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ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
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Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization

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autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) ParkinsonsUK-UCL PMID:22186024 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chrNW_004955545:1,682,097...1,689,373
Ensembl chrNW_004955545:1,682,097...1,689,376 		JBrowse link
G Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004955414:31,896,161...31,999,730
Ensembl chrNW_004955414:31,896,161...31,999,730 		JBrowse link
G Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004955406:40,247,690...40,317,556
Ensembl chrNW_004955406:40,247,382...40,317,556 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004955416:11,084,448...11,168,478
Ensembl chrNW_004955416:11,086,176...11,168,332 		JBrowse link
G Zfyve26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within ISO (PMID:25365221) MGI PMID:25365221 NCBI chrNW_004955466:2,389,893...2,453,487
Ensembl chrNW_004955466:2,390,527...2,451,664 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ambra1 autophagy and beclin 1 regulator 1 involved_in ISO (PMID:25215947)
(PMID:20921139), (PMID:23524951)		 ParkinsonsUK-UCL
UniProt		 PMID:20921139 PMID:23524951 PMID:25215947 NCBI chrNW_004955422:1,455,392...1,644,368
Ensembl chrNW_004955422:1,455,380...1,644,452 		JBrowse link
G Ap4m1 adaptor related protein complex 4 subunit mu 1 involved_in ISO (PMID:29180427) UniProt PMID:29180427 NCBI chrNW_004955573:759,222...763,222
Ensembl chrNW_004955573:759,222...763,222 		JBrowse link
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within ISO (PMID:30930081) MGI PMID:30930081 NCBI chrNW_004955460:10,997,554...11,009,435
Ensembl chrNW_004955460:10,996,796...11,009,525 		JBrowse link
G Atg10 autophagy related 10 involved_in ISO (PMID:16963840) UniProt PMID:16963840 NCBI chrNW_004955418:28,118,843...28,368,358
Ensembl chrNW_004955418:28,119,912...28,363,714 		JBrowse link
G Atg101 autophagy related 101 involved_in ISO (PMID:19597335)
(PMID:19225151)		 UniProt
ComplexPortal		 PMID:19225151 PMID:19597335 NCBI chrNW_004955547:2,436,974...2,446,849
Ensembl chrNW_004955547:2,436,895...2,446,849 		JBrowse link
G Atg12 autophagy related 12 involved_in ISO (PMID:11266458) ComplexPortal PMID:11266458 NCBI chrNW_004955408:35,607,541...35,620,878
Ensembl chrNW_004955408:35,607,541...35,620,878 		JBrowse link
G Atg13 autophagy related 13 involved_in
acts_upstream_of_or_within		 ISO (PMID:19211835)
(PMID:19225151)
(PMID:19258318)		 UniProt
ComplexPortal
MGI		 PMID:19211835 PMID:19225151 PMID:19258318 NCBI chrNW_004955422:1,398,646...1,432,440
Ensembl chrNW_004955422:1,398,593...1,432,438 		JBrowse link
G Atg14 autophagy related 14 involved_in ISO (PMID:19270696)
(PMID:20713597)		 UniProt PMID:19270696 PMID:20713597 NCBI chrNW_004955466:13,898,311...13,972,506
Ensembl chrNW_004955466:13,898,298...13,972,506 		JBrowse link
G Atg16l1 autophagy related 16 like 1 involved_in ISO (PMID:30778222)
(PMID:11266458)		 UniProt
ComplexPortal		 PMID:11266458 PMID:30778222 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581 		JBrowse link
G Atg16l2 autophagy related 16 like 2 NOT|involved_in ISO (PMID:22082872)
(PMID:11266458)		 UniProt
ComplexPortal		 PMID:11266458 PMID:22082872 NCBI chrNW_004955414:18,600,904...18,618,048
Ensembl chrNW_004955414:18,604,505...18,618,046 		JBrowse link
G Atg2a autophagy related 2A involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004955422:20,261,749...20,290,879
Ensembl chrNW_004955422:20,271,330...20,291,875 		JBrowse link
G Atg3 autophagy related 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:33446636)
(PMID:24747438)
(PMID:20723759)
(PMID:21220506)		 UniProt
MGI		 PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 NCBI chrNW_004955427:12,881,454...12,906,399 JBrowse link
G Atg4a autophagy related 4A cysteine peptidase involved_in ISO (PMID:21177865) UniProt PMID:21177865 NCBI chrNW_004955490:7,765,145...7,825,126
Ensembl chrNW_004955490:7,762,623...7,788,705 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in ISO (PMID:21177865)
(PMID:25578879)		 UniProt
ParkinsonsUK-UCL		 PMID:21177865 PMID:25578879 NCBI chrNW_004955542:164,969...192,498
Ensembl chrNW_004955542:166,365...193,006 		JBrowse link
G Atg4c autophagy related 4C cysteine peptidase involved_in ISO (PMID:21177865) UniProt PMID:21177865 NCBI chrNW_004955423:26,813,865...26,993,308
Ensembl chrNW_004955423:26,928,147...26,993,308 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in ISO (PMID:21177865) UniProt PMID:21177865 NCBI chrNW_004955495:1,739,982...1,746,362
Ensembl chrNW_004955495:1,739,982...1,746,362 		JBrowse link
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within		 ISO (PMID:11266458)
(PMID:23704209)
(PMID:23202584)		 RGD
UniProt
MGI		 PMID:11266458 PMID:16420522 PMID:23202584 PMID:23704209 RGD:1643189 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827 		JBrowse link
G Atg7 autophagy related 7 involved_in
acts_upstream_of_or_within		 ISO (PMID:22170151)
(PMID:20080761)
(PMID:23704209)		 UniProt
ParkinsonsUK-UCL
MGI		 PMID:20080761 PMID:22170151 PMID:23704209 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236 		JBrowse link
G Atg9a autophagy related 9A acts_upstream_of_or_within
involved_in		 ISO (PMID:15755735), (PMID:22456507)
(PMID:23402761)
(PMID:22456507)
(PMID:29180427)
(PMID:29437695), (PMID:32513819), (PMID:33468622)		 MGI
UniProt		 PMID:15755735 PMID:22456507 PMID:23402761 PMID:29180427 PMID:29437695 More... NCBI chrNW_004955453:14,203,798...14,214,760
Ensembl chrNW_004955453:14,206,065...14,213,729 		JBrowse link
G Atg9b autophagy related 9B acts_upstream_of_or_within ISO (PMID:15755735) MGI PMID:15755735 NCBI chrNW_004955491:5,458,152...5,467,260
Ensembl chrNW_004955491:5,458,398...5,465,551 		JBrowse link
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in ISO (PMID:28890335) UniProt PMID:28890335 NCBI chrNW_004955482:7,233,336...7,295,754
Ensembl chrNW_004955482:7,233,336...7,295,754 		JBrowse link
G Bag3 BAG cochaperone 3 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chrNW_004955551:446,322...468,329
Ensembl chrNW_004955551:446,605...469,207 		JBrowse link
G Becn1 beclin 1 involved_in ISO (PMID:23332761)
(PMID:25891078)		 RGD
UniProt		 PMID:16420522 PMID:23332761 PMID:25891078 RGD:1643189 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Ctsd cathepsin D acts_upstream_of_or_within ISO (PMID:15452145) MGI PMID:15452145 NCBI chrNW_004955422:13,576,315...13,584,267
Ensembl chrNW_004955422:13,576,202...13,584,298 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chrNW_004955435:12,531,651...12,626,969
Ensembl chrNW_004955435:12,531,642...12,627,874 		JBrowse link
G Emc6 ER membrane protein complex subunit 6 involved_in ISO (PMID:23182941) UniProt PMID:23182941 NCBI chrNW_004955467:13,144,659...13,146,434
Ensembl chrNW_004955467:13,144,659...13,146,434 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:24430976) MGI PMID:24430976 NCBI chrNW_004955436:14,925,452...14,982,357
Ensembl chrNW_004955436:14,926,123...14,983,180 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:16888103) UniProt PMID:16888103 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Map1lc3a microtubule associated protein 1 light chain 3 alpha involved_in ISO (PMID:24290141)
PMID:11060023		 UniProt PMID:11060023 PMID:24290141 RGD:8554284 NCBI chrNW_004955422:26,774,466...26,776,024
Ensembl chrNW_004955422:26,774,922...26,775,884 		JBrowse link
G Map1lc3b microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004955541:1,852,388...1,868,194 JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004955538:3,559,738...3,616,862
Ensembl chrNW_004955538:3,559,724...3,619,649 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 ISO (PMID:24098492)
(PMID:33637724)		 RGD
MGI
UniProt		 PMID:12453151 PMID:24098492 PMID:33637724 RGD:2303129 NCBI chrNW_004955402:28,081,150...28,195,305
Ensembl chrNW_004955402:28,081,098...28,196,252 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO (PMID:15452145) MGI PMID:15452145 NCBI chrNW_004955523:2,128,529...2,210,737
Ensembl chrNW_004955523:2,128,529...2,210,737 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:22939626) UniProt PMID:22939626 NCBI chrNW_004955424:19,393,589...19,421,373
Ensembl chrNW_004955424:19,393,589...19,421,373 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO (PMID:22452336) UniProt PMID:22452336 NCBI chrNW_004955502:2,947,170...2,980,634
Ensembl chrNW_004955502:2,950,562...2,980,634 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in ISO (PMID:18448665) GO_Central PMID:18448665 NCBI chrNW_004955428:4,192,357...4,211,740
Ensembl chrNW_004955428:4,190,061...4,211,740 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) GO_Central PMID:19956673 NCBI chrNW_004955429:15,103,792...15,167,498 JBrowse link
G Rb1cc1 RB1 inducible coiled-coil 1 involved_in ISO (PMID:19225151), (PMID:23392225), (PMID:28890335)
(PMID:19258318)		 ComplexPortal
UniProt		 PMID:19225151 PMID:19258318 PMID:23392225 PMID:28890335 NCBI chrNW_004955454:12,201,566...12,257,383
Ensembl chrNW_004955454:12,200,750...12,257,389 		JBrowse link
G Rufy4 RUN and FYVE domain containing 4 involved_in ISO (PMID:26416964) UniProt PMID:26416964 NCBI chrNW_004955453:15,243,125...15,259,086
Ensembl chrNW_004955453:15,242,954...15,257,976 		JBrowse link
G Sting1 stimulator of interferon response cGAMP interactor 1 involved_in ISO (PMID:30568238), (PMID:30842662), (PMID:37535724) UniProt PMID:30568238 PMID:30842662 PMID:37535724 NCBI chrNW_004955418:1,091,022...1,097,064
Ensembl chrNW_004955418:1,083,613...1,100,448 		JBrowse link
G Stx12 syntaxin 12 involved_in ISO (PMID:24095276) ParkinsonsUK-UCL PMID:24095276 NCBI chrNW_004955452:6,977,813...7,015,281
Ensembl chrNW_004955452:6,977,101...7,015,281 		JBrowse link
G Synpo2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chrNW_004955428:21,152,210...21,323,254
Ensembl chrNW_004955428:21,154,277...21,360,960 		JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within ISO (PMID:23908015) MGI PMID:23908015 NCBI chrNW_004955422:17,768,469...17,778,976
Ensembl chrNW_004955422:17,768,469...17,779,003 		JBrowse link
G Tmem41b transmembrane protein 41B involved_in ISO (PMID:30093494), (PMID:30126924), (PMID:30933966) UniProt PMID:30093494 PMID:30126924 PMID:30933966 NCBI chrNW_004955414:25,063,497...25,082,901
Ensembl chrNW_004955414:25,061,400...25,083,663 		JBrowse link
G Tp53inp2 tumor protein p53 inducible nuclear protein 2 involved_in ISO (PMID:19056683) GO_Central PMID:19056683 NCBI chrNW_004955422:26,640,239...26,649,291
Ensembl chrNW_004955422:26,640,239...26,649,291 		JBrowse link
G Traf6 TNF receptor associated factor 6 involved_in ISO (PMID:23524951) UniProt PMID:23524951 NCBI chrNW_004955422:9,925,765...9,950,354
Ensembl chrNW_004955422:9,932,680...9,949,100 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004955419:11,151,751...11,168,046
Ensembl chrNW_004955419:11,151,751...11,168,041 		JBrowse link
G Ubqln1 ubiquilin 1 involved_in ISO (PMID:20529957) GO_Central PMID:20529957 NCBI chrNW_004955432:3,575,034...3,617,029
Ensembl chrNW_004955432:3,575,272...3,616,691 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 involved_in ISO (PMID:19225151), (PMID:28890335)
(PMID:19258318)		 UniProt
ComplexPortal		 PMID:19225151 PMID:19258318 PMID:28890335 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133 		JBrowse link
G Vmp1 vacuole membrane protein 1 involved_in ISO (PMID:30093494), (PMID:30933966)
(PMID:28890335)		 UniProt PMID:28890335 PMID:30093494 PMID:30933966 NCBI chrNW_004955451:3,265,109...3,370,610
Ensembl chrNW_004955451:3,265,109...3,370,610 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004955543:597,796...604,163
Ensembl chrNW_004955543:597,814...603,963 		JBrowse link
G Wdr45b WD repeat domain 45B involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004955506:515,364...556,507
Ensembl chrNW_004955506:515,327...560,075 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:28561066) UniProt PMID:28561066 NCBI chrNW_004955478:4,309,975...4,341,107
Ensembl chrNW_004955478:4,309,880...4,343,934 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in ISO (PMID:28890335)
(PMID:20505359), (PMID:28561066)		 UniProt PMID:20505359 PMID:28561066 PMID:28890335 NCBI chrNW_004955460:10,090,343...10,132,724
Ensembl chrNW_004955460:10,090,349...10,130,384 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004955460:14,774,545...14,860,783
Ensembl chrNW_004955460:14,774,545...14,802,879 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Becn1 beclin 1 acts_upstream_of_or_within ISO (PMID:27994061) MGI PMID:27994061 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004955437:396,736...411,144
Ensembl chrNW_004955437:396,742...411,144 		JBrowse link
G Fez1 fasciculation and elongation protein zeta 1 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955412:26,477,995...26,530,686
Ensembl chrNW_004955412:26,477,301...26,531,354 		JBrowse link
G Fez2 fasciculation and elongation protein zeta 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955441:4,421,936...4,456,070 JBrowse link
G Lrrk2 leucine rich repeat kinase 2 involved_in ISO (PMID:23916833) ParkinsonsUK-UCL PMID:23916833 NCBI chrNW_004955505:84,324...216,923
Ensembl chrNW_004955505:81,796...216,923 		JBrowse link
G Mtm1 myotubularin 1 acts_upstream_of_or_within ISO (PMID:23695157) MGI PMID:23695157 NCBI chrNW_004955498:6,329,402...6,444,708
Ensembl chrNW_004955498:6,329,275...6,445,169 		JBrowse link
G Nupr1 nuclear protein 1, transcriptional regulator involved_in ISO (PMID:20181828) UniProt PMID:20181828 NCBI chrNW_004955493:6,746,380...6,747,763
Ensembl chrNW_004955493:6,746,380...6,747,763 		JBrowse link
G Phf23 PHD finger protein 23 involved_in ISO (PMID:25484098) GO_Central PMID:25484098 NCBI chrNW_004955467:9,671,133...9,675,434
Ensembl chrNW_004955467:9,671,133...9,675,434 		JBrowse link
G Pink1 PTEN induced kinase 1 involved_in ISO (PMID:19279012) ParkinsonsUK-UCL PMID:19279012 NCBI chrNW_004955452:1,171,115...1,186,338
Ensembl chrNW_004955452:1,171,205...1,185,125 		JBrowse link
G Scfd1 sec1 family domain containing 1 involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004955409:29,805,909...29,903,208
Ensembl chrNW_004955409:29,805,909...29,903,208 		JBrowse link
G Sec22b SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chrNW_004955568:1,559,519...1,587,782
Ensembl chrNW_004955568:1,559,452...1,587,782 		JBrowse link
G Smcr8 SMCR8-C9orf72 complex subunit involved_in ISO (PMID:28195531) HGNC PMID:28195531 NCBI chrNW_004955478:11,002,174...11,015,123
Ensembl chrNW_004955478:11,002,174...11,015,123 		JBrowse link
G Tmem39a transmembrane protein 39A involved_in ISO (PMID:31806350) UniProt PMID:31806350 NCBI chrNW_004955427:19,118,631...19,184,315
Ensembl chrNW_004955427:19,133,434...19,184,344 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg2a autophagy related 2A involved_in ISO (PMID:30952800), (PMID:31271352) UniProt PMID:30952800 PMID:31271352 NCBI chrNW_004955422:20,261,749...20,290,879
Ensembl chrNW_004955422:20,271,330...20,291,875 		JBrowse link
G Atg7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004955429:14,076,976...14,301,034
Ensembl chrNW_004955429:14,076,960...14,304,236 		JBrowse link
G Becn1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chrNW_004955451:16,616,595...16,625,731
Ensembl chrNW_004955451:16,616,595...16,625,730 		JBrowse link
G Elapor1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in ISO (PMID:21072319) BHF-UCL PMID:21072319 NCBI chrNW_004955435:12,531,651...12,626,969
Ensembl chrNW_004955435:12,531,642...12,627,874 		JBrowse link
G Lrsam1 leucine rich repeat and sterile alpha motif containing 1 involved_in ISO (PMID:25484098) GO_Central PMID:25484098 NCBI chrNW_004955419:1,121,127...1,154,356
Ensembl chrNW_004955419:1,121,127...1,154,356 		JBrowse link
G Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955429:6,231,135...6,399,672
Ensembl chrNW_004955429:6,336,355...6,399,672 		JBrowse link
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955451:13,842,814...13,856,301
Ensembl chrNW_004955451:13,842,814...13,856,302 		JBrowse link
G Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955458:5,315,083...5,327,617
Ensembl chrNW_004955458:5,315,376...5,327,617 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955440:2,551,015...2,645,938
Ensembl chrNW_004955440:2,550,982...2,646,331 		JBrowse link
G Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in ISO (PMID:25495476) GO_Central PMID:25495476 NCBI chrNW_004955520:3,411,504...3,483,703
Ensembl chrNW_004955520:3,411,770...3,483,413 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in ISO (PMID:24056301) UniProt PMID:24056301 NCBI chrNW_004955459:9,533,081...9,574,464
Ensembl chrNW_004955459:9,531,538...9,574,766 		JBrowse link
G Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 involved_in ISO (PMID:21068542) UniProt PMID:21068542 NCBI chrNW_004955423:7,393,186...7,414,199
Ensembl chrNW_004955423:7,393,186...7,423,903 		JBrowse link
G Snx18 sorting nexin 18 involved_in ISO (PMID:29437695) UniProt PMID:29437695 NCBI chrNW_004955446:13,043,821...13,067,933
Ensembl chrNW_004955446:13,043,821...13,067,933 		JBrowse link
G Snx30 sorting nexin family member 30 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chrNW_004955419:14,567,317...14,645,442
Ensembl chrNW_004955419:14,567,317...14,619,637 		JBrowse link
G Snx4 sorting nexin 4 involved_in ISO (PMID:32513819), (PMID:33468622) UniProt PMID:32513819 PMID:33468622 NCBI chrNW_004955427:24,520,125...24,579,589
Ensembl chrNW_004955427:24,520,125...24,579,589 		JBrowse link
G Snx7 sorting nexin 7 involved_in ISO (PMID:32513819) UniProt PMID:32513819 NCBI chrNW_004955435:3,481,304...3,543,801
Ensembl chrNW_004955435:3,477,496...3,543,886 		JBrowse link
G Trim32 tripartite motif containing 32 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004955419:11,151,751...11,168,046
Ensembl chrNW_004955419:11,151,751...11,168,041 		JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chrNW_004955482:760,200...777,133
Ensembl chrNW_004955482:761,811...777,133 		JBrowse link
G Wdr45 WD repeat domain 45 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chrNW_004955543:597,796...604,163
Ensembl chrNW_004955543:597,814...603,963 		JBrowse link
G Wipi1 WD repeat domain, phosphoinositide interacting 1 involved_in ISO (PMID:31271352) UniProt PMID:31271352 NCBI chrNW_004955478:4,309,975...4,341,107
Ensembl chrNW_004955478:4,309,880...4,343,934 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chrNW_004955563:1,283,424...1,315,283
Ensembl chrNW_004955563:1,283,421...1,315,283 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581 		JBrowse link
G Atg5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chrNW_004955411:31,501,191...31,646,407
Ensembl chrNW_004955411:31,522,420...31,646,827 		JBrowse link
G Irgm immunity related GTPase M involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chrNW_004955408:2,338,510...2,344,566 JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chrNW_004955460:10,090,343...10,132,724
Ensembl chrNW_004955460:10,090,349...10,130,384 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip2 ARF interacting protein 2 involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955414:22,209,515...22,214,353
Ensembl chrNW_004955414:22,209,515...22,214,353 		JBrowse link
G Atg16l1 autophagy related 16 like 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:24954904)
(PMID:32960676)		 MGI
UniProt		 PMID:24954904 PMID:32960676 NCBI chrNW_004955453:2,884,497...2,917,581
Ensembl chrNW_004955453:2,880,928...2,917,581 		JBrowse link
G Atg4b autophagy related 4B cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955542:164,969...192,498
Ensembl chrNW_004955542:166,365...193,006 		JBrowse link
G Atg4d autophagy related 4D cysteine peptidase involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955495:1,739,982...1,746,362
Ensembl chrNW_004955495:1,739,982...1,746,362 		JBrowse link
G Lrba LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chrNW_004955471:5,052,535...5,649,696
Ensembl chrNW_004955471:5,053,487...5,649,476 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004955486:1,937,873...1,962,577
Ensembl chrNW_004955486:1,937,802...1,962,772 		JBrowse link
G Pacs2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004955538:3,559,738...3,616,862
Ensembl chrNW_004955538:3,559,724...3,619,649 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chrNW_004955402:28,081,150...28,195,305
Ensembl chrNW_004955402:28,081,098...28,196,252 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in ISO (PMID:32960676) UniProt PMID:32960676 NCBI chrNW_004955428:4,192,357...4,211,740
Ensembl chrNW_004955428:4,190,061...4,211,740 		JBrowse link
G Stx17 syntaxin 17 acts_upstream_of_or_within ISO (PMID:23455425) MGI PMID:23455425 NCBI chrNW_004955419:25,674,771...25,741,357
Ensembl chrNW_004955419:25,674,771...25,741,355 		JBrowse link
G Wipi2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:28561066)
(PMID:24954904)		 UniProt
MGI		 PMID:24954904 PMID:28561066 NCBI chrNW_004955460:10,090,343...10,132,724
Ensembl chrNW_004955460:10,090,349...10,130,384 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in ISO (PMID:27334615) UniProt PMID:27334615 NCBI chrNW_004955472:7,299,092...7,337,591
Ensembl chrNW_004955472:7,310,788...7,337,735 		JBrowse link
G Chek2 checkpoint kinase 2 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chrNW_004955455:2,969,113...3,008,004
Ensembl chrNW_004955455:2,969,270...3,003,173 		JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004955475:8,360,504...8,372,431
Ensembl chrNW_004955475:8,360,465...8,373,578 		JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445 		JBrowse link
G Ift20 intraflagellar transport 20 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751 		JBrowse link
G Ift88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122 		JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO (PMID:23524951) UniProt PMID:23524951 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chrNW_004955457:6,749,226...6,841,855
Ensembl chrNW_004955457:6,748,534...6,842,489 		JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO (PMID:20545908) UniProt PMID:20545908 NCBI chrNW_004955422:19,039,741...19,047,088
Ensembl chrNW_004955422:19,039,632...19,047,088 		JBrowse link
G Rnf186 ring finger protein 186 acts_upstream_of_positive_effect ISO (PMID:33280498) UniProt PMID:33280498 NCBI chrNW_004955452:433,413...450,261 JBrowse link
G Rnf5 ring finger protein 5 acts_upstream_of_or_within ISO (PMID:23093945) MGI PMID:23093945 NCBI chrNW_004955437:643,133...645,528
Ensembl chrNW_004955437:643,170...645,528 		JBrowse link
G Tbc1d14 TBC1 domain family member 14 involved_in ISO (PMID:22613832) BHF-UCL PMID:22613832 NCBI chrNW_004955514:3,485,975...3,553,840
Ensembl chrNW_004955514:3,485,841...3,567,377 		JBrowse link
G Ubqln2 ubiquilin 2 involved_in ISO (PMID:20529957) UniProt PMID:20529957 NCBI chrNW_004955475:3,260,209...3,263,586
Ensembl chrNW_004955475:3,260,503...3,262,380 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp13a2 ATPase cation transporting 13A2 involved_in ISO (PMID:22186024) RGD
ParkinsonsUK-UCL		 PMID:22186024 RGD:13442482 NCBI chrNW_004955527:1,805,854...1,823,623
Ensembl chrNW_004955527:1,806,009...1,823,344 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:25878248) UniProt PMID:25878248 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849 		JBrowse link
G Dnajc16 DnaJ heat shock protein family (Hsp40) member C16 involved_in ISO (PMID:32492081) UniProt PMID:32492081 NCBI chrNW_004955527:2,576,861...2,609,925
Ensembl chrNW_004955527:2,577,157...2,609,997 		JBrowse link
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Irgq immunity related GTPase Q involved_in ISO (PMID:39481378) UniProt PMID:39481378 NCBI chrNW_004955555:1,328,187...1,335,018
Ensembl chrNW_004955555:1,329,812...1,334,317 		JBrowse link
G Smurf1 SMAD specific E3 ubiquitin protein ligase 1 involved_in ISO (PMID:22020285) ParkinsonsUK-UCL PMID:22020285 NCBI chrNW_004955460:14,774,545...14,860,783
Ensembl chrNW_004955460:14,774,545...14,802,879 		JBrowse link
G Stbd1 starch binding domain 1 involved_in ISO (PMID:20810658)
(PMID:27358407)		 MGI PMID:20810658 PMID:27358407 NCBI chrNW_004955433:1,036,265...1,038,652 JBrowse link
G Tom1 target of myb1 membrane trafficking protein involved_in ISO (PMID:23023224) UniProt PMID:23023224 NCBI chrNW_004955405:43,091,632...43,115,016
Ensembl chrNW_004955405:43,091,633...43,115,016 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12619
    cellular process 12054
      process utilizing autophagic mechanism 462
        autophagy 462
          macroautophagy 289
            autophagosome organization 108
              autophagosome assembly + 99
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 12619
    cellular process 12054
      cellular component organization or biogenesis 5425
        cellular component organization 5295
          organelle organization 2900
            vacuole organization 193
              autophagosome organization 108
                autophagosome assembly + 99
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root