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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
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Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization


show annotations for term's descendants           Sort by:
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in IDA (PMID:22186024) ParkinsonsUK-UCL PMID:22186024 NCBI chr 1:16,985,958...17,011,928
Ensembl chr 1:16,985,958...17,011,928 		JBrowse link
G GBA1 glucosylceramidase beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23707074) Ensembl
ARUK-UCL		 PMID:23707074 GO_REF:0000107 NCBI chr 1:155,234,452...155,244,627
Ensembl chr 1:155,234,452...155,244,699 		JBrowse link
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chr11:17,086,575...17,207,986
Ensembl chr11:17,077,730...17,207,986 		JBrowse link
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24098492) Ensembl
MGI		 PMID:24098492 GO_REF:0000107 NCBI chr 1:204,422,633...204,494,805
Ensembl chr 1:204,422,628...204,494,805 		JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within IDA (PMID:25365221) MGI PMID:25365221 NCBI chr15:44,562,696...44,663,662
Ensembl chr15:44,554,818...44,663,688 		JBrowse link
G ZFYVE26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within IDA (PMID:25365221) MGI PMID:25365221 NCBI chr14:67,728,892...67,816,590
Ensembl chr14:67,727,374...67,816,590 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IMP
IBA
IDA		 (PMID:25215947)
(PMID:20921139), (PMID:23524951)		 ParkinsonsUK-UCL
GO_Central
UniProt		 PMID:20921139 PMID:23524951 PMID:25215947 GO_REF:0000033 NCBI chr11:46,396,412...46,594,023
Ensembl chr11:46,396,414...46,594,125 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IMP (PMID:29180427) UniProt PMID:29180427 NCBI chr 7:100,100,794...100,109,039
Ensembl chr 7:100,100,858...100,110,345 		JBrowse link
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:30930081) MGI
Ensembl		 PMID:30930081 GO_REF:0000107 NCBI chr 7:4,775,623...4,794,397
Ensembl chr 7:4,775,615...4,794,397 		JBrowse link
G ATG10 autophagy related 10 involved_in IDA
IBA		 (PMID:16963840) UniProt
GO_Central		 PMID:16963840 GO_REF:0000033 NCBI chr 5:81,972,023...82,256,133
Ensembl chr 5:81,972,023...82,276,857 		JBrowse link
G ATG101 autophagy related 101 involved_in IDA
IBA
IMP
IEA		 (PMID:19225151)
(PMID:19597335)		 ComplexPortal
GO_Central
UniProt
Ensembl		 PMID:19225151 PMID:19597335 GO_REF:0000033 GO_REF:0000107 NCBI chr12:52,065,300...52,077,495
Ensembl chr12:52,069,246...52,077,495 		JBrowse link
G ATG12 autophagy related 12 involved_in IEA
IBA
ISO
ISS		 Ensembl
GO_Central
ComplexPortal
UniProt
InterPro		 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000114 NCBI chr 5:115,828,200...115,841,565
Ensembl chr 5:115,828,200...115,841,837 		JBrowse link
G ATG13 autophagy related 13 involved_in
acts_upstream_of_or_within		 IDA
IEA
IMP		 (PMID:19225151)
(PMID:19211835)		 ComplexPortal
Ensembl
UniProt
InterPro
MGI		 PMID:19211835 PMID:19225151 GO_REF:0000002 GO_REF:0000107 NCBI chr11:46,617,553...46,674,518
Ensembl chr11:46,617,527...46,674,818 		JBrowse link
G ATG14 autophagy related 14 involved_in IMP
IBA
IDA		 (PMID:19270696)
(PMID:20713597)		 UniProt
GO_Central		 PMID:19270696 PMID:20713597 GO_REF:0000033 NCBI chr14:55,366,391...55,411,830
Ensembl chr14:55,366,391...55,411,830 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in NAS
IBA
IMP
ISO
IEA		 (PMID:15620219)
(PMID:30778222)		 UniProt
GO_Central
ComplexPortal
InterPro
Ensembl		 PMID:15620219 PMID:30778222 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000114 NCBI chr 2:233,251,673...233,295,669
Ensembl chr 2:233,210,051...233,295,674 		JBrowse link
G ATG16L2 autophagy related 16 like 2 NOT|involved_in ISS
ISO
IEA		 UniProt
ComplexPortal
InterPro		 GO_REF:0000002 GO_REF:0000024 GO_REF:0000114 NCBI chr11:72,814,411...72,843,740
Ensembl chr11:72,814,406...72,843,674 		JBrowse link
G ATG2A autophagy related 2A involved_in IMP
IBA		 (PMID:28561066) UniProt
GO_Central		 PMID:28561066 GO_REF:0000033 NCBI chr11:64,894,546...64,917,209
Ensembl chr11:64,894,546...64,917,209 		JBrowse link
G ATG2B autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:96,279,195...96,363,341
Ensembl chr14:96,279,195...96,363,341 		JBrowse link
G ATG3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA
IMP
ISS		 (PMID:21220506)
(PMID:33446636)		 Ensembl
MGI
GO_Central
UniProt		 PMID:21220506 PMID:33446636 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:112,532,510...112,561,962
Ensembl chr 3:112,532,510...112,562,046 		JBrowse link
G ATG4A autophagy related 4A cysteine peptidase involved_in IDA
IBA		 (PMID:21177865) UniProt
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr  X:108,088,829...108,154,671
Ensembl chr  X:108,091,668...108,154,671 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IDA
IBA		 (PMID:21177865) UniProt
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr 2:241,637,693...241,673,857
Ensembl chr 2:241,637,213...241,673,857 		JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IDA
IBA		 (PMID:21177865) UniProt
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr 1:62,784,132...62,865,516
Ensembl chr 1:62,784,132...62,865,516 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IDA
IBA		 (PMID:21177865) UniProt
GO_Central		 PMID:21177865 GO_REF:0000033 NCBI chr19:10,543,904...10,553,418
Ensembl chr19:10,543,895...10,553,418 		JBrowse link
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within		 ISO
IBA
IDA
IEA
ISS		 (PMID:23704209)
(PMID:23202584)		 RGD
GO_Central
MGI
UniProt
ComplexPortal
Ensembl		 PMID:16420522 PMID:23202584 PMID:23704209 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000114 RGD:1643189 NCBI chr 6:106,184,476...106,325,760
Ensembl chr 6:106,045,423...106,325,791 		JBrowse link
G ATG7 autophagy related 7 involved_in
acts_upstream_of_or_within		 IMP
IBA
ISO		 (PMID:22170151)
(PMID:23704209)		 UniProt
GO_Central
MGI		 PMID:22170151 PMID:23704209 GO_REF:0000033 NCBI chr 3:11,272,397...11,576,353
Ensembl chr 3:11,272,309...11,557,665 		JBrowse link
G ATG9A autophagy related 9A acts_upstream_of_or_within
involved_in		 IMP
IDA		 (PMID:15755735), (PMID:22456507)
(PMID:29437695), (PMID:32513819), (PMID:33468622)
(PMID:29180427)		 MGI
UniProt		 PMID:15755735 PMID:22456507 PMID:29180427 PMID:29437695 PMID:32513819 More... NCBI chr 2:219,219,380...219,229,636
Ensembl chr 2:219,219,380...219,229,717 		JBrowse link
G ATG9B autophagy related 9B acts_upstream_of_or_within IDA (PMID:15755735) MGI PMID:15755735 NCBI chr 7:151,012,209...151,024,499
Ensembl chr 7:151,012,209...151,024,499 		JBrowse link
G ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in IDA
IBA		 (PMID:28890335) UniProt
GO_Central		 PMID:28890335 GO_REF:0000033 NCBI chr12:110,280,616...110,351,093
Ensembl chr12:110,280,756...110,351,093 		JBrowse link
G BECN1 beclin 1 involved_in ISO
IBA
IDA
IEA
ISS		 (PMID:25891078) RGD
GO_Central
UniProt
Ensembl		 PMID:16420522 PMID:25891078 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 RGD:1643189 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G BECN2 beclin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:241,957,767...241,959,062
Ensembl chr 1:241,957,767...241,959,062 		JBrowse link
G CTSD cathepsin D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15452145) Ensembl
MGI		 PMID:15452145 GO_REF:0000107 NCBI chr11:1,752,755...1,763,927
Ensembl chr11:1,752,752...1,764,573 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IMP
IBA		 (PMID:21072319) BHF-UCL
GO_Central		 PMID:21072319 GO_REF:0000033 NCBI chr 1:109,114,115...109,206,781
Ensembl chr 1:109,113,679...109,206,781 		JBrowse link
G EMC6 ER membrane protein complex subunit 6 involved_in IMP
IBA		 (PMID:23182941) UniProt
GO_Central		 PMID:23182941 GO_REF:0000033 NCBI chr17:3,668,812...3,669,665
Ensembl chr17:3,668,812...3,669,668 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24430976) Ensembl
MGI		 PMID:24430976 GO_REF:0000107 NCBI chr 6:145,383,353...145,736,023
Ensembl chr 6:145,382,535...145,736,023 		JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:7,240,008...7,242,449
Ensembl chr17:7,240,008...7,242,449 		JBrowse link
G GABARAPL1 GABA type A receptor associated protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:10,212,877...10,223,128
Ensembl chr12:10,212,458...10,223,128 		JBrowse link
G GABARAPL2 GABA type A receptor associated protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:75,566,379...75,577,881
Ensembl chr16:75,566,375...75,577,881 		JBrowse link
G GABARAPL3 GABA type A receptor associated protein like 3 (pseudogene) involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:90,346,527...90,349,447
Ensembl chr15:90,348,844...90,349,197 		JBrowse link
G IRGM immunity related GTPase M involved_in IMP
IBA		 (PMID:16888103) UniProt
GO_Central		 PMID:16888103 GO_REF:0000033 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736 		JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha involved_in ISS
IBA
IMP
IEA		 (PMID:24290141) UniProt
GO_Central
Ensembl		 PMID:24290141 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr20:34,546,844...34,560,345
Ensembl chr20:34,546,854...34,560,345 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in IDA
IBA		 (PMID:37943659) UniProt
GO_Central		 PMID:37943659 GO_REF:0000033 NCBI chr16:87,392,336...87,404,774
Ensembl chr16:87,383,953...87,404,779 		JBrowse link
G MAP1LC3B2 microtubule associated protein 1 light chain 3 beta 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:116,559,381...116,576,606
Ensembl chr12:116,548,105...116,576,606 		JBrowse link
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:241,995,490...242,001,393
Ensembl chr 1:241,995,490...241,999,098 		JBrowse link
G MTM1 myotubularin 1 involved_in
acts_upstream_of		 IEA
ISO		 (PMID:23695157) Ensembl
MGI		 PMID:23695157 GO_REF:0000107 NCBI chr  X:150,562,653...150,673,143
Ensembl chr  X:150,568,417...150,673,143 		JBrowse link
G NSFL1C NSFL1 cofactor involved_in IBA GO_Central GO_REF:0000033 NCBI chr20:1,442,166...1,466,849
Ensembl chr20:1,442,162...1,473,842 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IDA (PMID:23455425) MGI PMID:23455425 NCBI chr14:105,300,774...105,398,147
Ensembl chr14:105,300,563...105,398,147 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA
IDA		 (PMID:24098492)
(PMID:33637724)		 RGD
MGI
GO_Central
Ensembl
UniProt		 PMID:12453151 PMID:24098492 PMID:33637724 GO_REF:0000033 GO_REF:0000107 RGD:2303129 NCBI chr18:41,955,234...42,087,830
Ensembl chr18:41,955,234...42,087,830 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15452145) Ensembl
MGI		 PMID:15452145 GO_REF:0000107 NCBI chr14:73,136,417...73,223,691
Ensembl chr14:73,136,418...73,223,691 		JBrowse link
G RAB19 RAB19, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:140,404,058...140,427,974
Ensembl chr 7:140,404,058...140,427,974 		JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in IMP
IBA		 (PMID:22939626) UniProt
GO_Central		 PMID:22939626 GO_REF:0000033 NCBI chr 2:65,086,854...65,130,106
Ensembl chr 2:65,070,696...65,130,331 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:66,268,639...66,277,492
Ensembl chr11:66,268,590...66,277,492 		JBrowse link
G RAB1C RAB1C, member RAS oncogene family (pseudogene) involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:37,636,488...37,637,334
Ensembl chr 9:37,636,688...37,637,293 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in IMP
IBA		 (PMID:22452336) UniProt
GO_Central		 PMID:22452336 GO_REF:0000033 NCBI chr 6:57,186,992...57,222,307
Ensembl chr 6:57,186,992...57,222,307 		JBrowse link
G RAB33A RAB33A, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:130,110,623...130,184,870
Ensembl chr  X:130,171,962...130,184,870 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:139,438,376...139,476,609
Ensembl chr 4:139,453,232...139,476,609 		JBrowse link
G RAB43 RAB43, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:129,087,569...129,122,150
Ensembl chr 3:129,087,569...129,122,801 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IMP (PMID:19956673) GO_Central PMID:19956673 NCBI chr 3:128,726,183...128,814,798
Ensembl chr 3:128,693,669...128,825,942 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IEA
IBA
IDA		 (PMID:19225151), (PMID:23392225), (PMID:28890335) Ensembl
GO_Central
ComplexPortal
InterPro		 PMID:19225151 PMID:23392225 PMID:28890335 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:52,622,458...52,714,435
Ensembl chr 8:52,622,458...52,745,843 		JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IDA
IBA		 (PMID:26416964) UniProt
GO_Central		 PMID:26416964 GO_REF:0000033 NCBI chr 2:218,034,934...218,090,652
Ensembl chr 2:218,034,960...218,090,584 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in IEA
IBA
IDA		 (PMID:30568238), (PMID:30842662), (PMID:37535724) Ensembl
GO_Central
UniProt		 PMID:30568238 PMID:30842662 PMID:37535724 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:139,475,533...139,482,758
Ensembl chr 5:139,475,533...139,482,935 		JBrowse link
G STX12 syntaxin 12 involved_in IMP
IBA		 (PMID:24095276) ParkinsonsUK-UCL
GO_Central		 PMID:24095276 GO_REF:0000033 NCBI chr 1:27,773,219...27,824,443
Ensembl chr 1:27,773,219...27,824,443 		JBrowse link
G SYNPO2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 4:118,850,681...119,061,247
Ensembl chr 4:118,850,688...119,061,247 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23908015) Ensembl
MGI		 PMID:23908015 GO_REF:0000107 NCBI chr11:68,039,025...68,053,762
Ensembl chr11:68,039,025...68,050,895 		JBrowse link
G TMEM41B transmembrane protein 41B involved_in IMP
IBA		 (PMID:30093494), (PMID:30126924), (PMID:30933966) UniProt
GO_Central		 PMID:30093494 PMID:30126924 PMID:30933966 GO_REF:0000033 NCBI chr11:9,280,654...9,314,593
Ensembl chr11:9,280,654...9,314,636 		JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:94,925,972...94,949,378
Ensembl chr 8:94,925,972...94,949,378 		JBrowse link
G TP53INP2 tumor protein p53 inducible nuclear protein 2 involved_in IDA
IBA		 (PMID:19056683) GO_Central PMID:19056683 GO_REF:0000033 NCBI chr20:34,704,344...34,713,436
Ensembl chr20:34,704,339...34,713,439 		JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in IDA (PMID:23524951) UniProt PMID:23524951 NCBI chr11:36,483,769...36,510,272
Ensembl chr11:36,483,769...36,510,272 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IDA (PMID:37943659) UniProt PMID:37943659 NCBI chr 9:116,687,305...116,701,299
Ensembl chr 9:116,687,305...116,701,300 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IMP
IBA		 (PMID:20529957) GO_Central PMID:20529957 GO_REF:0000033 NCBI chr 9:83,659,968...83,707,958
Ensembl chr 9:83,659,968...83,707,958 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:56,563,627...56,567,868
Ensembl chr  X:56,563,627...56,567,868 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:23,927,278...24,004,909
Ensembl chr 2:23,927,285...24,004,909 		JBrowse link
G UBXN2B UBX domain protein 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:58,411,361...58,451,501
Ensembl chr 8:58,411,359...58,451,501 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IDA
IBA		 (PMID:19225151), (PMID:28890335) UniProt
GO_Central		 PMID:19225151 PMID:28890335 GO_REF:0000033 NCBI chr12:131,894,622...131,923,150
Ensembl chr12:131,894,622...131,923,150 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:19,770,830...19,867,936
Ensembl chr17:19,770,829...19,867,936 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:74,836,118...74,843,156
Ensembl chr15:74,836,118...74,843,346 		JBrowse link
G VMP1 vacuole membrane protein 1 involved_in IDA
IBA
IMP		 (PMID:28890335)
(PMID:30093494), (PMID:30933966)		 UniProt
GO_Central		 PMID:28890335 PMID:30093494 PMID:30933966 GO_REF:0000033 NCBI chr17:59,707,654...59,842,255
Ensembl chr17:59,707,192...59,842,255 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IMP (PMID:28561066) UniProt PMID:28561066 NCBI chr  X:49,074,442...49,101,178
Ensembl chr  X:49,074,433...49,101,170 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IMP (PMID:28561066) UniProt PMID:28561066 NCBI chr17:82,614,562...82,648,444
Ensembl chr17:82,614,562...82,648,553 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IMP (PMID:28561066) UniProt PMID:28561066 NCBI chr17:68,421,281...68,457,496
Ensembl chr17:68,420,948...68,457,513 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in IMP
IDA		 (PMID:20505359), (PMID:28561066)
(PMID:28890335)		 UniProt PMID:20505359 PMID:28561066 PMID:28890335 NCBI chr 7:5,190,233...5,233,855
Ensembl chr 7:5,190,196...5,233,840 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IMP (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chr 7:99,027,440...99,144,108
Ensembl chr 7:99,027,440...99,144,108 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27994061) Ensembl
MGI		 PMID:27994061 GO_REF:0000107 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23918802) Ensembl
MGI		 PMID:23918802 GO_REF:0000107 NCBI chr 6:31,879,759...31,897,698
Ensembl chr 6:31,879,759...31,897,698 		JBrowse link
G FEZ1 fasciculation and elongation protein zeta 1 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr11:125,442,881...125,496,265
Ensembl chr11:125,442,881...125,592,568 		JBrowse link
G FEZ2 fasciculation and elongation protein zeta 2 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr 2:36,552,258...36,598,168
Ensembl chr 2:36,531,805...36,646,087 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IMP (PMID:23916833) ParkinsonsUK-UCL PMID:23916833 NCBI chr12:40,224,997...40,369,285
Ensembl chr12:40,196,744...40,369,285 		JBrowse link
G MTM1 myotubularin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:23695157) Ensembl
MGI
GO_Central		 PMID:23695157 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:150,562,653...150,673,143
Ensembl chr  X:150,568,417...150,673,143 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IMP (PMID:20181828) UniProt PMID:20181828 NCBI chr16:28,532,708...28,538,974
Ensembl chr16:28,532,708...28,539,008 		JBrowse link
G PHF23 PHD finger protein 23 involved_in IMP
IBA		 (PMID:25484098) GO_Central PMID:25484098 GO_REF:0000033 NCBI chr17:7,235,038...7,240,828
Ensembl chr17:7,235,029...7,239,722 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IMP (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511 		JBrowse link
G SCFD1 sec1 family domain containing 1 involved_in IMP (PMID:21242315) UniProt PMID:21242315 NCBI chr14:30,622,254...30,735,850
Ensembl chr14:30,622,291...30,737,694 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in IMP (PMID:21242315) UniProt PMID:21242315 NCBI chr 1:120,150,898...120,176,520
Ensembl chr 1:120,150,898...120,176,520 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IMP (PMID:28195531) HGNC PMID:28195531 NCBI chr17:18,315,293...18,328,056
Ensembl chr17:18,315,293...18,328,056 		JBrowse link
G TMEM39A transmembrane protein 39A involved_in IMP
IBA		 (PMID:31806350) UniProt
GO_Central		 PMID:31806350 GO_REF:0000033 NCBI chr 3:119,428,949...119,463,615
Ensembl chr 3:119,428,949...119,468,830 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IDA (PMID:30952800), (PMID:31271352) UniProt PMID:30952800 PMID:31271352 NCBI chr11:64,894,546...64,917,209
Ensembl chr11:64,894,546...64,917,209 		JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chr 3:11,272,397...11,576,353
Ensembl chr 3:11,272,309...11,557,665 		JBrowse link
G BECN1 beclin 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:25561470 GO_REF:0000107 RGD:11561937 NCBI chr17:42,810,132...42,824,282
Ensembl chr17:42,810,134...42,833,350 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IMP (PMID:21072319) BHF-UCL PMID:21072319 NCBI chr 1:109,114,115...109,206,781
Ensembl chr 1:109,113,679...109,206,781 		JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IMP (PMID:25484098) GO_Central PMID:25484098 NCBI chr 9:127,451,486...127,503,501
Ensembl chr 9:127,451,489...127,503,499 		JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in IEA
IMP		 (PMID:33783314) Ensembl
UniProt		 PMID:33783314 GO_REF:0000107 NCBI chr14:93,182,199...93,184,897
Ensembl chr14:93,182,199...93,184,923 		JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr10:22,534,854...22,714,578
Ensembl chr10:22,534,854...22,714,578 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr17:38,765,691...38,799,556
Ensembl chr17:38,765,691...38,800,126 		JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr12:57,591,192...57,603,418
Ensembl chr12:57,591,174...57,603,418 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IMP
IBA		 (PMID:25495476) GO_Central PMID:25495476 GO_REF:0000033 NCBI chr 2:135,052,292...135,176,396
Ensembl chr 2:135,052,289...135,176,667 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IMP (PMID:25495476) GO_Central PMID:25495476 NCBI chr 1:220,148,293...220,272,453
Ensembl chr 1:220,148,293...220,272,529 		JBrowse link
G RALB RAS like proto-oncogene B involved_in IMP (PMID:24056301) UniProt PMID:24056301 NCBI chr 2:120,240,070...120,294,710
Ensembl chr 2:120,240,064...120,294,710 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IMP (PMID:21068542) UniProt PMID:21068542 NCBI chr 1:86,704,576...86,748,184
Ensembl chr 1:86,704,570...86,748,184 		JBrowse link
G SNX18 sorting nexin 18 involved_in IMP (PMID:29437695) UniProt PMID:29437695 NCBI chr 5:54,517,759...54,648,005
Ensembl chr 5:54,517,759...54,546,586 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IMP (PMID:32513819) UniProt PMID:32513819 NCBI chr 9:112,749,723...112,885,769
Ensembl chr 9:112,750,760...112,881,671 		JBrowse link
G SNX4 sorting nexin 4 involved_in IMP
IBA		 (PMID:32513819), (PMID:33468622) UniProt
GO_Central		 PMID:32513819 PMID:33468622 GO_REF:0000033 NCBI chr 3:125,446,650...125,520,202
Ensembl chr 3:125,446,650...125,520,202 		JBrowse link
G SNX7 sorting nexin 7 involved_in IMP (PMID:32513819) UniProt PMID:32513819 NCBI chr 1:98,661,319...98,760,500
Ensembl chr 1:98,661,701...98,760,500 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IDA (PMID:37943659) UniProt PMID:37943659 NCBI chr 9:116,687,305...116,701,299
Ensembl chr 9:116,687,305...116,701,300 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:23448468 GO_REF:0000107 RGD:13208863 NCBI chr12:131,894,622...131,923,150
Ensembl chr12:131,894,622...131,923,150 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IDA (PMID:31271352) UniProt PMID:31271352 NCBI chr  X:49,074,442...49,101,178
Ensembl chr  X:49,074,433...49,101,170 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IDA (PMID:31271352) UniProt PMID:31271352 NCBI chr17:68,421,281...68,457,496
Ensembl chr17:68,420,948...68,457,513 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAVL1 ELAV like RNA binding protein 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:33372336 GO_REF:0000107 RGD:407571673 NCBI chr19:7,958,573...8,005,641
Ensembl chr19:7,958,573...8,005,659 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr 2:233,251,673...233,295,669
Ensembl chr 2:233,210,051...233,295,674 		JBrowse link
G ATG5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chr 6:106,184,476...106,325,760
Ensembl chr 6:106,045,423...106,325,791 		JBrowse link
G IRGM immunity related GTPase M involved_in IMP (PMID:28389568) UniProt PMID:28389568 NCBI chr 5:150,846,521...150,902,402
Ensembl chr 5:150,846,521...150,900,736 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr 7:5,190,233...5,233,855
Ensembl chr 7:5,190,196...5,233,840 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFIP2 ARF interacting protein 2 involved_in IMP (PMID:33773106) UniProt PMID:33773106 NCBI chr11:6,476,519...6,481,331
Ensembl chr11:6,474,683...6,481,479 		JBrowse link
G ATG13 autophagy related 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:46,617,553...46,674,518
Ensembl chr11:46,617,527...46,674,818 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chr 2:233,251,673...233,295,669
Ensembl chr 2:233,210,051...233,295,674 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IMP (PMID:33773106) UniProt PMID:33773106 NCBI chr 2:241,637,693...241,673,857
Ensembl chr 2:241,637,213...241,673,857 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IMP (PMID:33773106) UniProt PMID:33773106 NCBI chr19:10,543,904...10,553,418
Ensembl chr19:10,543,895...10,553,418 		JBrowse link
G ATG9A autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:219,219,380...219,229,636
Ensembl chr 2:219,219,380...219,229,717 		JBrowse link
G ATG9B autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:151,012,209...151,024,499
Ensembl chr 7:151,012,209...151,024,499 		JBrowse link
G LRBA LPS responsive beige-like anchor protein involved_in IMP (PMID:33773106) UniProt PMID:33773106 NCBI chr 4:150,264,435...151,015,727
Ensembl chr 4:150,264,435...151,015,727 		JBrowse link
G MFN2 mitofusin 2 acts_upstream_of_or_within IDA (PMID:23455425) MGI PMID:23455425 NCBI chr 1:11,980,444...12,013,508
Ensembl chr 1:11,980,181...12,015,211 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IDA (PMID:23455425) MGI PMID:23455425 NCBI chr14:105,300,774...105,398,147
Ensembl chr14:105,300,563...105,398,147 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24098492) Ensembl
MGI		 PMID:24098492 GO_REF:0000107 NCBI chr18:41,955,234...42,087,830
Ensembl chr18:41,955,234...42,087,830 		JBrowse link
G STX17 syntaxin 17 acts_upstream_of_or_within IDA (PMID:23455425) MGI PMID:23455425 NCBI chr 9:99,906,654...99,974,534
Ensembl chr 9:99,906,654...99,974,534 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:49,074,442...49,101,178
Ensembl chr  X:49,074,433...49,101,170 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:82,614,562...82,648,444
Ensembl chr17:82,614,562...82,648,553 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:68,421,281...68,457,496
Ensembl chr17:68,420,948...68,457,513 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 IMP
ISO
IBA
IEA		 (PMID:28561066)
(PMID:24954904)		 UniProt
MGI
GO_Central
Ensembl		 PMID:24954904 PMID:28561066 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:5,190,233...5,233,855
Ensembl chr 7:5,190,196...5,233,840 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATM ATM serine/threonine kinase involved_in IC (PMID:37943659) UniProt PMID:37943659 NCBI chr11:108,223,067...108,369,102
Ensembl chr11:108,222,804...108,369,102 		JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IMP (PMID:27334615) UniProt PMID:27334615 NCBI chr 9:27,546,546...27,573,866
Ensembl chr 9:27,535,640...27,573,866 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in IDA (PMID:37943659) UniProt PMID:37943659 NCBI chr22:28,687,743...28,741,834
Ensembl chr22:28,687,743...28,742,422 		JBrowse link
G EFNB1 ephrin B1 acts_upstream_of_positive_effect IDA (PMID:33280498) UniProt PMID:33280498 NCBI chr  X:68,829,021...68,842,160
Ensembl chr  X:68,829,021...68,842,160 		JBrowse link
G EPHB2 EPH receptor B2 acts_upstream_of_positive_effect IDA (PMID:33280498) UniProt PMID:33280498 NCBI chr 1:22,710,838...22,921,500
Ensembl chr 1:22,710,839...22,921,500 		JBrowse link
G IFT20 intraflagellar transport 20 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:28,328,326...28,335,472
Ensembl chr17:28,328,325...28,335,489 		JBrowse link
G IFT88 intraflagellar transport 88 involved_in ISS UniProt GO_REF:0000024 NCBI chr13:20,567,157...20,691,444
Ensembl chr13:20,567,138...20,691,444 		JBrowse link
G MTMR3 myotubularin related protein 3 involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr22:29,883,174...30,030,868
Ensembl chr22:29,883,169...30,030,868 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IDA (PMID:23524951) UniProt PMID:23524951 NCBI chr 1:11,106,535...11,262,551
Ensembl chr 1:11,106,535...11,262,556 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IMP (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr 2:208,266,056...208,358,746
Ensembl chr 2:208,266,255...208,358,746 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family involved_in IMP (PMID:20545908) UniProt PMID:20545908 NCBI chr11:66,268,639...66,277,492
Ensembl chr11:66,268,590...66,277,492 		JBrowse link
G RAB5A RAB5A, member RAS oncogene family involved_in TAS (PMID:24440914) ParkinsonsUK-UCL PMID:24440914 NCBI chr 3:19,947,097...19,985,175
Ensembl chr 3:19,947,097...19,985,175 		JBrowse link
G RNF186 ring finger protein 186 acts_upstream_of_positive_effect IDA (PMID:33280498) UniProt PMID:33280498 NCBI chr 1:19,814,029...19,815,283
Ensembl chr 1:19,814,029...19,815,283 		JBrowse link
G RNF5 ring finger protein 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23093945) Ensembl
MGI		 PMID:23093945 GO_REF:0000107 NCBI chr 6:32,178,405...32,180,793
Ensembl chr 6:32,178,405...32,180,793 		JBrowse link
G TBC1D12 TBC1 domain family member 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr10:94,402,541...94,536,332
Ensembl chr10:94,402,541...94,536,332 		JBrowse link
G TBC1D14 TBC1 domain family member 14 involved_in IMP
IBA		 (PMID:22613832) BHF-UCL
GO_Central		 PMID:22613832 GO_REF:0000033 NCBI chr 4:6,909,466...7,033,114
Ensembl chr 4:6,909,242...7,033,118 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IMP (PMID:20529957) UniProt PMID:20529957 NCBI chr  X:56,563,627...56,567,868
Ensembl chr  X:56,563,627...56,567,868 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in ISO
IBA
IEA
IDA		 (PMID:22186024) RGD
GO_Central
Ensembl
ParkinsonsUK-UCL		 PMID:22186024 GO_REF:0000033 GO_REF:0000107 RGD:13442482 NCBI chr 1:16,985,958...17,011,928
Ensembl chr 1:16,985,958...17,011,928 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:28,466,653...28,492,082
Ensembl chr16:28,474,111...28,495,575 		JBrowse link
G DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IMP (PMID:32492081) UniProt PMID:32492081 NCBI chr 1:15,526,848...15,571,733
Ensembl chr 1:15,526,813...15,592,379 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRGQ immunity related GTPase Q involved_in IDA (PMID:39481378) UniProt PMID:39481378 NCBI chr19:43,584,367...43,596,134
Ensembl chr19:43,584,367...43,596,134 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IMP (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chr 7:99,027,440...99,144,108
Ensembl chr 7:99,027,440...99,144,108 		JBrowse link
G STBD1 starch binding domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:76,306,733...76,311,130
Ensembl chr 4:76,306,733...76,311,130 		JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IMP (PMID:23023224) UniProt PMID:23023224 NCBI chr22:35,299,275...35,347,973
Ensembl chr22:35,299,275...35,347,992 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 27213
    cellular process 19795
      process utilizing autophagic mechanism 638
        autophagy 638
          macroautophagy 392
            autophagosome organization 130
              autophagosome assembly + 121
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 27213
    cellular process 19795
      cellular component organization or biogenesis 7911
        cellular component organization 7680
          organelle organization 3886
            vacuole organization 251
              autophagosome organization 130
                autophagosome assembly + 121
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root