Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:autophagosome organization
go back to main search page
Accession:GO:1905037 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an autophagosome.
Synonyms:exact_synonym: autophagic vacuole organization
 related_synonym: initial autophagic vacuole organization


show annotations for term's descendants           Sort by:
autophagosome organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:15,929,613...15,955,631
Ensembl chr 1:16,986,385...17,006,033
Ensembl chr 1:16,986,385...17,006,033 		JBrowse link
G GBA1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:23707074) ARUK-UCL PMID:23707074 NCBI chr 1:130,579,300...130,589,560
Ensembl chr 1:134,185,385...134,194,851 		JBrowse link
G PIK3C2A phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha acts_upstream_of_or_within ISO (PMID:24098492) MGI PMID:24098492 NCBI chr11:17,143,024...17,263,920
Ensembl chr11:16,828,966...16,949,856 		JBrowse link
G PIK3C2B phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:180,024,889...180,096,287
Ensembl chr 1:184,313,233...184,384,454 		JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr15:23,519,311...23,620,532
Ensembl chr15:41,688,081...41,788,616 		JBrowse link
G ZFYVE26 zinc finger FYVE-type containing 26 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:48,326,517...48,396,486
Ensembl chr14:67,206,236...67,273,580 		JBrowse link
autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMBRA1 autophagy and beclin 1 regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:46,355,026...46,556,091
Ensembl chr11:46,905,454...47,103,205 		JBrowse link
G AP4M1 adaptor related protein complex 4 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:92,137,085...92,142,756
Ensembl chr 7:105,570,205...105,575,971 		JBrowse link
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:5,027,987...5,044,215
Ensembl chr 7:5,068,846...5,085,087 		JBrowse link
G ATG10 autophagy related 10 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:33,029,074...33,315,496
Ensembl chr 5:33,348,306...33,615,883 		JBrowse link
G ATG101 autophagy related 101 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr12:36,685,897...36,693,613
Ensembl chr12:37,462,533...37,470,062 		JBrowse link
G ATG12 autophagy related 12 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:111,184,617...111,196,038 JBrowse link
G ATG13 autophagy related 13 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:19211835) MGI
Ensembl
InterPro		 PMID:19211835 GO_REF:0000002 GO_REF:0000107 NCBI chr11:46,567,728...46,623,609
Ensembl chr11:47,126,380...47,182,850 		JBrowse link
G ATG14 autophagy related 14 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr14:35,953,228...35,998,650
Ensembl chr14:54,226,720...54,272,018 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:120,479,534...120,523,563
Ensembl chr2B:239,392,990...239,436,766 		JBrowse link
G ATG16L2 autophagy related 16 like 2 involved_in
NOT|involved_in		 IEA
ISO		 (PMID:22082872) Ensembl
UniProt
InterPro		 PMID:22082872 GO_REF:0000002 GO_REF:0000107 NCBI chr11:67,893,365...67,921,794
Ensembl chr11:71,115,768...71,131,081 		JBrowse link
G ATG2A autophagy related 2A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:60,251,169...60,273,831
Ensembl chr11:63,591,896...63,614,902 		JBrowse link
G ATG2B autophagy related 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:76,910,943...76,992,969
Ensembl chr14:96,237,825...96,314,881 		JBrowse link
G ATG3 autophagy related 3 involved_in
acts_upstream_of_or_within		 ISO (PMID:33446636)
(PMID:24747438)
(PMID:20723759)
(PMID:21220506)		 UniProt
MGI		 PMID:20723759 PMID:21220506 PMID:24747438 PMID:33446636 NCBI chr 3:109,681,163...109,710,835 JBrowse link
G ATG4A autophagy related 4A cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:97,189,556...97,253,371
Ensembl chr  X:107,559,639...107,623,389 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:128,913,323...128,950,112
Ensembl chr2B:247,702,880...247,738,977 		JBrowse link
G ATG4C autophagy related 4C cysteine peptidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:62,041,948...62,123,866
Ensembl chr 1:63,856,511...63,937,514 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:10,095,768...10,105,250
Ensembl chr19:10,758,544...10,767,712 		JBrowse link
G ATG5 autophagy related 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23704209) RGD
MGI
Ensembl		 PMID:16420522 PMID:23704209 GO_REF:0000107 RGD:1643189 NCBI chr 6:103,997,824...104,140,931
Ensembl chr 6:107,871,208...108,013,807 		JBrowse link
G ATG7 autophagy related 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23704209) Ensembl
TreeGrafter
MGI		 PMID:23704209 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:11,208,600...11,488,757
Ensembl chr 3:11,554,100...11,833,398 		JBrowse link
G ATG9A autophagy related 9A involved_in
acts_upstream_of_or_within		 IEA Ensembl GO_REF:0000107 NCBI chr2B:106,477,007...106,487,249
Ensembl chr2B:225,067,590...225,078,065 		JBrowse link
G ATG9B autophagy related 9B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 7:142,600,894...142,614,336
Ensembl chr 7:154,756,535...154,764,744 		JBrowse link
G ATP2A2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:107,857,009...107,924,938
Ensembl chr12:111,246,508...111,311,923 		JBrowse link
G BAG3 BAG cochaperone 3 involved_in ISO PMID:23434281 ARUK-UCL PMID:23434281 RGD:12793031 NCBI chr10:116,221,747...116,248,692
Ensembl chr10:119,643,963...119,665,964 		JBrowse link
G BECN1 beclin 1 involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl
UniProt		 PMID:16420522 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 RGD:1643189 NCBI chr17:14,493,619...14,507,809
Ensembl chr17:14,719,781...14,733,286 		JBrowse link
G BECN2 beclin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:217,520,628...217,522,177
Ensembl chr 1:222,499,853...222,501,148 		JBrowse link
G CTSD cathepsin D acts_upstream_of_or_within ISO (PMID:15452145) MGI PMID:15452145 NCBI chr11:1,789,326...1,800,524 JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:111,490,488...111,583,703
Ensembl chr 1:110,654,844...110,744,323 		JBrowse link
G EMC6 ER membrane protein complex subunit 6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:3,719,010...3,719,950
Ensembl chr17:3,715,811...3,716,143 		JBrowse link
G EPM2A EPM2A glucan phosphatase, laforin acts_upstream_of_or_within ISO (PMID:24430976) MGI PMID:24430976 NCBI chr 6:143,179,097...143,525,223 JBrowse link
G IRGM immunity related GTPase M involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:146,274,097...146,329,979
Ensembl chr 5:152,278,581...152,308,182 		JBrowse link
G LOC100989136 WD repeat domain phosphoinositide-interacting protein 3-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:24,663,180...24,665,836 JBrowse link
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:30,887,345...30,888,986
Ensembl chr20:32,010,284...32,020,411 		JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chr16:68,063,869...68,076,772 JBrowse link
G MTM1 myotubularin 1 acts_upstream_of ISO (PMID:23695157) MGI PMID:23695157 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381 		JBrowse link
G NSFL1C NSFL1 cofactor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:1,597,171...1,622,708
Ensembl chr20:1,364,008...1,389,548 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:85,935,807...86,035,935
Ensembl chr14:105,737,878...105,810,349 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 RGD
Ensembl
TreeGrafter		 PMID:12453151 GO_REF:0000107 GO_REF:0000118 RGD:2303129 NCBI chr18:35,203,896...35,336,512
Ensembl chr18:38,754,789...38,882,037 		JBrowse link
G PSEN1 presenilin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:65,149,922...65,193,305
Ensembl chr2A:66,274,809...66,318,290 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,634,017...61,642,945
Ensembl chr11:64,959,957...64,968,843 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:56,744,948...56,780,187
Ensembl chr 6:58,375,559...58,411,107 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:131,815,088...131,838,957
Ensembl chr 4:143,123,478...143,147,147 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in ISO (PMID:19956673) GO_Central PMID:19956673 NCBI chr 3:125,784,604...125,873,051 JBrowse link
G RB1CC1 RB1 inducible coiled-coil 1 involved_in IEA Ensembl
TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:49,046,830...49,138,795
Ensembl chr 8:46,430,131...46,521,722 		JBrowse link
G RUFY4 RUN and FYVE domain containing 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:105,331,522...105,353,934
Ensembl chr2B:223,932,041...223,952,939 		JBrowse link
G STING1 stimulator of interferon response cGAMP interactor 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:134,845,689...134,852,938
Ensembl chr 5:140,967,399...140,973,846 		JBrowse link
G STX12 syntaxin 12 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:27,035,807...27,086,825
Ensembl chr 1:28,076,625...28,130,032 		JBrowse link
G SYNPO2 synaptopodin 2 involved_in ISO PMID:23434281 UniProt PMID:23434281 RGD:12793031 NCBI chr 4:111,045,007...111,280,880
Ensembl chr 4:121,635,110...121,806,647 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr11:63,120,913...63,132,831
Ensembl chr11:66,429,435...66,441,327 		JBrowse link
G TMEM41B transmembrane protein 41B involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:9,410,997...9,445,831
Ensembl chr11:9,151,993...9,183,050 		JBrowse link
G TP53INP1 tumor protein p53 inducible nuclear protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:91,545,655...91,569,535
Ensembl chr 8:93,747,162...93,767,196 		JBrowse link
G TP53INP2 tumor protein p53 inducible nuclear protein 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr20:31,033,855...31,042,976
Ensembl chr20:32,160,155...32,169,227 		JBrowse link
G TRAF6 TNF receptor associated factor 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:36,457,633...36,483,616
Ensembl chr11:36,335,609...36,356,334 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:87,819,723...87,838,684
Ensembl chr 9:116,183,746...116,185,707 		JBrowse link
G UBQLN1 ubiquilin 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:41,170,416...41,218,656
Ensembl chr 9:82,597,507...82,645,587 		JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:48,829,844...48,835,040
Ensembl chr  X:56,981,985...56,983,859 		JBrowse link
G UBXN2A UBX domain protein 2A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:23,928,207...24,003,550
Ensembl chr2A:24,038,567...24,097,309 		JBrowse link
G UBXN2B UBX domain protein 2B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:54,865,251...54,905,243
Ensembl chr 8:56,516,601...56,556,489 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:129,549,399...129,579,087 JBrowse link
G ULK2 unc-51 like autophagy activating kinase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:31,262,168...31,362,251
Ensembl chr17:36,409,312...36,507,786 		JBrowse link
G ULK3 unc-51 like kinase 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:53,778,676...53,785,754
Ensembl chr15:73,396,341...73,403,362 		JBrowse link
G VMP1 vacuole membrane protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:53,773,215...53,907,992
Ensembl chr17:58,639,423...58,745,855 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:41,372,722...41,400,441
Ensembl chr  X:49,224,864...49,233,960 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:77,028,543...77,058,075
Ensembl chr17:82,829,546...82,863,803 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:62,357,952...62,394,620
Ensembl chr17:67,748,201...67,784,389 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:5,446,621...5,488,170
Ensembl chr 7:5,467,334...5,510,538 		JBrowse link
engulfment of target by autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:90,995,923...91,112,240
Ensembl chr 7:104,500,965...104,568,046 		JBrowse link
negative regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BECN1 beclin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr17:14,493,619...14,507,809
Ensembl chr17:14,719,781...14,733,286 		JBrowse link
G EHMT2 euchromatic histone lysine methyltransferase 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 6:31,542,946...31,560,894
Ensembl chr 6:32,429,271...32,451,844 		JBrowse link
G FEZ1 fasciculation and elongation protein zeta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:120,272,187...120,322,600
Ensembl chr11:124,182,901...124,236,403 		JBrowse link
G FEZ2 fasciculation and elongation protein zeta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:36,581,436...36,628,054
Ensembl chr2A:37,344,973...37,390,525 		JBrowse link
G LRRK2 leucine rich repeat kinase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:48,343,621...48,488,337
Ensembl chr12:49,205,930...49,350,462 		JBrowse link
G MTM1 myotubularin 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23695157) MGI
TreeGrafter		 PMID:23695157 GO_REF:0000118 NCBI chr  X:140,218,742...140,323,495
Ensembl chr  X:150,174,758...150,255,381 		JBrowse link
G NUPR1 nuclear protein 1, transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 Ensembl chr16:29,015,155...29,016,987 JBrowse link
G PHF23 PHD finger protein 23 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:7,264,944...7,269,549
Ensembl chr17:7,252,024...7,256,756 		JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,583,330...19,601,248
Ensembl chr 1:20,627,693...20,645,560 		JBrowse link
G SCFD1 sec1 family domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:11,401,378...11,508,418
Ensembl chr14:29,602,241...29,709,133 		JBrowse link
G SEC22B SEC22 homolog B, vesicle trafficking protein involved_in ISO (PMID:21242315) UniProt PMID:21242315 NCBI chr 1:82,383,313...82,404,612 JBrowse link
G SMCR8 SMCR8-C9orf72 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:32,858,205...32,871,132
Ensembl chr17:37,884,037...37,896,972 		JBrowse link
G TMEM39A transmembrane protein 39A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:116,549,308...116,586,260
Ensembl chr 3:123,461,860...123,498,656 		JBrowse link
positive regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG2A autophagy related 2A involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:60,251,169...60,273,831
Ensembl chr11:63,591,896...63,614,902 		JBrowse link
G ATG7 autophagy related 7 ISO RGD PMID:33372336 RGD:407571673 NCBI chr 3:11,208,600...11,488,757
Ensembl chr 3:11,554,100...11,833,398 		JBrowse link
G BECN1 beclin 1 ISO RGD PMID:25561470 RGD:11561937 NCBI chr17:14,493,619...14,507,809
Ensembl chr17:14,719,781...14,733,286 		JBrowse link
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:111,490,488...111,583,703
Ensembl chr 1:110,654,844...110,744,323 		JBrowse link
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:98,571,796...98,623,581
Ensembl chr 9:127,245,508...127,297,645 		JBrowse link
G MOAP1 modulator of apoptosis 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:73,814,859...73,817,607
Ensembl chr14:93,152,551...93,153,606 		JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha involved_in ISO (PMID:25578879) ParkinsonsUK-UCL PMID:25578879 NCBI chr10:22,691,355...22,870,628 JBrowse link
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:18,471,609...18,507,916
Ensembl chr17:18,746,712...18,782,296 		JBrowse link
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:31,323,346...31,335,626
Ensembl chr12:31,584,534...31,594,808 		JBrowse link
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:24,692,363...24,810,685
Ensembl chr2B:139,125,375...139,242,721 		JBrowse link
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:195,720,895...195,842,619
Ensembl chr 1:200,757,097...200,878,819 		JBrowse link
G RALB RAS like proto-oncogene B involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:7,185,192...7,227,220
Ensembl chr2B:120,748,123...120,802,698 		JBrowse link
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:119,224,304...119,267,986
Ensembl chr 1:88,077,420...88,121,056 		JBrowse link
G SNX18 sorting nexin 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:59,270,053...59,508,359
Ensembl chr 5:61,101,056...61,129,397 		JBrowse link
G SNX30 sorting nexin family member 30 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:83,878,128...83,997,124
Ensembl chr 9:112,031,860...112,143,933 		JBrowse link
G SNX4 sorting nexin 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:122,578,527...122,652,007
Ensembl chr 3:129,443,369...129,515,917 		JBrowse link
G SNX7 sorting nexin 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:101,314,484...101,417,388
Ensembl chr 1:100,037,161...100,138,877 		JBrowse link
G TRIM32 tripartite motif containing 32 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:87,819,723...87,838,684
Ensembl chr 9:116,183,746...116,185,707 		JBrowse link
G ULK1 unc-51 like autophagy activating kinase 1 ISO RGD PMID:23448468 RGD:13208863 NCBI chr12:129,549,399...129,579,087 JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:41,372,722...41,400,441
Ensembl chr  X:49,224,864...49,233,960 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:62,357,952...62,394,620
Ensembl chr17:67,748,201...67,784,389 		JBrowse link
positive regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ELAVL1 ELAV like RNA binding protein 1 ISO RGD PMID:33372336 RGD:407571673 NCBI chr19:7,259,829...7,306,808
Ensembl chr19:8,114,849...8,147,137 		JBrowse link
protein lipidation involved in autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG16L1 autophagy related 16 like 1 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr2B:120,479,534...120,523,563
Ensembl chr2B:239,392,990...239,436,766 		JBrowse link
G ATG5 autophagy related 5 acts_upstream_of_or_within ISO (PMID:23918802) MGI PMID:23918802 NCBI chr 6:103,997,824...104,140,931
Ensembl chr 6:107,871,208...108,013,807 		JBrowse link
G IRGM immunity related GTPase M involved_in ISO (PMID:28389568) UniProt PMID:28389568 NCBI chr 5:146,274,097...146,329,979
Ensembl chr 5:152,278,581...152,308,182 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within ISO (PMID:24954904) MGI PMID:24954904 NCBI chr 7:5,446,621...5,488,170
Ensembl chr 7:5,467,334...5,510,538 		JBrowse link
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFIP2 ARF interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,608,393...6,613,245
Ensembl chr11:6,290,034...6,296,817 		JBrowse link
G ATG13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:46,567,728...46,623,609
Ensembl chr11:47,126,380...47,182,850 		JBrowse link
G ATG16L1 autophagy related 16 like 1 acts_upstream_of_or_within
involved_in		 IEA Ensembl GO_REF:0000107 NCBI chr2B:120,479,534...120,523,563
Ensembl chr2B:239,392,990...239,436,766 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:128,913,323...128,950,112
Ensembl chr2B:247,702,880...247,738,977 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:10,095,768...10,105,250
Ensembl chr19:10,758,544...10,767,712 		JBrowse link
G ATG9A autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:106,477,007...106,487,249
Ensembl chr2B:225,067,590...225,078,065 		JBrowse link
G ATG9B autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:142,600,894...142,614,336
Ensembl chr 7:154,756,535...154,764,744 		JBrowse link
G LRBA LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr 4:142,597,002...143,388,115
Ensembl chr 4:154,247,287...155,006,875 		JBrowse link
G MFN2 mitofusin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 1:10,729,933...10,764,865
Ensembl chr 1:11,945,880...11,981,077 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr14:85,935,807...86,035,935
Ensembl chr14:105,737,878...105,810,349 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr18:35,203,896...35,336,512
Ensembl chr18:38,754,789...38,882,037 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:131,815,088...131,838,957
Ensembl chr 4:143,123,478...143,147,147 		JBrowse link
G STX17 syntaxin 17 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chr 9:70,989,913...71,058,374
Ensembl chr 9:99,107,243...99,168,801 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24954904) MGI
Ensembl		 PMID:24954904 GO_REF:0000107 NCBI chr 7:5,446,621...5,488,170
Ensembl chr 7:5,467,334...5,510,538 		JBrowse link
regulation of autophagosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C9orf72 C9orf72-SMCR8 complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:27,395,054...27,422,282
Ensembl chr 9:28,001,813...28,022,066 		JBrowse link
G CHEK2 checkpoint kinase 2 involved_in ISO (PMID:37943659) UniProt PMID:37943659 NCBI chr22:9,757,038...9,811,171 JBrowse link
G EFNB1 ephrin B1 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr  X:58,075,744...58,088,838
Ensembl chr  X:68,139,078...68,152,131 		JBrowse link
G EPHB2 EPH receptor B2 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr 1:21,895,961...22,107,649
Ensembl chr 1:22,912,570...23,047,118 		JBrowse link
G IFT20 intraflagellar transport 20 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:28,438,960...28,446,113
Ensembl chr17:28,941,303...28,948,129 		JBrowse link
G IFT88 intraflagellar transport 88 involved_in ISO (PMID:24089209) UniProt PMID:24089209 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204 		JBrowse link
G MTMR3 myotubularin related protein 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:10,925,275...11,072,554
Ensembl chr22:28,818,273...28,872,982 		JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:9,871,700...10,028,704
Ensembl chr 1:11,093,765...11,249,841 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:95,505,376...95,597,792
Ensembl chr2B:213,628,997...213,721,299 		JBrowse link
G RAB1B RAB1B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,634,017...61,642,945
Ensembl chr11:64,959,957...64,968,843 		JBrowse link
G RNF186 ring finger protein 186 acts_upstream_of_positive_effect IEA Ensembl GO_REF:0000107 NCBI chr 1:18,770,083...18,772,399
Ensembl chr 1:19,813,784...19,814,467 		JBrowse link
G RNF5 ring finger protein 5 acts_upstream_of_or_within ISO (PMID:23093945) MGI PMID:23093945 NCBI chr 6:31,825,799...31,828,188 JBrowse link
G TBC1D14 TBC1 domain family member 14 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 4:6,978,787...7,100,472 JBrowse link
G UBQLN2 ubiquilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:48,829,844...48,835,040
Ensembl chr  X:56,981,985...56,983,859 		JBrowse link
regulation of autophagosome size term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP13A2 ATPase cation transporting 13A2 involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:22186024 GO_REF:0000107 GO_REF:0000118 RGD:13442482 NCBI chr 1:15,929,613...15,955,631
Ensembl chr 1:16,986,385...17,006,033
Ensembl chr 1:16,986,385...17,006,033 		JBrowse link
G DNAJC16 DnaJ heat shock protein family (Hsp40) member C16 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:14,664,286...14,710,171
Ensembl chr 1:15,659,107...15,707,329 		JBrowse link
G LOC117978823 battenin involved_in ISO (PMID:25878248) UniProt PMID:25878248
substrate localization to autophagosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IRGQ immunity related GTPase Q involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:40,533,711...40,538,157
Ensembl chr19:49,141,775...49,146,061 		JBrowse link
G RETREG1 reticulophagy regulator 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 5:16,774,596...16,920,948 JBrowse link
G RETREG2 reticulophagy regulator family member 2 involved_in IEA GOC GO_REF:0000108 NCBI chr2B:106,435,938...106,441,428
Ensembl chr2B:225,028,498...225,034,024 		JBrowse link
G RETREG3 reticulophagy regulator family member 3 involved_in IEA GOC GO_REF:0000108 NCBI chr17:14,707,649...14,737,027
Ensembl chr17:14,931,260...14,958,511 		JBrowse link
G SMURF1 SMAD specific E3 ubiquitin protein ligase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:90,995,923...91,112,240
Ensembl chr 7:104,500,965...104,568,046 		JBrowse link
G STBD1 starch binding domain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:47,889,830...47,894,943
Ensembl chr 4:53,729,242...53,734,492 		JBrowse link
G TOM1 target of myb1 membrane trafficking protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:16,306,575...16,355,442
Ensembl chr22:34,150,256...34,198,939 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19315
    cellular process 18871
      process utilizing autophagic mechanism 527
        autophagy 527
          macroautophagy 324
            autophagosome organization 122
              autophagosome assembly + 113
              autophagosome membrane disassembly 0
              regulation of autophagosome size + 4
Path 2
Term Annotations click to browse term
  biological_process 19315
    cellular process 18871
      cellular component organization or biogenesis 8571
        cellular component organization 8365
          organelle organization 3516
            vacuole organization 224
              autophagosome organization 122
                autophagosome assembly + 113
                autophagosome membrane disassembly 0
                regulation of autophagosome size + 4
paths to the root