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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
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Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization


show annotations for term's descendants           Sort by:
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:75,618,317...75,638,591
Ensembl chr 6:75,618,319...75,638,591 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 4:94,583,905...94,606,689
Ensembl chr 4:94,584,134...94,609,745 		JBrowse link
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chr 2:41,829,969...42,024,062
Ensembl chr 2:41,829,916...42,024,362 		JBrowse link
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:65,073,728...65,154,861
Ensembl chr 9:65,073,738...65,154,538 		JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:126,890,464...126,998,014
Ensembl chr 1:126,902,186...127,003,397
Ensembl chr 1:126,902,186...127,003,397 		JBrowse link
G ZFYVE26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:91,518,444...91,590,480
Ensembl chr 7:91,518,452...91,590,449 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:15,935,354...16,119,082
Ensembl chr 2:15,935,375...16,119,079 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:8,013,701...8,017,701
Ensembl chr 3:8,013,747...8,017,700 		JBrowse link
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 3:3,622,684...3,642,370
Ensembl chr 3:3,622,699...3,642,412 		JBrowse link
G ATG10 autophagy related 10 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:90,436,795...90,665,383
Ensembl chr 2:90,437,027...90,666,196 		JBrowse link
G ATG101 autophagy related 101 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:17,418,085...17,425,770
Ensembl chr 5:17,418,121...17,425,624 		JBrowse link
G ATG12 autophagy related 12 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:119,948,443...119,965,702
Ensembl chr 2:119,941,997...119,965,696 		JBrowse link
G ATG13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19211835) MGI
Ensembl
InterPro		 PMID:19211835 GO_REF:0000002 GO_REF:0000107 NCBI chr 2:15,856,859...15,916,122
Ensembl chr 2:15,856,860...15,916,109 		JBrowse link
G ATG14 autophagy related 14 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:184,701,020...184,743,752
Ensembl chr 1:184,686,142...184,743,706 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,298...133,693,468 		JBrowse link
G ATG16L2 autophagy related 16 like 2 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:22082872) Ensembl
UniProt
InterPro		 PMID:22082872 GO_REF:0000002 GO_REF:0000107 NCBI chr 9:7,346,973...7,360,189
Ensembl chr 9:7,347,002...7,365,625 		JBrowse link
G ATG2A autophagy related 2A involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:7,261,819...7,282,614
Ensembl chr 2:7,262,031...7,282,347 		JBrowse link
G ATG2B autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:117,506,298...117,586,651
Ensembl chr 7:117,506,302...117,586,545 		JBrowse link
G ATG3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:21220506) Ensembl
MGI
GO_Central		 PMID:21220506 GO_REF:0000033 GO_REF:0000107 NCBI chr13:147,279,110...147,309,597
Ensembl chr13:147,279,437...147,309,590 		JBrowse link
G ATG4A autophagy related 4A cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:88,545,924...88,633,328
Ensembl chr  X:88,548,751...88,633,321 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:140,223,903...140,245,590
Ensembl chr15:140,223,904...140,246,321 		JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:149,560,318...149,691,959
Ensembl chr 6:149,608,220...149,692,153 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:69,320,313...69,328,522
Ensembl chr 2:69,320,331...69,328,519 		JBrowse link
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:23704209) RGD
GO_Central
MGI
Ensembl		 PMID:16420522 PMID:23704209 GO_REF:0000033 GO_REF:0000107 RGD:1643189 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
G ATG7 autophagy related 7 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:23704209) Ensembl
GO_Central
MGI		 PMID:23704209 GO_REF:0000033 GO_REF:0000107 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,654 		JBrowse link
G ATG9A autophagy related 9A involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr15:121,254,355...121,265,564
Ensembl chr15:121,254,355...121,265,569 		JBrowse link
G ATG9B autophagy related 9B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:6,200,246...6,208,988
Ensembl chr18:6,200,639...6,208,286 		JBrowse link
G ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in IEA
IBA
ISS		 Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:31,674,659...31,744,981
Ensembl chr14:31,674,757...31,744,969 		JBrowse link
G BAG3 BAG cochaperone 3 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr14:129,510,240...129,533,998
Ensembl chr14:129,466,905...129,533,993 		JBrowse link
G BECN1 beclin 1 involved_in ISO
IBA
IEA
ISS		 RGD
GO_Central
Ensembl
UniProt		 PMID:16420522 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 RGD:1643189 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G BECN2 beclin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:15,388,712...15,390,250
Ensembl chr10:15,388,605...15,390,226 		JBrowse link
G CTSD cathepsin D acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:1,188,548...1,197,642
Ensembl chr 2:1,188,549...1,197,643 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:110,881,770...110,954,092
Ensembl chr 4:110,881,768...110,953,967 		JBrowse link
G EMC6 ER membrane protein complex subunit 6 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:49,759,153...49,760,069
Ensembl chr12:49,759,163...49,760,065 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:19,806,363...19,893,350
Ensembl chr 1:19,806,765...19,893,339 		JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:52,596,130...52,598,166
Ensembl chr12:52,596,543...52,598,194 		JBrowse link
G GABARAPL1 GABA type A receptor associated protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:61,758,127...61,767,427
Ensembl chr 5:61,758,130...61,767,601 		JBrowse link
G GABARAPL2 GABA type A receptor associated protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:12,122,219...12,132,986
Ensembl chr 6:12,107,422...12,132,991 		JBrowse link
G LOC102158581 gamma-aminobutyric acid receptor-associated protein pseudogene involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:76,675,741...76,676,338 JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:37,957,830...37,959,505
Ensembl chr17:37,957,507...37,959,505 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:1,919,879...1,941,069
Ensembl chr 6:1,915,387...1,941,069 		JBrowse link
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:15,371,182...15,379,067
Ensembl chr10:15,372,879...15,379,172 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chr  X:122,286,904...122,379,302
Ensembl chr  X:122,286,916...122,379,299 		JBrowse link
G NSFL1C NSFL1 cofactor involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:33,869,487...33,890,873
Ensembl chr17:33,869,527...33,892,064 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 RGD
Ensembl
GO_Central		 PMID:12453151 GO_REF:0000033 GO_REF:0000107 RGD:2303129 NCBI chr 6:125,890,598...126,038,753
Ensembl chr 6:125,890,712...126,043,157 		JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:96,478,179...96,567,884
Ensembl chr 7:96,478,190...96,569,130 		JBrowse link
G RAB19 RAB19, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:9,367,239...9,391,097
Ensembl chr18:9,364,451...9,384,083 		JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in IEA
IBA
ISS		 Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:76,837,673...76,868,156
Ensembl chr 3:76,837,430...76,869,778 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:28,632,065...28,658,958
Ensembl chr 7:28,632,082...28,658,952 		JBrowse link
G RAB33A RAB33A, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:106,708,402...106,723,803
Ensembl chr  X:106,712,398...106,723,404 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:87,545,106...87,570,545
Ensembl chr 8:87,545,116...87,570,545 		JBrowse link
G RAB43 RAB43, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr13:71,564,250...71,596,318
Ensembl chr13:71,562,350...71,596,249 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:71,777,422...71,886,758
Ensembl chr13:71,777,424...71,852,694 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IEA
IBA		 Ensembl
GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:77,593,204...77,649,551
Ensembl chr 4:77,594,324...77,649,548 		JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:120,193,657...120,213,625
Ensembl chr15:120,192,235...120,213,462 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:141,359,402...141,367,222
Ensembl chr 2:141,358,993...141,367,198 		JBrowse link
G STX12 syntaxin 12 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:84,918,827...84,960,235
Ensembl chr 6:84,918,678...84,960,720 		JBrowse link
G SYNPO2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 8:104,677,580...104,844,169
Ensembl chr 8:104,677,583...104,873,791 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:4,844,627...4,860,562
Ensembl chr 2:4,844,637...4,860,498 		JBrowse link
G TMEM41B transmembrane protein 41B involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:223,973...249,813
Ensembl chr 9:223,994...250,293 		JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:41,747,654...41,766,688
Ensembl chr 4:41,747,654...41,766,685 		JBrowse link
G TP53INP2 tumor protein p53 inducible nuclear protein 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr17:38,104,189...38,113,167
Ensembl chr17:38,104,200...38,113,166 		JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:24,602,749...24,628,263
Ensembl chr 2:24,602,804...24,626,072 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:257,051,421...257,066,911
Ensembl chr 1:257,054,228...257,066,909 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr10:31,275,916...31,317,521
Ensembl chr10:31,275,868...31,317,516 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:48,948,062...48,951,392
Ensembl chr  X:48,948,389...48,950,263 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:114,667,278...114,714,185
Ensembl chr 3:114,673,035...114,714,178 		JBrowse link
G UBXN2B UBX domain protein 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:74,405,876...74,437,650
Ensembl chr 4:74,405,902...74,437,615 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,698...23,448,136 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:59,806,904...59,878,398
Ensembl chr12:59,806,955...59,878,388 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:58,699,989...58,707,191
Ensembl chr 7:58,699,984...58,707,187 		JBrowse link
G VMP1 vacuole membrane protein 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 Ensembl chr12:35,933,173...36,065,956 JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:43,150,691...43,155,981
Ensembl chr  X:43,147,477...43,156,234 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:522,762...547,333
Ensembl chr12:522,829...549,156 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:11,715,332...11,752,009
Ensembl chr12:11,715,318...11,752,021 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:6,037,732...6,142,569
Ensembl chr 3:6,037,741...6,142,575 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:23,977,683...23,992,673
Ensembl chr 7:23,977,683...23,992,697 		JBrowse link
G FEZ1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:52,621,175...52,672,660
Ensembl chr 9:52,621,183...52,672,660 		JBrowse link
G FEZ2 fasciculation and elongation protein zeta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:103,566,214...103,612,855
Ensembl chr 3:103,566,228...103,615,769 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:71,800,337...71,945,828
Ensembl chr 5:71,800,225...71,945,828 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:23695157) MGI
GO_Central		 PMID:23695157 GO_REF:0000033 NCBI chr  X:122,286,904...122,379,302
Ensembl chr  X:122,286,916...122,379,299 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,402,781...18,404,411
Ensembl chr 3:18,402,935...18,511,087 		JBrowse link
G PHF23 PHD finger protein 23 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:52,590,801...52,595,208
Ensembl chr12:52,590,804...52,595,266 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,640 		JBrowse link
G SCFD1 sec1 family domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:68,694,579...68,851,055
Ensembl chr 7:68,712,773...68,851,008 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:100,880,843...100,900,942
Ensembl chr 4:100,880,937...100,905,993 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:60,435,276...60,443,525
Ensembl chr12:60,435,273...60,443,520 		JBrowse link
G TMEM39A transmembrane protein 39A involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:140,797,098...140,830,732
Ensembl chr13:140,797,205...140,831,277 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:7,261,819...7,282,614
Ensembl chr 2:7,262,031...7,282,347 		JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,654 		JBrowse link
G BECN1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chr12:20,041,914...20,054,249
Ensembl chr12:20,041,956...20,054,373 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:110,881,770...110,954,092
Ensembl chr 4:110,881,768...110,953,967 		JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:267,964,875...268,008,833
Ensembl chr 1:267,964,928...268,008,825 		JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) UniProt PMID:33783314 NCBI chr 7:114,571,624...114,574,052 JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:52,224,367...52,408,928
Ensembl chr10:52,224,389...52,408,922 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:23,317,113...23,345,661
Ensembl chr12:23,317,208...23,346,424 		JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:22,854,142...22,867,032
Ensembl chr 5:22,854,316...22,867,028 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:16,756,368...16,893,148
Ensembl chr15:16,763,990...16,816,754 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:9,734,766...9,828,330
Ensembl chr10:9,734,768...9,828,525 		JBrowse link
G RALB RAS like proto-oncogene B involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:31,064,341...31,118,437
Ensembl chr15:31,064,355...31,122,621 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:129,361,596...129,395,790
Ensembl chr 4:129,357,552...129,395,583 		JBrowse link
G SNX18 sorting nexin 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:33,776,964...33,801,391
Ensembl chr16:33,776,746...33,847,624 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:253,428,461...253,555,463
Ensembl chr 1:253,428,508...253,550,375 		JBrowse link
G SNX4 sorting nexin 4 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr13:134,824,028...134,903,765
Ensembl chr13:134,824,043...134,905,359 		JBrowse link
G SNX7 sorting nexin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:119,040,986...119,258,507
Ensembl chr 4:119,035,133...119,255,877 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:257,051,421...257,066,911
Ensembl chr 1:257,054,228...257,066,909 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chr14:23,423,693...23,448,130
Ensembl chr14:23,423,698...23,448,136 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:43,150,691...43,155,981
Ensembl chr  X:43,147,477...43,156,234 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:11,715,332...11,752,009
Ensembl chr12:11,715,318...11,752,021 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAVL1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chr 2:71,207,141...71,245,863
Ensembl chr 2:71,207,096...71,248,906 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,298...133,693,468 		JBrowse link
G ATG5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,396 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFIP2 ARF interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:3,250,011...3,254,916
Ensembl chr 9:3,249,908...3,266,686 		JBrowse link
G ATG13 autophagy related 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:15,856,859...15,916,122
Ensembl chr 2:15,856,860...15,916,109 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,298...133,693,468 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:140,223,903...140,245,590
Ensembl chr15:140,223,904...140,246,321 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:69,320,313...69,328,522
Ensembl chr 2:69,320,331...69,328,519 		JBrowse link
G ATG9A autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:121,254,355...121,265,564
Ensembl chr15:121,254,355...121,265,569 		JBrowse link
G ATG9B autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:6,200,246...6,208,988
Ensembl chr18:6,200,639...6,208,286 		JBrowse link
G LRBA LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr 8:77,970,087...78,680,307
Ensembl chr 8:77,970,558...78,680,250 		JBrowse link
G MFN2 mitofusin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:72,026,512...72,056,439
Ensembl chr 6:72,028,499...72,056,438 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:125,890,598...126,038,753
Ensembl chr 6:125,890,712...126,043,157 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:87,545,106...87,570,545
Ensembl chr 8:87,545,116...87,570,545 		JBrowse link
G STX17 syntaxin 17 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:241,657,463...241,785,270
Ensembl chr 1:241,657,506...241,765,783 		JBrowse link
G TRIM3 tripartite motif containing 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:3,256,915...3,281,846
Ensembl chr 9:3,272,798...3,282,366 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:43,150,691...43,155,981
Ensembl chr  X:43,147,477...43,156,234 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:522,762...547,333
Ensembl chr12:522,829...549,156 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:11,715,332...11,752,009
Ensembl chr12:11,715,318...11,752,021 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:24954904) GO_Central
Ensembl
MGI		 PMID:24954904 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:3,800,170...3,830,973
Ensembl chr 3:3,800,186...3,834,413 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:38,389,366...38,415,903
Ensembl chr10:38,389,331...38,415,901 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:45,699,833...45,967,350
Ensembl chr14:45,929,715...45,967,290 		JBrowse link
G EFNB1 ephrin B1 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr  X:54,947,339...54,961,403
Ensembl chr  X:54,948,342...54,973,629 		JBrowse link
G EPHB2 EPH receptor B2 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr 6:80,649,098...80,849,979
Ensembl chr 6:80,650,740...80,843,567 		JBrowse link
G IFT20 intraflagellar transport 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:44,609,586...44,616,685
Ensembl chr12:44,609,508...44,616,655 		JBrowse link
G IFT88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,025,613 		JBrowse link
G LOC110258247 TBC1 domain family member 14-like involved_in IBA GO_Central GO_REF:0000033
G MTMR3 myotubularin related protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:46,874,977...47,022,581
Ensembl chr14:46,875,050...47,023,487 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:71,286,989...71,412,913
Ensembl chr 6:71,286,989...71,412,888 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:111,372,148...111,468,720
Ensembl chr15:111,372,173...111,467,899 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) UniProt PMID:20545908 NCBI chr 2:6,110,438...6,116,443
Ensembl chr 2:6,102,354...6,116,221 		JBrowse link
G RNF186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chr 6:78,195,692...78,199,058
Ensembl chr 6:78,192,337...78,198,597 		JBrowse link
G RNF5 ring finger protein 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:24,215,493...24,217,983
Ensembl chr 7:24,215,704...24,217,971 		JBrowse link
G TBC1D12 TBC1 domain family member 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:105,806,384...105,919,986
Ensembl chr14:105,829,858...105,920,886 		JBrowse link
G TBC1D14 TBC1 domain family member 14 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:3,833,314...3,918,783
Ensembl chr 8:3,833,317...3,929,059 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:48,948,062...48,951,392
Ensembl chr  X:48,948,389...48,950,263 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:22186024 GO_REF:0000033 GO_REF:0000107 RGD:13442482 NCBI chr 6:75,618,317...75,638,591
Ensembl chr 6:75,618,319...75,638,591 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
G DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:74,732,130...74,771,404
Ensembl chr 6:74,732,169...74,774,311 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRGQ immunity related GTPase Q involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,433,858...50,442,106
Ensembl chr 6:50,433,862...50,445,575 		JBrowse link
G RETREG1 reticulophagy regulator 1 involved_in IEA GOC GO_REF:0000108 NCBI chr16:5,726,493...5,879,461
Ensembl chr16:5,726,494...5,879,714 		JBrowse link
G RETREG2 reticulophagy regulator family member 2 involved_in IEA GOC GO_REF:0000108 NCBI chr15:121,212,370...121,218,796
Ensembl chr15:121,212,881...121,218,812 		JBrowse link
G RETREG3 reticulophagy regulator family member 3 involved_in IEA GOC GO_REF:0000108 NCBI chr12:20,220,993...20,243,299
Ensembl chr12:20,179,078...20,243,293 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:6,037,732...6,142,569
Ensembl chr 3:6,037,741...6,142,575 		JBrowse link
G STBD1 starch binding domain 1 involved_in ISO (PMID:20810658)
(PMID:27358407)		 MGI PMID:20810658 PMID:27358407 NCBI chr 8:71,982,987...71,987,880 JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18944
    cellular process 18487
      process utilizing autophagic mechanism 521
        autophagy 521
          macroautophagy 323
            autophagosome organization 131
              autophagosome assembly + 122
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 18944
    cellular process 18487
      cellular component organization or biogenesis 7420
        cellular component organization 7214
          organelle organization 3523
            vacuole organization 227
              autophagosome organization 131
                autophagosome assembly + 122
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root