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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
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Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization

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autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) ParkinsonsUK-UCL PMID:22186024 NCBI chrNW_004624764:2,614,541...2,631,972
Ensembl chrNW_004624764:2,614,827...2,631,793 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chrNW_004624885:2,315,371...2,321,327
Ensembl chrNW_004624885:2,315,142...2,321,327 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004624766:8,698,836...8,834,928
Ensembl chrNW_004624766:8,701,642...8,776,578 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004624807:6,543,665...6,612,833
Ensembl chrNW_004624807:6,554,926...6,612,831 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004624804:11,569,024...11,672,037
Ensembl chrNW_004624804:11,569,150...11,670,373 		JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004624734:33,175,080...33,240,484
Ensembl chrNW_004624734:33,175,041...33,238,664 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,967,002...2,160,102
Ensembl chrNW_004624767:1,966,898...2,160,465 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO (PMID:29180427) UniProt PMID:29180427 NCBI chrNW_004624740:16,883,725...16,887,678
Ensembl chrNW_004624740:16,883,828...16,887,685 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO (PMID:30930081) MGI PMID:30930081 NCBI chrNW_004624740:28,509,979...28,527,813
Ensembl chrNW_004624740:28,509,230...28,527,519 		JBrowse link
G Atg10 autophagy related 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:2,381,131...2,663,640
Ensembl chrNW_004624743:2,381,038...2,649,322 		JBrowse link
G Atg101 autophagy related 101 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624816:255,443...261,636
Ensembl chrNW_004624816:255,432...262,151 		JBrowse link
G Atg12 autophagy related 12 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624733:6,046,073...6,056,321
Ensembl chrNW_004624733:6,045,432...6,060,784 		JBrowse link
G Atg13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19211835) MGI
InterPro		 PMID:19211835 GO_REF:0000002 NCBI chrNW_004624767:1,924,672...1,953,868 JBrowse link
G Atg14 autophagy related 14 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624884:165,443...220,525 JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Atg16l2 autophagy related 16 like 2 NOT|involved_in ISO
IEA		 (PMID:22082872) UniProt
InterPro		 PMID:22082872 GO_REF:0000002 NCBI chrNW_004624817:4,123,963...4,153,720
Ensembl chrNW_004624817:4,140,543...4,147,597 		JBrowse link
G Atg2a autophagy related 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:21,480,320...21,507,934
Ensembl chrNW_004624767:21,488,404...21,507,528 		JBrowse link
G Atg2b autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624734:7,015,356...7,097,392
Ensembl chrNW_004624734:7,015,672...7,096,348 		JBrowse link
G Atg3 autophagy related 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21220506) MGI
TreeGrafter		 PMID:21220506 GO_REF:0000118 NCBI chrNW_004624731:35,978,595...36,004,900 JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624803:8,336,123...8,407,354
Ensembl chrNW_004624803:8,337,042...8,407,222 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624847:5,605,818...5,629,729
Ensembl chrNW_004624847:5,605,844...5,629,891 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624742:31,061,869...31,130,786
Ensembl chrNW_004624742:31,060,376...31,127,740 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:2,617,853...2,624,756
Ensembl chrNW_004624828:2,617,773...2,624,756 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23704209) RGD
MGI
Ensembl		 PMID:16420522 PMID:23704209 GO_REF:0000107 RGD:1643189 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Atg7 autophagy related 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23704209) MGI
TreeGrafter		 PMID:23704209 GO_REF:0000118 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Atg9a autophagy related 9A involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chrNW_004624823:5,787,525...5,797,536
Ensembl chrNW_004624823:5,787,601...5,797,534 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) MGI PMID:15755735 NCBI chrNW_004624800:5,589,366...5,600,253
Ensembl chrNW_004624800:5,591,297...5,598,739 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004624747:21,509,360...21,567,424
Ensembl chrNW_004624747:21,509,366...21,568,098 		JBrowse link
G Bag3 BAG cochaperone 3 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004624737:27,171,402...27,195,008
Ensembl chrNW_004624737:27,171,402...27,195,004 		JBrowse link
G Becn1 beclin 1 involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl
UniProt		 PMID:16420522 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1643189 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:14,661,058...14,671,116
Ensembl chrNW_004624767:14,660,936...14,671,671 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:4,873,473...4,950,868
Ensembl chrNW_004624772:4,873,468...4,953,655 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624786:6,323,866...6,324,845
Ensembl chrNW_004624786:6,323,913...6,324,845 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:24430976) MGI PMID:24430976 NCBI chrNW_004624753:8,715,898...8,805,728
Ensembl chrNW_004624753:8,715,898...8,804,194 		JBrowse link
G Irgm immunity related GTPase M involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G LOC101698514 interferon-inducible GTPase 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624774:10,075,918...10,146,439 JBrowse link
G LOC101708940 T-cell-specific guanine nucleotide triphosphate-binding protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:41,275,218...41,309,185 JBrowse link
G LOC101712848 serine/threonine-protein kinase ULK2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624849:6,353,989...6,447,986
Ensembl chrNW_004624849:6,354,678...6,448,026 		JBrowse link
G LOC101713661 beclin-2-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:8,779,379...8,780,647 JBrowse link
G LOC101713718 autophagy-related protein 13-like involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624730:44,641,182...44,642,543 JBrowse link
G LOC101721047 RB1-inducible coiled-coil protein 1-like involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624784:5,426,159...5,447,188 JBrowse link
G LOC106007613 T-cell-specific guanine nucleotide triphosphate-binding protein 1-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624733:41,267,713...41,274,617 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624842:4,800,533...4,802,235
Ensembl chrNW_004624842:4,800,539...4,802,094 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004624746:3,084,418...3,094,250
Ensembl chrNW_004624746:3,084,392...3,094,250 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004624923:952,782...1,062,391 JBrowse link
G Nsfl1c NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624741:2,746,853...2,774,038
Ensembl chrNW_004624741:2,748,796...2,774,119 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004624734:125,190...184,690
Ensembl chrNW_004624734:125,190...184,756 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:24098492) RGD
TreeGrafter
MGI		 PMID:12453151 PMID:24098492 GO_REF:0000118 RGD:2303129 NCBI chrNW_004624779:16,307,875...16,435,567
Ensembl chrNW_004624779:16,307,800...16,434,169 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:15452145) MGI PMID:15452145 NCBI chrNW_004624734:28,200,358...28,272,684
Ensembl chrNW_004624734:28,200,140...28,272,743 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:8,420,336...8,448,478
Ensembl chrNW_004624762:8,420,305...8,449,647 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624753:18,988,842...19,014,799 JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624777:19,730,784...19,744,423
Ensembl chrNW_004624777:19,730,768...19,747,292 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) GO_Central PMID:19956673 NCBI chrNW_004625042:56,509...112,519
Ensembl chrNW_004625042:56,517...112,612 		JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624735:2,778,191...2,860,762 JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:6,908,113...6,927,724
Ensembl chrNW_004624823:6,908,636...6,925,863 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624743:32,277,197...32,283,346
Ensembl chrNW_004624743:32,273,385...32,283,235 		JBrowse link
G Stx12 syntaxin 12 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624764:11,620,527...11,665,829
Ensembl chrNW_004624764:11,620,439...11,664,410 		JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chrNW_004624867:5,697,192...5,895,957 JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within ISO (PMID:23908015) MGI PMID:23908015 NCBI chrNW_004624767:18,809,626...18,820,360
Ensembl chrNW_004624767:18,809,689...18,820,390 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624766:1,416,819...1,450,942
Ensembl chrNW_004624766:1,415,014...1,450,916 		JBrowse link
G Tp53inp1 tumor protein p53 inducible nuclear protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624763:2,278,751...2,297,149
Ensembl chrNW_004624763:2,277,794...2,296,423 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624842:4,666,638...4,675,576
Ensembl chrNW_004624842:4,666,640...4,675,556 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:10,729,766...10,803,253
Ensembl chrNW_004624767:10,729,413...10,748,455 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:18,577,764...18,600,869
Ensembl chrNW_004624760:18,585,279...18,599,659 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624809:6,434,842...6,487,442
Ensembl chrNW_004624809:6,436,658...6,487,251 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126 		JBrowse link
G Ubxn2a UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624738:6,313,925...6,341,999
Ensembl chrNW_004624738:6,323,404...6,341,996 		JBrowse link
G Ubxn2b UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:33,676,900...33,725,388
Ensembl chrNW_004624744:33,696,129...33,725,383 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
G Ulk3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624894:53,677...59,807
Ensembl chrNW_004624894:54,683...59,716 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO (PMID:30093494), (PMID:30933966)
(PMID:28890335)		 UniProt PMID:28890335 PMID:30093494 PMID:30933966 NCBI chrNW_004624871:1,519,662...1,626,040
Ensembl chrNW_004624871:1,519,764...1,625,034 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004624893:845,689...852,221
Ensembl chrNW_004624893:845,701...852,244 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004624801:11,322,159...11,351,720
Ensembl chrNW_004624801:11,318,656...11,351,839 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004624870:3,487,814...3,518,206
Ensembl chrNW_004624870:3,486,375...3,518,193 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISO (PMID:20505359), (PMID:28561066)
(PMID:28890335)		 UniProt PMID:20505359 PMID:28561066 PMID:28890335 NCBI chrNW_004624740:28,306,655...28,346,430
Ensembl chrNW_004624740:28,306,052...28,346,508 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004624740:32,480,138...32,615,436
Ensembl chrNW_004624740:32,483,092...32,615,260 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004624754:24,354,271...24,368,319
Ensembl chrNW_004624754:24,354,284...24,368,638 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624927:1,470,218...1,512,780
Ensembl chrNW_004624927:1,469,025...1,512,790 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004624738:18,217,238...18,260,096
Ensembl chrNW_004624738:18,216,715...18,260,729 		JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:23916833) ParkinsonsUK-UCL PMID:23916833 NCBI chrNW_004624778:106,594...279,325
Ensembl chrNW_004624778:108,761...279,230 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23695157) MGI
TreeGrafter		 PMID:23695157 GO_REF:0000118 NCBI chrNW_004624923:952,782...1,062,391 JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:20181828) UniProt PMID:20181828 NCBI chrNW_004624782:13,042,938...13,044,298
Ensembl chrNW_004624782:13,042,939...13,044,267 		JBrowse link
G Phf23 PHD finger protein 23 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:9,852,151...9,856,541
Ensembl chrNW_004624786:9,852,366...9,856,524 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004624764:5,656,207...5,671,260
Ensembl chrNW_004624764:5,656,229...5,671,260 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004624820:1,614,884...1,714,020 JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004624772:15,800,793...15,833,453
Ensembl chrNW_004624772:15,803,369...15,833,968 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531 NCBI chrNW_004624849:3,147,251...3,159,358
Ensembl chrNW_004624849:3,149,121...3,159,273 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:28,701,873...28,773,697
Ensembl chrNW_004624731:28,740,048...28,773,701 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) UniProt PMID:30952800 PMID:31271352 NCBI chrNW_004624767:21,480,320...21,507,934
Ensembl chrNW_004624767:21,488,404...21,507,528 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004624943:231,978...480,933
Ensembl chrNW_004624943:232,618...481,290 		JBrowse link
G Becn1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chrNW_004624795:1,386,154...1,406,314
Ensembl chrNW_004624795:1,385,756...1,405,714 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chrNW_004624772:4,873,473...4,950,868
Ensembl chrNW_004624772:4,873,468...4,953,655 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:7,997,803...8,044,758
Ensembl chrNW_004624760:7,998,107...8,032,972 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624796:5,963,005...6,113,081
Ensembl chrNW_004624796:5,962,999...6,113,087 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624795:3,907,891...3,931,246
Ensembl chrNW_004624795:3,908,037...3,931,430 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624802:10,359,891...10,370,931
Ensembl chrNW_004624802:10,359,888...10,370,909 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004624732:34,450,616...34,593,675
Ensembl chrNW_004624732:34,450,630...34,593,675 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004624835:3,764,480...3,826,271
Ensembl chrNW_004624835:3,765,114...3,826,155 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO (PMID:24056301) UniProt PMID:24056301 NCBI chrNW_004624732:24,804,794...24,841,744
Ensembl chrNW_004624732:24,803,311...24,821,038 		JBrowse link
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 involved_in ISO (PMID:21068542) UniProt PMID:21068542 NCBI chrNW_004624742:10,845,333...10,883,705 JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) UniProt PMID:29437695 NCBI chrNW_004624759:4,851,014...4,879,365
Ensembl chrNW_004624759:4,850,555...4,879,478 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chrNW_004624760:22,138,646...22,261,392
Ensembl chrNW_004624760:22,144,510...22,261,296 		JBrowse link
G Snx4 sorting nexin 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:1,522,467...1,585,793
Ensembl chrNW_004624731:1,522,098...1,586,066 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chrNW_004624857:1,253,148...1,365,322
Ensembl chrNW_004624857:1,252,995...1,365,308 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:18,577,764...18,600,869
Ensembl chrNW_004624760:18,585,279...18,599,659 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chrNW_004624747:27,680,994...27,697,342
Ensembl chrNW_004624747:27,681,033...27,695,966 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chrNW_004624893:845,689...852,221
Ensembl chrNW_004624893:845,701...852,244 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chrNW_004624870:3,487,814...3,518,206
Ensembl chrNW_004624870:3,486,375...3,518,193 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004624828:913,001...948,826
Ensembl chrNW_004624828:914,141...948,831 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004624780:15,987,483...16,124,158
Ensembl chrNW_004624780:15,987,397...16,124,151 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chrNW_004624733:41,241,488...41,248,162 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004624740:28,306,655...28,346,430
Ensembl chrNW_004624740:28,306,052...28,346,508 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624817:7,993,830...7,998,729
Ensembl chrNW_004624817:7,991,572...7,997,963 		JBrowse link
G Atg13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:1,924,672...1,953,868 JBrowse link
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:24954904)
(PMID:32960676)		 MGI
UniProt		 PMID:24954904 PMID:32960676 NCBI chrNW_004624843:5,797,725...5,838,768
Ensembl chrNW_004624843:5,805,069...5,838,741 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624847:5,605,818...5,629,729
Ensembl chrNW_004624847:5,605,844...5,629,891 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:2,617,853...2,624,756
Ensembl chrNW_004624828:2,617,773...2,624,756 		JBrowse link
G Atg9a autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624823:5,787,525...5,797,536
Ensembl chrNW_004624823:5,787,601...5,797,534 		JBrowse link
G Atg9b autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624800:5,589,366...5,600,253
Ensembl chrNW_004624800:5,591,297...5,598,739 		JBrowse link
G LOC101713718 autophagy-related protein 13-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:44,641,182...44,642,543 JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004624858:1,797,123...2,471,017
Ensembl chrNW_004624858:1,797,123...2,471,867 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004624818:1,041,371...1,065,061
Ensembl chrNW_004624818:1,041,369...1,065,023 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004624734:125,190...184,690
Ensembl chrNW_004624734:125,190...184,756 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004624779:16,307,875...16,435,567
Ensembl chrNW_004624779:16,307,800...16,434,169 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624777:19,730,784...19,744,423
Ensembl chrNW_004624777:19,730,768...19,747,292 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004624825:967,493...1,066,513
Ensembl chrNW_004624825:972,755...1,066,597 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within
involved_in		 ISO (PMID:24954904)
(PMID:28561066)		 MGI
UniProt		 PMID:24954904 PMID:28561066 NCBI chrNW_004624740:28,306,655...28,346,430
Ensembl chrNW_004624740:28,306,052...28,346,508 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISO (PMID:27334615) UniProt PMID:27334615 NCBI chrNW_004624736:31,737,606...31,787,900
Ensembl chrNW_004624736:31,751,268...31,788,253 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624747:5,035,045...5,072,555
Ensembl chrNW_004624747:5,035,200...5,070,332 		JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chrNW_004624891:1,394,948...1,407,898
Ensembl chrNW_004624891:1,394,852...1,407,959 		JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004624764:7,421,818...7,599,800
Ensembl chrNW_004624764:7,421,862...7,593,482 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004624786:928,123...939,515 JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Mtmr3 myotubularin related protein 3 involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624747:6,193,859...6,335,897
Ensembl chrNW_004624747:6,278,779...6,338,438 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO (PMID:23524951) UniProt PMID:23524951 NCBI chrNW_004624818:1,570,155...1,698,264
Ensembl chrNW_004624818:1,570,276...1,698,259 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004624765:7,684,770...7,806,381
Ensembl chrNW_004624765:7,681,875...7,790,704 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624767:20,091,120...20,098,855
Ensembl chrNW_004624767:20,090,441...20,098,913 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:4,897,234...4,898,470 JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO (PMID:23093945) MGI PMID:23093945 NCBI chrNW_004624754:24,141,072...24,143,460
Ensembl chrNW_004624754:24,141,072...24,143,489 		JBrowse link
G Tbc1d14 TBC1 domain family member 14 involved_in ISO (PMID:22613832) BHF-UCL PMID:22613832 NCBI chrNW_004624755:23,164,315...23,255,023
Ensembl chrNW_004624755:23,164,288...23,252,771 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) UniProt PMID:20529957 NCBI chrNW_004624910:1,547,942...1,551,323
Ensembl chrNW_004624910:1,548,249...1,550,126 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO
IEA		 RGD
TreeGrafter		 PMID:22186024 GO_REF:0000118 RGD:13442482 NCBI chrNW_004624764:2,614,541...2,631,972
Ensembl chrNW_004624764:2,614,827...2,631,793 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624764:1,792,487...1,844,138
Ensembl chrNW_004624764:1,792,373...1,840,816 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgq immunity related GTPase Q involved_in ISO (PMID:39481378) UniProt PMID:39481378 NCBI chrNW_004624907:1,121,208...1,129,714
Ensembl chrNW_004624907:1,125,465...1,129,088 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004624740:32,480,138...32,615,436
Ensembl chrNW_004624740:32,483,092...32,615,260 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO (PMID:20810658)
(PMID:27358407)		 MGI PMID:20810658 PMID:27358407 NCBI chrNW_004624757:14,629,607...14,634,274
Ensembl chrNW_004624757:14,631,455...14,634,147 		JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) UniProt PMID:23023224 NCBI chrNW_004624750:359,130...379,454
Ensembl chrNW_004624750:357,222...379,356 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17650
    cellular process 17226
      process utilizing autophagic mechanism 516
        autophagy 516
          macroautophagy 320
            autophagosome organization 122
              autophagosome assembly + 113
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 17650
    cellular process 17226
      cellular component organization or biogenesis 7005
        cellular component organization 6802
          organelle organization 3445
            vacuole organization 219
              autophagosome organization 122
                autophagosome assembly + 113
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root