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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of glycoprotein metabolic process
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Accession:GO:1903018 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of glycoprotein metabolic process.
Comment:human serum amyloid P component (SAP) P02743 inhibits viral neuraminidase, NA (exo-alpha-sialidase activity) and thus the metabolism of glycoproteins, demonstrated in Figure 4A PMID:23544079, (IDA), the negative regulation term would be applied to this protein
Synonyms:exact_synonym: regulation of glycoprotein metabolism



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negative regulation by host of viral glycoprotein metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apcs amyloid P component, serum involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr13:85,373,219...85,374,195 JBrowse link
G Ptx3 pentraxin 3 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:152,797,563...152,803,372 JBrowse link
negative regulation of amyloid precursor protein biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aatf apoptosis antagonizing transcription factor acts_upstream_of_or_within ISO (PMID:14627703) RGD PMID:14627703 NCBI chr10:69,299,029...69,392,207 JBrowse link
G Abca7 ATP binding cassette subfamily A member 7 involved_in ISS
ISO
GO_REF:0000024
(PMID:18429932)
Alzheimers_University_of_Toronto
RGD
PMID:18429932 GO_REF:0000024 NCBI chr 7:9,691,452...9,711,466 JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in IMP PMID:20395292 ARUK-UCL PMID:20395292 RGD:14390059 NCBI chr 7:106,907,209...106,994,124 JBrowse link
G Bace2 beta-secretase 2 involved_in ISO
ISS
(PMID:12801932)
GO_REF:0000024
RGD
UniProt
PMID:12801932 GO_REF:0000024 NCBI chr11:36,707,447...36,789,550 JBrowse link
G Itm2b integral membrane protein 2B involved_in ISO
IBA
IEA
ISS
(PMID:16027166), (PMID:18524908)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:16027166 PMID:18524908 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr15:48,545,998...48,568,904 JBrowse link
G Itm2c integral membrane protein 2C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:93,993,922...94,007,737 JBrowse link
G Mir106a microRNA 106a involved_in ISO (PMID:18684319) RGD PMID:18684319 NCBI chr  X:132,422,584...132,422,661 JBrowse link
G Mir144 microRNA 144 involved_in ISO (PMID:27329039) RGD PMID:27329039 NCBI chr10:62,961,348...62,961,430 JBrowse link
G Mir153 microRNA 153 involved_in ISO (PMID:21982160) RGD PMID:21982160 NCBI chr 6:138,163,595...138,163,681 JBrowse link
G Mir17 microRNA 17 involved_in ISO (PMID:21982160) RGD PMID:21982160 NCBI chr15:92,180,629...92,180,712 JBrowse link
G Mir20a microRNA 20a involved_in ISO (PMID:21982160) RGD PMID:21982160 NCBI chr15:92,181,084...92,181,168 JBrowse link
G Mir298 microRNA 298 involved_in ISO (PMID:31942037) RGD PMID:31942037 NCBI chr 3:163,052,291...163,052,372 JBrowse link
G Mir31 microRNA 31 involved_in ISO UniProtKB:P05067 (PMID:32069773) RGD PMID:32069773 NCBI chr 5:103,599,038...103,599,143 JBrowse link
G Mir323 microRNA 323 involved_in ISO (PMID:21982160) RGD PMID:21982160 NCBI chr 6:128,725,539...128,725,624 JBrowse link
G Mir455 microRNA 455 involved_in ISO (PMID:31181293) RGD PMID:31181293 NCBI chr 5:76,689,313...76,689,390 JBrowse link
negative regulation of CD4 production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot8 acyl-CoA thioesterase 8 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:9153233)
UniProt
Ensembl
RGD
PMID:9153233 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:153,531,192...153,542,851 JBrowse link
negative regulation of elastin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hbegf heparin-binding EGF-like growth factor involved_in IDA PMID:12882762 UniProt PMID:12882762 RGD:8554842 NCBI chr18:28,380,337...28,390,220 JBrowse link
negative regulation of elastin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst3 cystatin C involved_in ISO (PMID:10545518) RGD PMID:10545518 NCBI chr 3:136,336,923...136,340,796 JBrowse link
negative regulation of FasL production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jak3 Janus kinase 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:9498750)
BHF-UCL
RGD
PMID:9498750 GO_REF:0000024 NCBI chr16:18,418,807...18,432,515 JBrowse link
negative regulation of glycoprotein biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir144 microRNA 144 acts_upstream_of ISO (PMID:27785072) RGD PMID:27785072 NCBI chr10:62,961,348...62,961,430 JBrowse link
negative regulation of glycoprotein metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apcs amyloid P component, serum involved_in ISO (PMID:23544079) RGD PMID:23544079 NCBI chr13:85,373,219...85,374,195 JBrowse link
G Ptx3 pentraxin 3 involved_in ISO (PMID:23544079) RGD PMID:23544079 NCBI chr 2:152,797,563...152,803,372 JBrowse link
negative regulation of protein glycosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mgat4d MGAT4 family, member D involved_in ISO (PMID:20805325) RGD PMID:20805325 NCBI chr19:24,740,068...24,777,012 JBrowse link
G Oga O-GlcNAcase IMP RGD PMID:16332679 RGD:2305959 NCBI chr 1:254,547,311...254,589,596 JBrowse link
negative regulation of proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within ISO (PMID:16550171) RGD PMID:16550171 NCBI chr 3:174,659,683...174,671,978 JBrowse link
positive regulation of amyloid precursor protein biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 involved_in ISO
IEA
(PMID:20704561)
GO_REF:0000107
RGD
Ensembl
PMID:20704561 GO_REF:0000107 NCBI chr 3:28,642,660...28,662,689 JBrowse link
G Ncstn nicastrin acts_upstream_of_or_within ISO (PMID:23826707) RGD PMID:23826707 NCBI chr13:87,062,827...87,078,839 JBrowse link
G Pawr pro-apoptotic WT1 regulator acts_upstream_of_or_within ISO (PMID:14627703) RGD PMID:14627703 NCBI chr 7:45,531,480...45,611,492 JBrowse link
G Soat1 sterol O-acyltransferase 1 involved_in ISO
IEA
(PMID:17412327)
GO_REF:0000107
RGD
Ensembl
PMID:17412327 GO_REF:0000107 NCBI chr13:68,552,274...68,597,529 JBrowse link
positive regulation of CD24 production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plcb1 phospholipase C beta 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:15849202)
BHF-UCL
Ensembl
RGD
PMID:15849202 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:122,059,988...122,772,896 JBrowse link
positive regulation of CD80 production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il33 interleukin 33 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:26936882)
Ensembl
RGD
PMID:26936882 GO_REF:0000107 NCBI chr 1:227,701,964...227,736,374 JBrowse link
positive regulation of CD86 production term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il33 interleukin 33 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:26936882)
Ensembl
RGD
PMID:26936882 GO_REF:0000107 NCBI chr 1:227,701,964...227,736,374 JBrowse link
positive regulation of glycoprotein biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl19 C-C motif chemokine ligand 19 involved_in ISO (PMID:15845453) RGD PMID:15845453 NCBI chr 5:56,963,364...56,965,308 JBrowse link
G Ccl21 C-C motif chemokine ligand 21 involved_in ISO (PMID:15845453) RGD PMID:15845453 NCBI chr 5:56,980,557...56,981,661 JBrowse link
G Ep300 E1A binding protein p300 IMP fibronectin RGD PMID:17065349 RGD:2312275 NCBI chr 7:114,987,857...115,058,652 JBrowse link
G Igf1 insulin-like growth factor 1 involved_in ISO
IEA
(PMID:9564845)
GO_REF:0000107
RGD
Ensembl
PMID:9564845 GO_REF:0000107 NCBI chr 7:24,169,608...24,249,446 JBrowse link
G Insr insulin receptor IMP P-glycoprotein RGD PMID:19049803 RGD:2307019 NCBI chr12:5,991,135...6,129,275 JBrowse link
positive regulation of glycoprotein biosynthetic process involved in immunological synapse formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccr7 C-C motif chemokine receptor 7 involved_in ISO (PMID:15845453) RGD PMID:15845453 NCBI chr10:84,098,193...84,108,309 JBrowse link
positive regulation of glycoprotein metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab1a RAB1A, member RAS oncogene family involved_in ISO UniProtKB:Q9H0U4 (PMID:21680502) RGD PMID:21680502 NCBI chr14:98,623,582...98,648,766 JBrowse link
G Rab1b RAB1B, member RAS oncogene family involved_in ISO UniProtKB:P62820 (PMID:21680502) RGD PMID:21680502 NCBI chr 1:202,405,759...202,413,850 JBrowse link
positive regulation of heparan sulfate proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in ISO
IEA
ISS
(PMID:15853773)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:15853773 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661 JBrowse link
G Pxylp1 2-phosphoxylose phosphatase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:24425863)
UniProt
RGD
PMID:24425863 GO_REF:0000024 NCBI chr 8:97,419,766...97,485,163 JBrowse link
G Tcf7l2 transcription factor 7 like 2 involved_in ISO (PMID:15853773) RGD PMID:15853773 NCBI chr 1:264,791,335...264,984,225 JBrowse link
positive regulation of protein glycosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chp1 calcineurin-like EF-hand protein 1 involved_in IDA PMID:21543739 UniProt PMID:21543739 RGD:8554239 NCBI chr 3:126,989,800...127,025,071 JBrowse link
G Golga2 golgin A2 involved_in ISO (PMID:22735382) RGD PMID:22735382 NCBI chr 3:15,583,862...15,604,279 JBrowse link
G Ramp1 receptor activity modifying protein 1 involved_in ISO
IEA
(PMID:9620797)
GO_REF:0000107
RGD
Ensembl
PMID:9620797 GO_REF:0000107 NCBI chr 9:99,213,031...99,263,696 JBrowse link
G Slc51b SLC51 subunit beta involved_in ISO (PMID:22535958) RGD PMID:22535958 NCBI chr 8:65,931,891...65,939,953 JBrowse link
positive regulation of protein O-linked glycosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il15 interleukin 15 acts_upstream_of_or_within ISO (PMID:24509081) RGD PMID:24509081 NCBI chr19:42,536,160...42,611,349 JBrowse link
G Pomt1 protein-O-mannosyltransferase 1 IDA RGD PMID:16704966 RGD:11532759 NCBI chr 3:15,520,717...15,538,579 JBrowse link
G Pomt2 protein-O-mannosyltransferase 2 IDA RGD PMID:16704966 RGD:11532759 NCBI chr 6:106,755,462...106,794,849 JBrowse link
positive regulation of proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mustn1 musculoskeletal, embryonic nuclear protein 1 acts_upstream_of_or_within ISO (PMID:19410023) RGD PMID:19410023 NCBI chr16:6,072,908...6,075,161 JBrowse link
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within ISO (PMID:16550171) RGD PMID:16550171 NCBI chr 3:174,659,683...174,671,978 JBrowse link
regulation of amyloid precursor protein biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Necab1 N-terminal EF-hand calcium binding protein 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:28,357,859...28,578,642 JBrowse link
G Necab2 N-terminal EF-hand calcium binding protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:47,501,351...47,527,722 JBrowse link
regulation of glycoprotein biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857134 (PMID:15292044)
Ensembl
RGD
PMID:15292044 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900 JBrowse link
G Gata1 GATA binding protein 1 involved_in ISO (PMID:15701726) RGD PMID:15701726 NCBI chr  X:14,529,706...14,537,530 JBrowse link
regulation of heparan sulfate proteoglycan biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tm9sf2 transmembrane 9 superfamily member 2 involved_in ISO (PMID:28404855) RGD PMID:28404855 NCBI chr15:105,606,082...105,660,715 JBrowse link
regulation of protein glycosylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca2 ATP binding cassette subfamily A member 2 involved_in ISO (PMID:22086926) RGD PMID:22086926 NCBI chr 3:28,642,660...28,662,689 JBrowse link
G Acer2 alkaline ceramidase 2 involved_in ISO (PMID:20089856) RGD PMID:20089856 NCBI chr 5:101,391,830...101,442,615 JBrowse link
G Ccdc134 coiled-coil domain containing 134 involved_in ISS
ISO
GO_REF:0000024
(PMID:39509507)
UniProt
RGD
PMID:39509507 GO_REF:0000024 NCBI chr 7:113,644,557...113,659,050 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    cellular process 19523
      metabolic process 12157
        carbohydrate derivative metabolic process 1048
          glycoprotein metabolic process 391
            regulation of glycoprotein metabolic process 56
              negative regulation of glycoprotein metabolic process + 24
              positive regulation of glycoprotein metabolic process + 26
              regulation of elastin catabolic process + 1
              regulation of glycoprotein biosynthetic process + 51
Path 2
Term Annotations click to browse term
  biological_process 20534
    biological regulation 13821
      regulation of biological process 13375
        regulation of cellular process 13013
          regulation of metabolic process 6834
            regulation of macromolecule metabolic process 6302
              regulation of protein metabolic process 2024
                regulation of glycoprotein metabolic process 56
                  negative regulation of glycoprotein metabolic process + 24
                  positive regulation of glycoprotein metabolic process + 26
                  regulation of elastin catabolic process + 1
                  regulation of glycoprotein biosynthetic process + 51
paths to the root