chr12:22,163,474...22,171,734
Ensembl chr12:17,049,777...17,058,026 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO MGI:4460281 (PMID:30930081) RGD PMID:30930081 NCBI chr12:17,207,315...17,222,975
Ensembl chr12:12,093,834...12,108,511 		JBrowse link
G Atg10 autophagy related 10 involved_in ISO
IBA		 (PMID:16963840)
GO_REF:0000033		 RGD
GO_Central		 PMID:16963840 GO_REF:0000033 NCBI chr 2:23,843,695...24,133,459
Ensembl chr 2:22,108,426...22,398,233 		JBrowse link
G Atg101 autophagy related 101 involved_in ISO
IBA
IEA		 (PMID:19225151), (PMID:19597335)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:19225151 PMID:19597335 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:134,277,223...134,286,387
Ensembl chr 7:132,398,483...132,407,633 		JBrowse link
G Atg12 autophagy related 12 involved_in IEA
IBA
ISO		 GO_REF:0000002
GO_REF:0000033
(PMID:11266458)		 InterPro
GO_Central
RGD		 PMID:11266458 GO_REF:0000002 GO_REF:0000033 NCBI chr18:41,638,841...41,649,311
Ensembl chr18:39,452,191...39,462,418 		JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO (PMID:19211835)
(PMID:19225151), (PMID:19258318)
(PMID:19211835), (PMID:19225151)		 RGD PMID:19211835 PMID:19225151 PMID:19258318 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:77,645,790...77,681,043 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO
IBA		 (PMID:19270696), (PMID:20713597)
GO_REF:0000033		 RGD
GO_Central		 PMID:19270696 PMID:20713597 GO_REF:0000033 NCBI chr15:23,275,457...23,306,817
Ensembl chr15:20,795,750...20,827,113 		JBrowse link
G Atg16l1 autophagy related 16-like 1 involved_in ISO
IBA		 (PMID:30778222)
(PMID:11266458)
GO_REF:0000033		 RGD
GO_Central		 PMID:11266458 PMID:30778222 GO_REF:0000033 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg16l2 autophagy related 16-like 2 NOT|involved_in ISO (PMID:22082872)
(PMID:11266458)		 RGD PMID:11266458 PMID:22082872 NCBI chr 1:165,100,946...165,123,307
Ensembl chr 1:155,684,564...155,703,420 		JBrowse link
G Atg2a autophagy related 2A involved_in ISO
IBA		 (PMID:28561066)
GO_REF:0000033		 RGD
GO_Central		 PMID:28561066 GO_REF:0000033 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:203,542,559...203,562,242 		JBrowse link
G Atg2b autophagy related 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:130,286,979...130,357,109
Ensembl chr 6:124,525,523...124,592,015 		JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:20723759), (PMID:24747438)
(PMID:21220506)
GO_REF:0000033
GO_REF:0000107
(PMID:33446636)		 UniProt
RGD
GO_Central
Ensembl		 PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr11:69,130,948...69,159,280
Ensembl chr11:55,624,917...55,653,224 		JBrowse link
G Atg4a autophagy related 4A, cysteine peptidase involved_in ISO
IBA		 (PMID:21177865)
GO_REF:0000033		 RGD
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr  X:109,453,712...109,553,758
Ensembl chr  X:104,665,345...104,765,268 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IBA		 (PMID:21177865)
(PMID:25578879)
GO_REF:0000033		 RGD
GO_Central		 PMID:21177865 PMID:25578879 GO_REF:0000033 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
G Atg4c autophagy related 4C, cysteine peptidase involved_in ISO
IBA		 (PMID:21177865)
GO_REF:0000033		 RGD
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr 5:118,977,594...119,050,894
Ensembl chr 5:113,867,092...113,934,830 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO
IBA		 (PMID:21177865)
GO_REF:0000033		 RGD
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:19,807,766...19,817,321 		JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within		 IMP
IBA
ISO
IEA		 GO_REF:0000033
(PMID:11266458)
(PMID:23704209)
GO_REF:0000107
(PMID:23202584)		 GO_Central
RGD
Ensembl		 PMID:11266458 PMID:23202584 PMID:23704209 PMID:16420522 GO_REF:0000033 GO_REF:0000107, RGD:1643189 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:22170151)
GO_REF:0000033
(PMID:20080761)
(PMID:23704209)
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:20080761 PMID:22170151 PMID:23704209 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in		 ISO
IEA
ISS		 (PMID:15755735), (PMID:22456507)
GO_REF:0000107
MGI:4417824 (PMID:22456507), (PMID:23402761)
GO_REF:0000024
(PMID:29180427), (PMID:29437695), (PMID:32513819), (PMID:33468622)		 RGD
Ensembl
UniProt		 PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... GO_REF:0000024 GO_REF:0000107 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) RGD PMID:15755735 NCBI chr 4:11,678,548...11,686,097
Ensembl chr 4:10,786,114...10,793,651 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:28890335)		 UniProt
GO_Central
RGD		 PMID:28890335 GO_REF:0000024 GO_REF:0000033 NCBI chr12:39,733,519...39,782,942
Ensembl chr12:34,072,683...34,122,101 		JBrowse link
G Becn1 beclin 1 involved_in IMP
ISO
IBA
ISS		 (PMID:23332761)
GO_REF:0000033
(PMID:25891078)
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:23332761 PMID:25891078 PMID:16420522 GO_REF:0000024 GO_REF:0000033, RGD:1643189 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Becn2 beclin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:90,375,186...90,424,533
Ensembl chr13:87,844,531...87,845,787 		JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:15452145)
GO_REF:0000107		 RGD
Ensembl		 PMID:15452145 GO_REF:0000107 NCBI chr 1:206,956,945...206,968,821
Ensembl chr 1:197,527,467...197,539,488 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO
IBA		 (PMID:21072319)
GO_REF:0000033		 RGD
GO_Central		 PMID:21072319 GO_REF:0000033 NCBI chr 2:198,777,323...198,856,497
Ensembl chr 2:196,091,646...196,168,716 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO
IBA		 (PMID:23182941)
GO_REF:0000033		 RGD
GO_Central		 PMID:23182941 GO_REF:0000033 NCBI chr10:58,292,584...58,293,850
Ensembl chr10:57,793,685...57,796,217 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2182627 (PMID:24430976)		 Ensembl
RGD		 PMID:24430976 GO_REF:0000107 NCBI chr 1:7,547,369...7,673,449
Ensembl chr 1:5,727,066...5,920,555 		JBrowse link
G Gabarap GABA type A receptor-associated protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:55,213,465...55,216,787
Ensembl chr10:54,714,198...54,717,765 		JBrowse link
G Gabarapl1 GABA type A receptor associated protein like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:164,666,332...164,675,474
Ensembl chr 4:162,980,249...162,989,450 		JBrowse link
G Gabarapl2 GABA type A receptor associated protein like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:56,819,826...56,830,662
Ensembl chr19:39,910,534...39,924,628 		JBrowse link
G Gabarapl3 GABA type A receptor associated protein like 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:98,126,056...98,127,013
Ensembl chr 8:89,246,195...89,247,139 		JBrowse link
G Gabarapl4 gamma-aminobutyric acid receptor associated protein like 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:71,949,837...71,950,435
Ensembl chr19:55,052,756...55,053,109 		JBrowse link
G Ifgga2l1 interferon-gamma-inducible GTPase 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,761,118...53,770,183
Ensembl chr18:53,748,631...53,772,834 		JBrowse link
G Ifgga2l2 interferon-gamma-inducible GTPase 2 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,870,838...53,890,135
Ensembl chr18:53,870,795...53,892,024 		JBrowse link
G Ifgga4l interferon-gamma-inducible GTPase 4 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:53,838,426...53,854,858
Ensembl chr18:53,851,449...53,852,696 		JBrowse link
G Ifi47 interferon gamma inducible protein 47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,297,618...33,305,248
Ensembl chr10:33,285,450...33,306,216 		JBrowse link
G Igtp interferon gamma induced GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:42,374,590...42,382,410
Ensembl chr10:42,357,400...42,408,247 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISO
IBA		 (PMID:16888103)
GO_REF:0000033		 RGD
GO_Central		 PMID:16888103 GO_REF:0000033 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G LOC134483037 interferon-inducible GTPase 1-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha involved_in ISO
IBA
IDA		 (PMID:24290141)
GO_REF:0000033
PMID:11060023		 RGD
GO_Central		 PMID:24290141 PMID:11060023 GO_REF:0000033, RGD:8554284 NCBI chr 3:164,243,204...164,244,850
Ensembl chr 3:143,783,024...143,784,670 		JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta involved_in ISO
IBA		 (PMID:37943659)
GO_REF:0000033		 RGD
GO_Central		 PMID:37943659 GO_REF:0000033 NCBI chr19:66,571,631...66,582,270
Ensembl chr19:49,665,791...49,677,690
Ensembl chr16:49,665,791...49,677,690 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO MGI:2450997 (PMID:23695157) RGD PMID:23695157 NCBI chr 6:6,234,917...6,252,874
Ensembl chr 6:488,969...506,860 		JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:160,438,708...160,463,261
Ensembl chr 3:139,978,301...140,002,870 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:137,918,040...137,977,767
Ensembl chr 6:132,096,901...132,154,583 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 IMP
ISO
IBA		 (PMID:24098492)
GO_REF:0000033
(PMID:33637724)		 RGD
GO_Central		 PMID:24098492 PMID:33637724 PMID:12453151 GO_REF:0000033, RGD:2303129 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:2149116 (PMID:15452145) RGD PMID:15452145 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rab19 RAB19, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:69,123,962...69,133,691
Ensembl chr 4:68,156,881...68,166,886 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO
IBA
ISS		 (PMID:22939626)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:22939626 GO_REF:0000024 GO_REF:0000033 NCBI chr14:98,623,582...98,648,766
Ensembl chr14:94,415,275...94,448,248 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:211,835,133...211,843,408
Ensembl chr 1:202,405,759...202,413,868
Ensembl chr  X:202,405,759...202,413,868 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IBA		 (PMID:22452336)
GO_REF:0000033		 RGD
GO_Central		 PMID:22452336 GO_REF:0000033 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:35,944,085...35,966,927 		JBrowse link
G Rab33a RAB33A, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:132,572,133...132,584,255
Ensembl chr  X:127,694,964...127,706,378 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IBA
ISO		 GO_REF:0000033
(PMID:18448665)		 GO_Central
RGD		 PMID:18448665 GO_REF:0000033 NCBI chr 2:137,678,953...137,689,581
Ensembl chr 2:135,528,116...135,538,719 		JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:121,806,992...121,826,694
Ensembl chr 4:120,249,879...120,269,174 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) RGD PMID:19956673 NCBI chr 4:122,019,281...122,068,067
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rb1cc1 RB1-inducible coiled-coil 1 involved_in ISO
IBA		 (PMID:19225151), (PMID:28890335)
(PMID:19225151), (PMID:19258318)
GO_REF:0000033
(PMID:23392225)		 RGD
GO_Central		 PMID:19225151 PMID:19258318 PMID:23392225 PMID:28890335 GO_REF:0000033 NCBI chr 5:17,948,522...18,012,434
Ensembl chr 5:13,161,648...13,225,560 		JBrowse link
G RGD1309362 similar to interferon-inducible GTPase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:55,943,741...55,969,375 JBrowse link
G RGD1559575 similar to novel protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:33,252,146...33,276,364
Ensembl chr10:33,252,134...33,276,225 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO
IBA		 (PMID:26416964)
GO_REF:0000033		 RGD
GO_Central		 PMID:26416964 GO_REF:0000033 NCBI chr 9:83,152,139...83,172,683
Ensembl chr 9:75,703,750...75,723,525 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:30568238)
GO_REF:0000033
(PMID:30568238), (PMID:30842662), (PMID:37535724)
GO_REF:0000107		 UniProt
RGD
GO_Central
Ensembl		 PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr18:27,606,196...27,612,544
Ensembl chr18:27,332,119...27,338,335 		JBrowse link
G Stx12 syntaxin 12 involved_in ISO
IBA
IEA		 (PMID:24095276)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:24095276 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:150,347,554...150,376,426
Ensembl chr 5:145,063,587...145,092,377 		JBrowse link
G Synpo2 synaptopodin 2 involved_in IMP PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 2:213,901,685...214,055,844
Ensembl chr 2:211,216,783...211,371,267 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO (PMID:23908015) RGD PMID:23908015 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:30093494), (PMID:30126924), (PMID:30933966)		 UniProt
GO_Central
RGD		 PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:173,447,362...173,461,760
Ensembl chr 1:164,012,592...164,026,933 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:29,051,267...29,069,486
Ensembl chr 5:24,260,568...24,267,968 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO
IBA
IEA
ISS		 (PMID:19056683)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:19056683 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:164,341,618...164,350,270
Ensembl chr 3:143,882,021...143,890,097 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO
IEA		 (PMID:23524951)
GO_REF:0000107		 RGD
Ensembl		 PMID:23524951 GO_REF:0000107 NCBI chr 3:108,418,537...108,443,330
Ensembl chr 3:87,963,514...87,983,507 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483
Ensembl chr 5:78,999,389...79,022,018 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO
IBA
IEA		 (PMID:20529957)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:20529957 GO_REF:0000033 GO_REF:0000107 NCBI chr17:6,438,456...6,482,498
Ensembl chr17:6,439,002...6,477,090 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:21,228,809...21,232,228
Ensembl chr  X:17,853,114...17,856,505 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:33,603,804...33,645,958
Ensembl chr 6:27,884,680...27,912,649
Ensembl chr20:27,884,680...27,912,649 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:24,101,187...24,129,205
Ensembl chr 5:19,303,682...19,326,849 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO
IBA		 (PMID:19225151), (PMID:28890335)
GO_REF:0000033
(PMID:19225151), (PMID:19258318)		 RGD
GO_Central		 PMID:19225151 PMID:19258318 PMID:28890335 GO_REF:0000033 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Ulk2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:46,951,038...47,029,844
Ensembl chr10:46,454,030...46,530,407 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:66,888,820...66,895,380
Ensembl chr 8:57,992,723...57,999,467 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO
IBA
IEA
ISS		 (PMID:28890335), (PMID:30093494), (PMID:30933966)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:71,903,223...72,002,337
Ensembl chr10:71,405,452...71,505,007 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS		 (PMID:28561066)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:28561066 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:106,599,364...106,629,441 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) RGD PMID:28561066 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:20505359), (PMID:28561066), (PMID:28890335)		 UniProt
RGD		 PMID:20505359 PMID:28561066 PMID:28890335 GO_REF:0000024 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:9,635,025...9,726,519 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO MGI:2683833 (PMID:27994061) RGD PMID:27994061 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:3,924,263...3,941,238
Ensembl chr20:3,919,624...3,941,547 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO
ISS		 (PMID:25495476)
GO_REF:0000024		 RGD
GO_Central		 PMID:25495476 GO_REF:0000024 NCBI chr 8:44,733,288...44,778,519
Ensembl chr 8:36,544,535...36,589,683 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:25495476)		 GO_Central
Ensembl
RGD		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:22,406,685...22,446,745
Ensembl chr 6:16,654,614...16,694,626 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 involved_in ISO (PMID:23916833) RGD PMID:23916833 NCBI chr 7:124,706,246...124,867,234
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Mtm1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2450997 (PMID:23695157)		 GO_Central
RGD		 PMID:23695157 GO_REF:0000033 NCBI chr 6:6,234,917...6,252,874
Ensembl chr 6:488,969...506,860 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISS
ISO		 GO_REF:0000024
(PMID:20181828)		 UniProt
RGD		 PMID:20181828 GO_REF:0000024 NCBI chr 1:190,643,866...190,645,901
Ensembl chr 1:181,213,368...181,215,281 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO
IBA
IEA
ISS		 (PMID:25484098)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl		 PMID:25484098 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:55,217,351...55,221,471
Ensembl chr10:54,717,724...54,722,782 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) RGD PMID:19279012 NCBI chr 5:155,813,838...155,825,950
Ensembl chr 5:150,530,523...150,542,635 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 6:74,531,225...74,609,463
Ensembl chr 6:68,795,878...68,874,078 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) RGD PMID:21242315 NCBI chr 2:188,188,783...188,209,565
Ensembl chr 2:185,500,004...185,522,026 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) RGD PMID:28195531 NCBI chr10:45,957,146...45,968,388
Ensembl chr10:45,457,605...45,468,876 		JBrowse link
G Tmem39a transmembrane protein 39a involved_in ISO
IBA
ISS		 (PMID:31806350)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:31806350 GO_REF:0000024 GO_REF:0000033 NCBI chr11:75,666,154...75,695,486
Ensembl chr11:62,160,631...62,189,964 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07028769.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) RGD PMID:30952800 PMID:31271352 NCBI chr 1:212,971,822...212,991,505
Ensembl chr 1:203,542,559...203,562,242 		JBrowse link
G Atg7 autophagy related 7 IMP RGD PMID:33372336 RGD:407571673 NCBI chr 4:149,390,000...149,597,534
Ensembl chr 4:147,718,752...147,925,593 		JBrowse link
G Becn1 beclin 1 IMP RGD PMID:25561470 RGD:11561937 NCBI chr10:86,731,649...86,747,002
Ensembl chr10:86,231,388...86,246,742 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) RGD PMID:21072319 NCBI chr 2:198,777,323...198,856,497
Ensembl chr 2:196,091,646...196,168,716 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) RGD PMID:25484098 NCBI chr 3:36,621,042...36,661,932
Ensembl chr 3:16,223,367...16,264,154 		JBrowse link
G Moap1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) RGD PMID:33783314 NCBI chr 6:127,647,389...127,649,324
Ensembl chr 6:121,882,366...121,898,643
Ensembl chr17:121,882,366...121,898,643 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr17:86,405,080...86,576,597
Ensembl chr17:81,496,670...81,668,029 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr10:83,202,379...83,231,292
Ensembl chr10:82,701,098...82,734,938 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO
IEA		 (PMID:25578879)
GO_REF:0000107		 RGD
Ensembl		 PMID:25578879 GO_REF:0000107 NCBI chr 7:64,905,322...64,920,380
Ensembl chr 7:63,020,000...63,035,078 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IBA
IEA
ISS		 (PMID:25495476)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl		 PMID:25495476 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:41,908,179...41,981,611
Ensembl chr13:39,352,247...39,429,169 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:25495476)		 GO_Central
Ensembl
RGD		 PMID:25495476 GO_REF:0000024 GO_REF:0000107 NCBI chr13:99,288,984...99,362,817
Ensembl chr13:96,757,460...96,829,478 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO
IEA		 (PMID:24056301)
GO_REF:0000107		 RGD
Ensembl		 PMID:24056301 GO_REF:0000107 NCBI chr13:33,140,834...33,176,997
Ensembl chr13:30,588,033...30,624,202 		JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 involved_in ISO
IEA		 (PMID:21068542)
GO_REF:0000107		 RGD
Ensembl		 PMID:21068542 GO_REF:0000107 NCBI chr 2:236,411,194...236,445,225
Ensembl chr 2:233,750,838...233,784,784 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) RGD PMID:29437695 NCBI chr 2:46,965,498...46,991,516
Ensembl chr 2:45,232,325...45,258,345 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 5:79,478,804...79,608,118
Ensembl chr 5:74,684,015...74,792,631 		JBrowse link
G Snx4 sorting nexin 4 involved_in ISO
IBA		 (PMID:32513819), (PMID:33468622)
GO_REF:0000033		 RGD
GO_Central		 PMID:32513819 PMID:33468622 GO_REF:0000033 NCBI chr11:80,965,965...81,023,234
Ensembl chr11:67,460,870...67,518,174 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) RGD PMID:32513819 NCBI chr 2:208,528,041...208,612,597
Ensembl chr 2:205,842,837...205,927,763 		JBrowse link
G Trim32 tripartite motif-containing 32 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr 5:84,020,604...84,031,483
Ensembl chr 5:78,999,389...79,022,018 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 IMP RGD PMID:23448468 RGD:13208863 NCBI chr12:51,511,492...51,537,746
Ensembl chr12:45,851,710...45,877,966 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO
IEA
ISS		 (PMID:31271352)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:31271352 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) RGD PMID:31271352 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:33372336 RGD:407571673 NCBI chr12:7,441,699...7,482,625
Ensembl chr12:2,645,061...2,684,784 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) RGD PMID:23918802 NCBI chr20:49,380,835...49,471,826
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Irgm immunity-related GTPase M involved_in ISO (PMID:28389568) RGD PMID:28389568 NCBI chr10:33,734,640...33,742,720
Ensembl chr10:33,233,455...33,241,578 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) RGD PMID:24954904 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO
ISS		 (PMID:33773106)
GO_REF:0000024		 RGD
UniProt		 PMID:33773106 GO_REF:0000024 NCBI chr 1:169,387,484...169,392,290
Ensembl chr 1:159,974,201...159,980,336 		JBrowse link
G Atg13 autophagy related 13 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:98,102,831...98,136,741
Ensembl chr 3:77,645,790...77,681,043 		JBrowse link
G Atg16l1 autophagy related 16-like 1 acts_upstream_of_or_within ISO PR:Q80W47 (PMID:24954904) RGD PMID:24954904 NCBI chr 9:95,869,839...95,905,354
Ensembl chr 9:88,422,038...88,457,529 		JBrowse link
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO
IEA		 (PMID:33773106)
GO_REF:0000107		 RGD
Ensembl		 PMID:33773106 GO_REF:0000107 NCBI chr 9:101,729,772...101,761,456
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
G Atg4d autophagy related 4D, cysteine peptidase involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 8:28,083,902...28,093,491
Ensembl chr 8:19,807,766...19,817,321 		JBrowse link
G Atg9a autophagy related 9A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:84,126,071...84,136,723
Ensembl chr 9:76,677,404...76,687,986 		JBrowse link
G Atg9b autophagy related 9B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,678,548...11,686,097
Ensembl chr 4:10,786,114...10,793,651 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) RGD PMID:33773106 NCBI chr 2:173,919,330...174,500,536
Ensembl chr 2:171,621,507...172,202,724 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425)
GO_REF:0000107		 RGD
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:158,304,287...158,335,342 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 6:137,918,040...137,977,767
Ensembl chr 6:132,096,901...132,154,583 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:24098492)		 Ensembl
RGD		 PMID:24098492 GO_REF:0000107 NCBI chr18:22,119,677...22,203,546
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) RGD PMID:23455425 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:62,446,187...62,504,451 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:17,448,195...17,454,117
Ensembl chr  X:14,776,293...14,782,202 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:107,097,655...107,127,839
Ensembl chr10:106,599,364...106,629,441 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:95,042,451...95,079,679
Ensembl chr10:94,542,946...94,579,846 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 ISO
IBA
ISS		 (PMID:28561066)
PR:Q8C0J2 (PMID:24954904)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:24954904 PMID:28561066 GO_REF:0000024 GO_REF:0000033 NCBI chr12:17,024,876...17,053,306
Ensembl chr12:11,911,337...11,939,794 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:37943659) RGD PMID:37943659 NCBI chr12:51,448,838...51,481,159
Ensembl chr12:45,788,827...45,821,286 		JBrowse link
G Efnb1 ephrin B1 involved_in
acts_upstream_of_positive_effect		 IEA
ISO		 GO_REF:0000107
(PMID:33280498)		 Ensembl
RGD		 PMID:33280498 GO_REF:0000107 NCBI chr  X:68,297,529...68,310,335
Ensembl chr  X:64,257,351...64,270,157 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_positive_effect ISO (PMID:33280498) RGD PMID:33280498 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (PMID:24089209) RGD PMID:24089209 NCBI chr10:63,930,629...63,936,174
Ensembl chr10:63,432,633...63,438,124 		JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) RGD PMID:24089209 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25578879)		 Ensembl
RGD		 PMID:25578879 GO_REF:0000107 NCBI chr14:83,564,065...83,684,573
Ensembl chr14:79,340,513...79,461,041 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO
IEA		 (PMID:23524951)
GO_REF:0000107		 RGD
Ensembl		 PMID:23524951 GO_REF:0000107 NCBI chr 5:164,167,985...164,277,438
Ensembl chr 5:158,884,804...158,994,311 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) RGD PMID:25578879 NCBI chr 9:74,057,488...74,151,610
Ensembl chr 9:66,563,727...66,657,868 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) RGD PMID:20545908 NCBI chr 1:211,835,133...211,843,408
Ensembl chr 1:202,405,759...202,413,868
Ensembl chr  X:202,405,759...202,413,868 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 involved_in ISO
IEA
ISS		 (PMID:27334615)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27334615 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:54,562,570...54,587,649
Ensembl chr 5:49,766,325...49,791,408 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) RGD PMID:33280498 NCBI chr 5:156,493,750...156,494,974
Ensembl chr 5:151,210,492...151,211,716 		JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO MGI:3775796 (PMID:23093945) RGD PMID:23093945 NCBI chr20:4,150,032...4,152,593
Ensembl chr20:4,145,507...4,147,985 		JBrowse link
G Tbc1d12 TBC1 domain family, member 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:236,603,597...236,685,859
Ensembl chr 1:236,603,607...236,685,859 		JBrowse link
G Tbc1d14 TBC1 domain family, member 14 involved_in ISO
IBA
IEA		 (PMID:22613832)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:22613832 GO_REF:0000033 GO_REF:0000107 NCBI chr14:78,397,345...78,496,863
Ensembl chr14:74,172,664...74,272,183 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) RGD PMID:20529957 NCBI chr  X:21,228,809...21,232,228
Ensembl chr  X:17,853,114...17,856,505 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in IMP
IBA
ISO		 GO_REF:0000033
(PMID:22186024)		 GO_Central
RGD		 PMID:22186024 PMID:22186024 GO_REF:0000033, RGD:13442482 NCBI chr 5:158,575,727...158,595,157
Ensembl chr 5:153,292,751...153,312,139 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:25878248) RGD PMID:25878248 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISS
ISO		 GO_REF:0000024
(PMID:32492081)		 UniProt
RGD		 PMID:32492081 GO_REF:0000024 NCBI chr 5:159,355,279...159,389,267
Ensembl chr 5:154,075,261...154,106,136 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgq immunity-related GTPase Q involved_in ISO (PMID:39481378) RGD PMID:39481378 NCBI chr 1:89,251,846...89,259,799
Ensembl chr 1:80,123,925...80,131,881 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) RGD PMID:22020285 NCBI chr12:14,748,717...14,840,273
Ensembl chr12:9,635,025...9,726,519 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO MGI:6356543 (PMID:20810658), (PMID:27358407) RGD PMID:20810658 PMID:27358407 NCBI chr14:15,754,769...15,758,174
Ensembl chr14:15,469,582...15,477,443 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) RGD PMID:23023224 NCBI chr19:13,411,227...13,446,129
Ensembl chr19:13,405,501...13,440,384 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20546
    cellular process 19536
      process utilizing autophagic mechanism 555
        autophagy 555
          macroautophagy 334
            autophagosome organization 136
              autophagosome assembly + 127
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 20546
    cellular process 19536
      cellular component organization or biogenesis 7196
        cellular component organization 6911
          organelle organization 3697
            vacuole organization 231
              autophagosome organization 136
                autophagosome assembly + 127
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root