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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
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Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization

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autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:115,578,185...115,605,416
Ensembl chr20:115,578,261...115,605,647 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chr20:8,598,110...8,631,517
Ensembl chr20:8,598,628...8,630,990 		JBrowse link
G LOC119623630 lysosomal acid glucosylceramidase acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chr 1:47,759,850...47,874,458
Ensembl chr 1:47,795,954...47,877,028 		JBrowse link
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr25:24,855,712...24,926,050
Ensembl chr25:24,855,766...24,926,346 		JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chr26:38,386,000...38,482,236 JBrowse link
G ZFYVE26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:44,986,610...45,053,801
Ensembl chr24:44,986,609...45,053,134 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:18,777,807...18,932,784
Ensembl chr 1:18,734,926...18,932,785 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,971,007...12,976,914
Ensembl chr28:12,971,297...12,976,779 		JBrowse link
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr28:16,852,314...16,868,408
Ensembl chr28:16,851,998...16,868,395 		JBrowse link
G ATG10 autophagy related 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:76,092,887...76,378,175
Ensembl chr 4:76,092,832...76,377,403 		JBrowse link
G ATG101 autophagy related 101 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:48,243,200...48,251,129
Ensembl chr11:48,243,216...48,251,371 		JBrowse link
G ATG12 autophagy related 12 involved_in IEA InterPro
Ensembl		 GO_REF:0000002 GO_REF:0000107 NCBI chr23:19,073,545...19,087,603
Ensembl chr23:19,072,401...19,087,625 		JBrowse link
G ATG13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19211835) MGI
Ensembl
InterPro		 PMID:19211835 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:18,651,872...18,712,395
Ensembl chr 1:18,652,998...18,712,482 		JBrowse link
G ATG14 autophagy related 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr24:32,560,580...32,605,336
Ensembl chr24:32,559,955...32,605,282 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr10:119,286,609...119,331,226
Ensembl chr10:119,286,751...119,333,267 		JBrowse link
G ATG16L2 autophagy related 16 like 2 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:22082872) Ensembl
UniProt
InterPro		 PMID:22082872 GO_REF:0000002 GO_REF:0000107 NCBI chr 1:64,051,793...64,066,204
Ensembl chr 1:64,052,390...64,065,972 		JBrowse link
G ATG2A autophagy related 2A involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:9,316,567...9,339,244
Ensembl chr 1:9,316,675...9,339,265 		JBrowse link
G ATG2B autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:74,163,750...74,246,131
Ensembl chr24:74,163,442...74,246,116 		JBrowse link
G ATG3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21220506) Ensembl
TreeGrafter
MGI		 PMID:21220506 GO_REF:0000107 GO_REF:0000118 NCBI chr22:68,227,772...68,256,555
Ensembl chr22:68,228,203...68,257,503 		JBrowse link
G ATG4A autophagy related 4A cysteine peptidase involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:95,936,385...96,011,541
Ensembl chr  X:95,983,662...96,010,578 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in ISO (PMID:21177865)
(PMID:25578879)		 UniProt
ParkinsonsUK-UCL		 PMID:21177865 PMID:25578879 NCBI chr10:127,689,577...127,720,232 JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 Ensembl chr10:127,689,882...127,720,226 JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:70,209,536...70,291,750
Ensembl chr20:70,208,716...70,291,718 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:9,555,792...9,565,295
Ensembl chr 6:9,555,780...9,568,814 		JBrowse link
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:23704209) RGD
Ensembl
MGI		 PMID:16420522 PMID:23704209 GO_REF:0000107 RGD:1643189 NCBI chr13:67,482,538...67,619,201
Ensembl chr13:67,482,595...67,617,902 		JBrowse link
G ATG7 autophagy related 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23704209) MGI
TreeGrafter
Ensembl		 PMID:23704209 GO_REF:0000107 GO_REF:0000118 NCBI chr22:47,187,305...47,571,309
Ensembl chr22:47,325,614...47,571,070 		JBrowse link
G ATG9A autophagy related 9A involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr10:105,123,039...105,133,057
Ensembl chr10:105,124,412...105,131,409 		JBrowse link
G ATG9B autophagy related 9B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr21:119,197,387...119,209,578
Ensembl chr21:119,198,125...119,206,599 		JBrowse link
G ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:105,522,175...105,590,291
Ensembl chr11:105,522,157...105,590,958 		JBrowse link
G BAG3 BAG cochaperone 3 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr 9:112,439,954...112,465,875
Ensembl chr 9:112,439,782...112,466,086 		JBrowse link
G BECN1 beclin 1 involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl
UniProt		 PMID:16420522 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1643189 NCBI chr16:63,469,187...63,482,627
Ensembl chr16:63,469,192...63,485,322 		JBrowse link
G BECN2 beclin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:79,042,985...79,044,787
Ensembl chr25:79,043,385...79,044,707 		JBrowse link
G CTSD cathepsin D acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:1,570,163...1,581,857
Ensembl chr 1:1,570,069...1,581,833 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chr20:24,357,584...24,365,702 JBrowse link
G EMC6 ER membrane protein complex subunit 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:3,171,347...3,172,287
Ensembl chr16:3,171,766...3,172,095 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr13:26,152,974...26,266,676
Ensembl chr13:26,153,319...26,264,568 		JBrowse link
G IRGM immunity related GTPase M involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chr23:53,449,576...53,451,373 JBrowse link
G LOC103225886 endosome/lysosome-associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:24,339,508...24,429,525
Ensembl chr20:24,339,729...24,380,162 		JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:38,857,235...38,858,955
Ensembl chr 2:38,857,299...38,858,505 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chr 5:72,762,428...72,774,204
Ensembl chr 5:72,763,050...72,772,770 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chr  X:125,151,279...125,250,816
Ensembl chr  X:125,174,289...125,249,588 		JBrowse link
G NSFL1C NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:55,102,384...55,127,928
Ensembl chr 2:55,103,266...55,126,341 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:83,211,766...83,292,231
Ensembl chr24:83,212,300...83,295,233 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 RGD
Ensembl
TreeGrafter		 PMID:12453151 GO_REF:0000107 GO_REF:0000118 RGD:2303129 NCBI chr18:38,785,476...38,914,279
Ensembl chr18:38,787,717...38,914,185 		JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:50,394,310...50,476,521
Ensembl chr24:50,405,590...50,472,132 		JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in ISO (PMID:22939626) UniProt PMID:22939626 NCBI chr14:41,890,055...41,932,180 JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,383,064...14,418,144
Ensembl chr17:14,383,155...14,414,698 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:86,422,234...86,446,341
Ensembl chr 7:86,422,612...86,446,338 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:52,231,481...52,309,276
Ensembl chr22:52,230,835...52,309,306 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IEA InterPro
Ensembl
TreeGrafter		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:48,726,551...48,818,027
Ensembl chr 8:48,724,393...48,817,928 		JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr10:103,958,208...103,979,948
Ensembl chr10:103,958,495...103,979,410 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr23:42,153,576...42,160,903
Ensembl chr23:42,153,026...42,160,907 		JBrowse link
G STX12 syntaxin 12 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:104,966,763...105,020,908
Ensembl chr20:104,966,581...105,020,901 		JBrowse link
G SYNPO2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 7:66,376,599...66,550,500
Ensembl chr 7:66,392,958...66,549,961 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:6,484,469...6,497,008
Ensembl chr 1:6,484,474...6,494,719 		JBrowse link
G TMEM41B transmembrane protein 41B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:55,490,430...55,520,146
Ensembl chr 1:55,490,607...55,520,206 		JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:89,893,531...89,918,054
Ensembl chr 8:89,893,419...89,908,228 		JBrowse link
G TP53INP2 tumor protein p53 inducible nuclear protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:39,002,619...39,011,751
Ensembl chr 2:39,007,023...39,008,613 		JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:28,726,357...28,752,389
Ensembl chr 1:28,734,380...28,747,092 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:22,893,689...22,906,913
Ensembl chr12:22,894,886...22,896,847 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:94,462,867...94,512,313
Ensembl chr12:94,461,972...94,511,747 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:52,486,154...52,489,531
Ensembl chr  X:52,486,454...52,488,328 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:83,672,327...83,722,961
Ensembl chr14:83,673,282...83,703,633 		JBrowse link
G UBXN2B UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:54,397,523...54,436,468
Ensembl chr 8:54,397,601...54,432,523 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:127,276,172...127,304,270
Ensembl chr11:127,276,210...127,304,497 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:18,335,095...18,434,031
Ensembl chr16:18,335,235...18,433,578 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:8,628,289...8,635,465
Ensembl chr26:8,628,454...8,636,092 		JBrowse link
G VMP1 vacuole membrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:33,606,863...33,738,427
Ensembl chr16:33,609,202...33,738,289 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:46,183,278...46,188,564
Ensembl chr  X:46,183,443...46,188,536 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:74,514,729...74,549,860
Ensembl chr16:74,512,231...74,550,105 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:53,096,027...53,133,828
Ensembl chr16:53,096,023...53,135,010 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:16,504,557...16,558,670
Ensembl chr28:16,502,435...16,558,650 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:14,019,733...14,141,588
Ensembl chr28:14,019,968...14,141,795 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:63,469,187...63,482,627
Ensembl chr16:63,469,192...63,485,322 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:40,123,935...40,141,942
Ensembl chr17:40,124,640...40,141,616 		JBrowse link
G FEZ2 fasciculation and elongation protein zeta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:70,822,793...70,899,025
Ensembl chr14:70,822,885...70,865,129 		JBrowse link
G LOC103248766 fasciculation and elongation protein zeta-1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:116,617,835...116,668,601
Ensembl chr 1:116,617,714...116,668,574 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:36,490,775...36,634,215
Ensembl chr11:36,492,011...36,634,216 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23695157) MGI
TreeGrafter		 PMID:23695157 GO_REF:0000118 NCBI chr  X:125,151,279...125,250,816
Ensembl chr  X:125,174,289...125,249,588 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,382,125...26,385,605
Ensembl chr 5:26,382,132...26,385,348 		JBrowse link
G PHF23 PHD finger protein 23 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:6,609,106...6,613,693
Ensembl chr16:6,609,087...6,613,690 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:111,902,135...111,919,082
Ensembl chr20:111,902,765...111,919,069 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:13,602,852...13,624,483
Ensembl chr20:13,602,870...13,622,650 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:17,358,952...17,367,323
Ensembl chr16:17,359,577...17,366,851 		JBrowse link
G TMEM39A transmembrane protein 39A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:61,368,680...61,404,115
Ensembl chr22:61,368,711...61,406,395 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,316,567...9,339,244
Ensembl chr 1:9,316,675...9,339,265 		JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chr22:47,187,305...47,571,309
Ensembl chr22:47,325,614...47,571,070 		JBrowse link
G BECN1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chr16:63,469,187...63,482,627
Ensembl chr16:63,469,192...63,485,322 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chr20:24,357,584...24,365,702 JBrowse link
G LOC103225886 endosome/lysosome-associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:24,339,508...24,429,525
Ensembl chr20:24,339,729...24,380,162 		JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:10,623,118...10,677,002
Ensembl chr12:10,622,893...10,676,553 		JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr24:70,920,083...70,921,138 JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:22,306,307...22,482,074
Ensembl chr 9:22,306,312...22,481,954 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:67,391,786...67,429,560
Ensembl chr16:67,406,981...67,427,691 		JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:53,499,360...53,511,610
Ensembl chr11:53,499,432...53,509,799 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:19,295,294...19,401,595
Ensembl chr10:19,295,351...19,402,212 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:9,293,791...9,411,950
Ensembl chr25:9,293,838...9,415,319 		JBrowse link
G RALB RAS like proto-oncogene B involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:9,999,828...10,041,158
Ensembl chr10:9,999,904...10,016,473 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:46,707,556...46,746,785
Ensembl chr20:46,707,910...46,746,735 		JBrowse link
G SNX18 sorting nexin 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:50,782,842...50,810,220
Ensembl chr 4:50,782,929...50,811,253 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:26,650,088...26,774,395
Ensembl chr12:26,656,221...26,774,009 		JBrowse link
G SNX4 sorting nexin 4 involved_in IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chr22:55,311,896...55,389,174
Ensembl chr22:55,311,933...55,389,349 		JBrowse link
G SNX7 sorting nexin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:34,531,399...34,639,958
Ensembl chr20:34,531,151...34,639,107 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:22,893,689...22,906,913
Ensembl chr12:22,894,886...22,896,847 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chr11:127,276,172...127,304,270
Ensembl chr11:127,276,210...127,304,497 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:46,183,278...46,188,564
Ensembl chr  X:46,183,443...46,188,536 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:53,096,027...53,133,828
Ensembl chr16:53,096,023...53,135,010 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAVL1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chr 6:7,419,489...7,448,917
Ensembl chr 6:7,414,757...7,448,445 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr10:119,286,609...119,331,226
Ensembl chr10:119,286,751...119,333,267 		JBrowse link
G ATG5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chr13:67,482,538...67,619,201
Ensembl chr13:67,482,595...67,617,902 		JBrowse link
G IRGM immunity related GTPase M involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chr23:53,449,576...53,451,373 JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr28:16,504,557...16,558,670
Ensembl chr28:16,502,435...16,558,650 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFIP2 ARF interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:58,346,479...58,351,433
Ensembl chr 1:58,347,495...58,353,749 		JBrowse link
G ATG13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:18,651,872...18,712,395
Ensembl chr 1:18,652,998...18,712,482 		JBrowse link
G ATG16L1 autophagy related 16 like 1 acts_upstream_of_or_within
involved_in		 IEA Ensembl GO_REF:0000107 NCBI chr10:119,286,609...119,331,226
Ensembl chr10:119,286,751...119,333,267 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr10:127,689,577...127,720,232 JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 Ensembl chr10:127,689,882...127,720,226 JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:9,555,792...9,565,295
Ensembl chr 6:9,555,780...9,568,814 		JBrowse link
G ATG9A autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:105,123,039...105,133,057
Ensembl chr10:105,124,412...105,131,409 		JBrowse link
G ATG9B autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:119,197,387...119,209,578
Ensembl chr21:119,198,125...119,206,599 		JBrowse link
G LRBA LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr 7:96,714,031...97,606,153 JBrowse link
G MFN2 mitofusin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr20:119,787,700...119,818,455
Ensembl chr20:119,787,370...119,816,693 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr24:83,211,766...83,292,231
Ensembl chr24:83,212,300...83,295,233 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:38,785,476...38,914,279
Ensembl chr18:38,787,717...38,914,185 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:86,422,234...86,446,341
Ensembl chr 7:86,422,612...86,446,338 		JBrowse link
G STX17 syntaxin 17 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:39,457,816...39,525,138
Ensembl chr12:39,462,367...39,516,531 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chr28:16,504,557...16,558,670
Ensembl chr28:16,502,435...16,558,650 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHEK2 checkpoint kinase 2 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792 		JBrowse link
G EFNB1 ephrin B1 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr  X:58,668,572...58,681,583
Ensembl chr  X:58,668,581...58,681,855 		JBrowse link
G EPHB2 EPH receptor B2 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr20:109,747,883...109,954,936
Ensembl chr20:109,746,925...109,890,777 		JBrowse link
G IFT20 intraflagellar transport 20 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chr16:22,094,383...22,102,234 JBrowse link
G IFT20 intraflagellar transport 20 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:22,094,003...22,098,452 JBrowse link
G IFT88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chr 3:435,649...546,661
Ensembl chr 3:436,207...546,583 		JBrowse link
G MTMR3 myotubularin related protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:12,772,193...12,917,177
Ensembl chr19:12,843,491...12,912,121 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,522,667...120,678,988
Ensembl chr20:120,525,737...120,679,020 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:94,051,096...94,144,968
Ensembl chr10:94,056,923...94,145,268 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:7,989,521...7,998,371
Ensembl chr 1:7,989,101...7,998,105 		JBrowse link
G RNF186 ring finger protein 186 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr20:112,729,333...112,732,063
Ensembl chr20:112,731,000...112,731,683 		JBrowse link
G RNF5 ring finger protein 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:39,851,491...39,853,912
Ensembl chr17:39,851,874...39,853,819 		JBrowse link
G TBC1D14 TBC1 domain family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:43,028,552...43,147,870
Ensembl chr27:43,029,135...43,146,474 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:52,486,154...52,489,531
Ensembl chr  X:52,486,454...52,488,328 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:22186024 GO_REF:0000107 GO_REF:0000118 RGD:13442482 NCBI chr20:115,578,185...115,605,416
Ensembl chr20:115,578,261...115,605,647 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:26,320,132...26,343,009
Ensembl chr 5:26,320,061...26,337,402 		JBrowse link
G DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:116,724,259...116,770,838
Ensembl chr20:116,727,371...116,770,510 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP3 BCL2 interacting protein 3 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:124,570,958...124,586,002
Ensembl chr 9:124,568,695...124,585,980 		JBrowse link
G IRGQ immunity related GTPase Q involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:37,111,782...37,116,258
Ensembl chr 6:37,112,015...37,115,322 		JBrowse link
G RETREG1 reticulophagy regulator 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 4:16,153,003...16,297,252
Ensembl chr 4:16,154,694...16,297,161 		JBrowse link
G RETREG2 reticulophagy regulator family member 2 involved_in IEA GOC GO_REF:0000108 NCBI chr10:105,086,367...105,091,980
Ensembl chr10:105,086,610...105,090,896 		JBrowse link
G RETREG3 reticulophagy regulator family member 3 involved_in IEA GOC GO_REF:0000108 NCBI chr16:63,680,831...63,708,160
Ensembl chr16:63,680,890...63,710,015 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:14,019,733...14,141,588
Ensembl chr28:14,019,968...14,141,795 		JBrowse link
G STBD1 starch binding domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:24,799,870...24,804,273
Ensembl chr 7:24,799,906...24,804,473 		JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,062,890...18,110,306
Ensembl chr19:18,062,948...18,111,585 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19829
    cellular process 19347
      process utilizing autophagic mechanism 551
        autophagy 551
          macroautophagy 333
            autophagosome organization 124
              autophagosome assembly + 114
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 19829
    cellular process 19347
      cellular component organization or biogenesis 8804
        cellular component organization 8578
          organelle organization 3642
            vacuole organization 226
              autophagosome organization 124
                autophagosome assembly + 114
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root