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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
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Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization


show annotations for term's descendants           Sort by:
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:81,196,355...81,215,736
Ensembl chr 2:81,196,463...81,215,689 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:42,317,704...42,322,285
Ensembl chr 7:42,317,862...42,322,864 		JBrowse link
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chr21:39,693,211...39,868,603
Ensembl chr21:39,695,520...39,784,639 		JBrowse link
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr38:974,248...1,016,226
Ensembl chr38:975,749...1,027,679 		JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr30:11,233,709...11,305,454
Ensembl chr30:11,233,718...11,305,485 		JBrowse link
G ZFYVE26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:41,714,654...41,777,996
Ensembl chr 8:41,715,485...41,777,422 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr18:42,903,815...43,073,918
Ensembl chr18:42,932,513...43,072,827 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:9,488,496...9,492,703
Ensembl chr 6:9,486,372...9,492,243 		JBrowse link
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:12,847,699...12,858,769
Ensembl chr 6:12,847,713...12,858,681 		JBrowse link
G ATG10 autophagy related 10 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 3:25,214,203...25,436,448 JBrowse link
G ATG101 autophagy related 101 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr27:2,931,595...2,934,914
Ensembl chr27:2,931,893...2,935,123 		JBrowse link
G ATG12 autophagy related 12 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr11:5,531,062...5,543,034
Ensembl chr11:5,531,759...5,542,743 		JBrowse link
G ATG13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19211835) MGI
Ensembl
InterPro		 PMID:19211835 GO_REF:0000002 GO_REF:0000107 NCBI chr18:42,834,538...42,886,873
Ensembl chr18:42,836,755...42,886,855 		JBrowse link
G ATG14 autophagy related 14 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:31,199,097...31,234,200
Ensembl chr 8:31,201,709...31,234,217 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr25:44,761,034...44,800,033
Ensembl chr25:44,761,185...44,798,672 		JBrowse link
G ATG16L2 autophagy related 16 like 2 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:22082872) InterPro
UniProt
Ensembl		 PMID:22082872 GO_REF:0000002 GO_REF:0000107 NCBI chr21:25,404,667...25,433,456
Ensembl chr21:25,405,694...25,419,896 		JBrowse link
G ATG2A autophagy related 2A involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr18:52,258,070...52,277,953
Ensembl chr18:52,258,187...52,277,965 		JBrowse link
G ATG2B autophagy related 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:65,039,960...65,110,811
Ensembl chr 8:65,044,194...65,110,796 		JBrowse link
G ATG3 autophagy related 3 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:21220506) Ensembl
GO_Central
MGI		 PMID:21220506 GO_REF:0000033 GO_REF:0000107 NCBI chr33:17,046,951...17,073,203
Ensembl chr33:17,046,973...17,073,150 		JBrowse link
G ATG4A autophagy related 4A cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:81,629,346...81,688,086
Ensembl chr  X:81,629,465...81,688,099 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr25:51,494,316...51,518,683
Ensembl chr25:51,504,537...51,517,659 		JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:47,273,387...47,359,452
Ensembl chr 5:47,188,816...47,359,402 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr20:50,618,458...50,623,703
Ensembl chr20:50,618,459...50,624,179 		JBrowse link
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within		 ISO
IBA
IEA		 (PMID:23704209) RGD
GO_Central
MGI
Ensembl		 PMID:16420522 PMID:23704209 GO_REF:0000033 GO_REF:0000107 RGD:1643189 NCBI chr12:63,565,859...63,692,383
Ensembl chr12:63,567,568...63,683,485 		JBrowse link
G ATG7 autophagy related 7 involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 (PMID:23704209) Ensembl
GO_Central
MGI		 PMID:23704209 GO_REF:0000033 GO_REF:0000107 NCBI chr20:6,916,354...7,154,849
Ensembl chr20:6,916,515...7,154,800 		JBrowse link
G ATG9A autophagy related 9A involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr37:25,768,287...25,777,529
Ensembl chr37:25,768,275...25,890,811 		JBrowse link
G ATG9B autophagy related 9B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr16:15,072,436...15,082,867
Ensembl chr16:15,072,312...15,080,397 		JBrowse link
G ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr26:8,148,181...8,209,392
Ensembl chr26:8,148,236...8,209,388 		JBrowse link
G BAG3 BAG cochaperone 3 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr28:29,792,612...29,815,466
Ensembl chr28:29,792,777...29,815,138 		JBrowse link
G BECN1 beclin 1 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl
UniProt		 PMID:16420522 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 RGD:1643189 NCBI chr 9:20,204,203...20,215,081
Ensembl chr 9:20,204,220...20,214,236 		JBrowse link
G BECN2 beclin 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:33,318,124...33,356,388
Ensembl chr 7:33,317,730...33,350,325 		JBrowse link
G CTSD cathepsin D acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:46,010,440...46,019,457
Ensembl chr18:46,010,440...46,019,457 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:42,612,130...42,681,161
Ensembl chr 6:42,613,546...42,681,015 		JBrowse link
G EMC6 ER membrane protein complex subunit 6 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:47,497,354...47,498,861
Ensembl chr 9:47,497,719...47,498,048 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:24430976) MGI PMID:24430976 NCBI chr 1:36,835,775...36,977,653
Ensembl chr 1:36,870,594...36,931,847 		JBrowse link
G GABARAP GABA type A receptor-associated protein involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:32,207,879...32,209,976
Ensembl chr 5:32,207,887...32,209,908 		JBrowse link
G GABARAPL1 GABA type A receptor associated protein like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr27:35,783,203...35,791,576
Ensembl chr27:35,782,330...35,791,569 		JBrowse link
G GABARAPL2 GABA type A receptor associated protein like 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:75,230,214...75,240,724
Ensembl chr 5:75,230,243...75,240,730 		JBrowse link
G IFGGB1 T-cell-specific guanine nucleotide triphosphate-binding protein 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:571,254...588,689 JBrowse link
G IFGGB2 interferon-inducible GTPase 1-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:857,713...873,282
Ensembl chr11:859,108...864,008 		JBrowse link
G IFGGC1 interferon-inducible GTPase 1-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:829,191...840,342 JBrowse link
G LOC100684769 immunity-related GTPase family M protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:920,516...957,869 JBrowse link
G LOC119865231 UBX domain-containing protein 2A involved_in IBA GO_Central GO_REF:0000033
G LOC119877912 beclin-1 involved_in IEA
IBA		 UniProt
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107
G LOC481472 T-cell-specific guanine nucleotide triphosphate-binding protein 2-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:806,686...808,007 JBrowse link
G LOC481473 immunity-related GTPase family M protein involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chr11:793,416...795,373
Ensembl chr11:793,424...794,617 		JBrowse link
G LOC606863 immunity-related GTPase family M protein-like involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chr11:506,981...523,338
Ensembl chr11:509,636...510,829 		JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha involved_in ISO PMID:11060023
(PMID:24290141)		 UniProt PMID:11060023 PMID:24290141 RGD:8554284 NCBI chr24:23,672,343...23,673,937
Ensembl chr24:23,633,579...23,673,921 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chr 5:65,669,553...65,683,445 JBrowse link
G MAP1LC3B involved_in IBA GO_Central GO_REF:0000033
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:33,364,569...33,369,080
Ensembl chr 7:33,365,045...33,368,969 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chr  X:118,820,644...118,917,166
Ensembl chr  X:118,820,494...118,916,368 		JBrowse link
G NSFL1C NSFL1 cofactor involved_in IBA GO_Central GO_REF:0000033 NCBI chr24:19,575,543...19,599,002
Ensembl chr24:19,575,580...19,597,653 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:72,672,861...72,721,655
Ensembl chr 8:72,673,472...72,721,215 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 RGD
Ensembl
GO_Central		 PMID:12453151 GO_REF:0000033 GO_REF:0000107 RGD:2303129 NCBI chr 7:48,663,381...48,800,350
Ensembl chr 7:48,663,381...48,800,437 		JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532 		JBrowse link
G RAB19 RAB19, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:8,544,353...8,562,714
Ensembl chr16:8,544,804...8,562,346 		JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:64,564,351...64,590,654
Ensembl chr10:64,564,298...64,590,705 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:24,388,530...24,438,956
Ensembl chr12:24,387,643...24,421,869 		JBrowse link
G RAB33A RAB33A, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:101,311,752...101,322,825
Ensembl chr  X:101,312,611...101,322,689 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr19:3,256,790...3,273,198
Ensembl chr19:3,259,119...3,274,153 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:2,704,716...2,776,518
Ensembl chr20:2,704,752...2,826,636 		JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr29:4,445,668...4,544,223
Ensembl chr29:4,375,785...4,517,168 		JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr37:24,809,365...24,830,254
Ensembl chr37:24,809,359...24,829,724 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:34,783,947...34,792,204
Ensembl chr 2:34,784,232...34,789,072 		JBrowse link
G STX12 syntaxin 12 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:72,546,178...72,582,706
Ensembl chr 2:72,547,608...72,582,660 		JBrowse link
G SYNPO2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr32:37,844,844...38,026,755
Ensembl chr32:37,812,903...38,024,489 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:49,784,480...49,794,361
Ensembl chr18:49,784,490...49,794,317 		JBrowse link
G TMEM41B transmembrane protein 41B involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr21:32,598,075...32,632,614
Ensembl chr21:32,599,425...32,621,761 		JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr29:39,575,782...39,593,389
Ensembl chr29:39,580,496...39,593,518 		JBrowse link
G TP53INP2 tumor protein p53 inducible nuclear protein 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr24:23,768,208...23,801,268
Ensembl chr24:23,792,687...23,799,331 		JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:31,674,242...31,689,160
Ensembl chr18:31,675,391...31,688,641 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:70,453,130...70,465,030
Ensembl chr11:70,462,007...70,463,974 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:75,767,345...75,812,278
Ensembl chr 1:75,767,188...75,838,051 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:18,446,856...18,491,797
Ensembl chr17:18,408,251...18,505,676 		JBrowse link
G UBXN2B UBX domain protein 2B involved_in IBA GO_Central GO_REF:0000033 NCBI chr29:9,229,070...9,258,269
Ensembl chr29:9,228,985...9,259,372 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr26:968,714...982,244
Ensembl chr26:970,138...982,229 		JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:40,355,070...40,437,758
Ensembl chr 5:40,354,263...40,435,747 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IBA GO_Central GO_REF:0000033 NCBI chr30:37,897,641...37,903,625
Ensembl chr30:37,897,804...37,903,700 		JBrowse link
G VMP1 vacuole membrane protein 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:34,197,045...34,340,401
Ensembl chr 9:34,197,133...34,339,597 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,221,261...42,237,535
Ensembl chr  X:42,218,046...42,226,422 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IEA Ensembl GO_REF:0000107
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:15,115,098...15,147,893
Ensembl chr 9:15,115,315...15,149,147 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:12,656,469...12,698,623
Ensembl chr 6:12,658,239...12,698,734 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:10,385,781...10,498,071
Ensembl chr 6:10,385,779...10,494,922 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:20,204,203...20,215,081
Ensembl chr 9:20,204,220...20,214,236 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:1,341,202...1,354,602
Ensembl chr12:1,341,191...1,354,584 		JBrowse link
G FEZ1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:9,001,927...9,044,330
Ensembl chr 5:9,001,989...9,044,332 		JBrowse link
G FEZ2 fasciculation and elongation protein zeta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:29,043,449...29,086,104
Ensembl chr17:29,044,355...29,086,100 		JBrowse link
G LOC119877912 beclin-1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:13,282,824...13,420,917
Ensembl chr27:13,283,756...13,420,870 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:23695157) MGI
GO_Central		 PMID:23695157 GO_REF:0000033 NCBI chr  X:118,820,644...118,917,166
Ensembl chr  X:118,820,494...118,916,368 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:18,222,367...18,224,015
Ensembl chr 6:18,222,515...18,224,014 		JBrowse link
G PHF23 PHD finger protein 23 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:32,202,636...32,207,738
Ensembl chr 5:32,202,825...32,207,000 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,276,091...78,293,761
Ensembl chr 2:78,277,077...78,294,123 		JBrowse link
G SCFD1 sec1 family domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:9,970,724...10,077,123
Ensembl chr 8:9,970,790...10,077,122 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chr17:57,094,038...57,115,891
Ensembl chr17:57,053,218...57,115,886 		JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107
G TMEM39A transmembrane protein 39A involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr33:23,083,979...23,121,269
Ensembl chr33:23,084,919...23,116,210 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:52,258,070...52,277,953
Ensembl chr18:52,258,187...52,277,965 		JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chr20:6,916,354...7,154,849
Ensembl chr20:6,916,515...7,154,800 		JBrowse link
G BECN1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chr 9:20,204,203...20,215,081
Ensembl chr 9:20,204,220...20,214,236 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,612,130...42,681,161
Ensembl chr 6:42,613,546...42,681,015 		JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) GO_Central PMID:25484098 NCBI chr 9:55,855,576...55,894,915
Ensembl chr 9:55,856,091...55,894,488 		JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in ISO (PMID:33783314) UniProt PMID:33783314
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:10,464,019...10,642,365
Ensembl chr 2:10,463,010...10,640,327 		JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:23,445,350...23,473,195
Ensembl chr 9:23,445,482...23,470,184 		JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:1,670,076...1,680,975
Ensembl chr10:1,672,380...1,680,840 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr19:37,861,844...38,006,433
Ensembl chr19:37,861,804...37,963,501 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr38:14,927,670...15,025,554
Ensembl chr38:14,928,628...15,025,865 		JBrowse link
G RALB RAS like proto-oncogene B involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:29,820,006...29,868,345
Ensembl chr19:29,768,359...29,868,335 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:61,439,414...61,471,414
Ensembl chr 6:61,439,415...61,462,087 		JBrowse link
G SNX18 sorting nexin 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:60,803,245...60,945,317
Ensembl chr 4:60,835,783...60,945,828 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:67,233,469...67,294,159
Ensembl chr11:67,233,256...67,289,224 		JBrowse link
G SNX4 sorting nexin 4 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr33:28,413,586...28,468,546
Ensembl chr33:28,419,128...28,469,488 		JBrowse link
G SNX7 sorting nexin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:51,004,307...51,388,283
Ensembl chr 6:51,025,203...51,094,539 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:70,453,130...70,465,030
Ensembl chr11:70,462,007...70,463,974 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chr26:968,714...982,244
Ensembl chr26:970,138...982,229 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,221,261...42,237,535
Ensembl chr  X:42,218,046...42,226,422 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:15,115,098...15,147,893
Ensembl chr 9:15,115,315...15,149,147 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAVL1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chr20:52,648,878...52,677,578 JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr25:44,761,034...44,800,033
Ensembl chr25:44,761,185...44,798,672 		JBrowse link
G ATG5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chr12:63,565,859...63,692,383
Ensembl chr12:63,567,568...63,683,485 		JBrowse link
G LOC481473 immunity-related GTPase family M protein involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chr11:793,416...795,373
Ensembl chr11:793,424...794,617 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr 6:12,656,469...12,698,623
Ensembl chr 6:12,658,239...12,698,734 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFIP2 ADP ribosylation factor interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:29,793,325...29,798,223
Ensembl chr21:29,791,813...29,798,172 		JBrowse link
G ATG13 autophagy related 13 involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:42,834,538...42,886,873
Ensembl chr18:42,836,755...42,886,855 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr25:44,761,034...44,800,033
Ensembl chr25:44,761,185...44,798,672 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:51,494,316...51,518,683
Ensembl chr25:51,504,537...51,517,659 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:50,618,458...50,623,703
Ensembl chr20:50,618,459...50,624,179 		JBrowse link
G ATG9A autophagy related 9A involved_in IBA GO_Central GO_REF:0000033 NCBI chr37:25,768,287...25,777,529
Ensembl chr37:25,768,275...25,890,811 		JBrowse link
G ATG9B autophagy related 9B involved_in IBA GO_Central GO_REF:0000033 NCBI chr16:15,072,436...15,082,867
Ensembl chr16:15,072,312...15,080,397 		JBrowse link
G LRBA LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr15:48,273,866...48,996,546
Ensembl chr15:48,274,881...48,995,697 		JBrowse link
G MFN2 mitofusin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 2:84,284,719...84,310,715
Ensembl chr 2:84,284,719...84,308,225 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 8:72,672,861...72,721,655
Ensembl chr 8:72,673,472...72,721,215 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:48,663,381...48,800,350
Ensembl chr 7:48,663,381...48,800,437 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:3,256,790...3,273,198
Ensembl chr19:3,259,119...3,274,153 		JBrowse link
G STX17 syntaxin 17 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:56,885,874...56,951,714
Ensembl chr11:56,885,174...56,945,767 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:42,221,261...42,237,535
Ensembl chr  X:42,218,046...42,226,422 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IBA GO_Central GO_REF:0000033
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:15,115,098...15,147,893
Ensembl chr 9:15,115,315...15,149,147 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 (PMID:24954904) MGI
Ensembl
GO_Central		 PMID:24954904 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:12,656,469...12,698,623
Ensembl chr 6:12,658,239...12,698,734 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:45,664,942...45,688,777
Ensembl chr11:45,666,293...45,688,780 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:22,052,256...22,145,675
Ensembl chr26:21,427,961...22,240,624 		JBrowse link
G EFNB1 ephrin B1 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr  X:53,292,407...53,303,824
Ensembl chr  X:53,292,565...53,304,600 		JBrowse link
G EPHB2 EPH receptor B2 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr 2:76,427,112...76,551,494
Ensembl chr 2:76,428,203...76,612,786 		JBrowse link
G IFT20 intraflagellar transport 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,581,117...42,587,830
Ensembl chr 9:42,581,433...42,587,804 		JBrowse link
G IFT88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266 		JBrowse link
G MTMR3 myotubularin related protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:23,047,500...23,187,694
Ensembl chr26:23,047,345...23,186,262 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:84,818,893...84,939,283
Ensembl chr 2:84,787,708...84,939,114 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:16,537,095...16,620,427
Ensembl chr37:16,541,562...16,619,554 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) UniProt PMID:20545908 NCBI chr18:51,026,975...51,034,356
Ensembl chr18:51,028,013...51,034,473 		JBrowse link
G RNF186 ring finger protein 186 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr 2:78,915,131...78,916,909
Ensembl chr 2:78,915,339...78,916,037 		JBrowse link
G RNF5 ring finger protein 5 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr12:1,571,277...1,575,151
Ensembl chr12:1,571,420...1,573,506 		JBrowse link
G TBC1D12 TBC1 domain family member 12 involved_in IBA GO_Central GO_REF:0000033 NCBI chr28:8,519,852...8,642,836
Ensembl chr28:8,544,872...8,641,062 		JBrowse link
G TBC1D14 TBC1 domain family member 14 involved_in ISO (PMID:22613832) BHF-UCL PMID:22613832 NCBI chr 3:58,992,743...59,097,581
Ensembl chr 3:58,926,237...59,097,621 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in ISO (PMID:20529957) UniProt PMID:20529957 NCBI chr  X:47,860,923...47,864,282 JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:22186024 GO_REF:0000033 GO_REF:0000107 RGD:13442482 NCBI chr 2:81,196,355...81,215,736
Ensembl chr 2:81,196,463...81,215,689 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:18,252,543...18,266,033
Ensembl chr 6:18,254,139...18,266,033 		JBrowse link
G DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:81,990,339...82,031,348
Ensembl chr 2:81,993,257...82,031,306 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BNIP3 BCL2 interacting protein 3 involved_in IEA GOC GO_REF:0000108 NCBI chr28:40,037,681...40,050,499
Ensembl chr28:40,038,643...40,049,797 		JBrowse link
G IRGQ immunity related GTPase Q involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,532,975...111,540,585
Ensembl chr 1:111,532,317...111,537,042 		JBrowse link
G RETREG2 reticulophagy regulator family member 2 involved_in IEA GOC GO_REF:0000108 NCBI chr37:25,734,960...25,740,950
Ensembl chr37:25,734,960...25,739,808 		JBrowse link
G RETREG3 reticulophagy regulator family member 3 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:20,363,729...20,385,580
Ensembl chr 9:20,363,823...20,385,592 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:10,385,781...10,498,071
Ensembl chr 6:10,385,779...10,494,922 		JBrowse link
G STBD1 starch binding domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr32:932,245...953,070
Ensembl chr32:951,698...952,897 		JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:28,782,910...28,822,634
Ensembl chr10:28,775,300...28,822,570 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22141
    cellular process 21672
      process utilizing autophagic mechanism 537
        autophagy 537
          macroautophagy 336
            autophagosome organization 137
              autophagosome assembly + 128
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 22141
    cellular process 21672
      cellular component organization or biogenesis 10063
        cellular component organization 9831
          organelle organization 3649
            vacuole organization 233
              autophagosome organization 137
                autophagosome assembly + 128
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root