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ONTOLOGY REPORT - ANNOTATIONS

Term:visual system development
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Accession:GO:0150063 term browser browse the term
Definition:The process whose specific outcome is the progression of the visual system over time, from its formation to the mature structure, including the eye, parts of the central nervous system (CNS) involved in processing of visual inputs, and connecting nerve pathways.
Synonyms:related_synonym: optic pathway development;   visual pathway development


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visual system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2ry12 purinergic receptor P2Y12 involved_in ISO UniProtKB:Q9Z0D9 (PMID:26948129) RGD PMID:26948129 NCBI chr 2:145,631,487...145,673,194
Ensembl chr 2:143,481,430...143,523,361 		JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH-like homeobox 2 acts_upstream_of_or_within ISO
IEA		 (PMID:14998930)
GO_REF:0000107		 RGD
Ensembl		 PMID:14998930 GO_REF:0000107 NCBI chr14:3,485,309...3,490,206
Ensembl chr14:3,340,465...3,345,353 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:102,402,622...102,405,732
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Foxn4 forkhead box N4 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:15363391)
GO_REF:0000107
MGI:3054789 (PMID:15363391)		 RGD
Ensembl		 PMID:15363391 GO_REF:0000107 NCBI chr12:47,997,308...48,020,526
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of IEA
ISO		 GO_REF:0000107
(PMID:15976303)		 Ensembl
RGD		 PMID:15976303 GO_REF:0000107 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO
IEA		 MGI:2149672 (PMID:16038893)
GO_REF:0000107		 RGD
Ensembl		 PMID:16038893 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:90,468,696...90,556,522
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO (PMID:20459797) RGD PMID:20459797 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:11861467)		 UniProt
RGD		 PMID:11861467 GO_REF:0000024 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod4 neuronal differentiation 4 involved_in ISO
IEA		 (PMID:11861467)
GO_REF:0000107		 RGD
Ensembl		 PMID:11861467 GO_REF:0000107 NCBI chr 7:7,740,852...7,828,052
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:3701996 (PMID:17301087)
(PMID:17075007)		 UniProt
Ensembl
RGD		 PMID:17075007 PMID:17301087 GO_REF:0000024 GO_REF:0000107 NCBI chr17:86,959,621...86,961,475
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO		 GO_REF:0000024
(PMID:23652001)		 UniProt
RGD		 PMID:23652001 GO_REF:0000024 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of ISO
IEA		 (PMID:18973577)
GO_REF:0000107		 RGD
Ensembl		 PMID:18973577 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:165,791,101...165,808,669
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 acts_upstream_of_or_within ISO MGI:3526871 (PMID:15572692) RGD PMID:15572692 NCBI chr 9:69,321,072...69,490,630
Ensembl chr 9:61,827,139...61,905,699 		JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (PMID:10973493) RGD PMID:10973493 NCBI chr 6:57,961,423...57,998,901
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA		 MGI:1857891|MGI:2180721 (PMID:15366004), (PMID:16368932)
GO_REF:0000107		 RGD
Ensembl		 PMID:15366004 PMID:16368932 GO_REF:0000107 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Arhgap35 Rho GTPase activating protein 35 acts_upstream_of_or_within ISO
IEA		 MGI:2448591 (PMID:11044403)
GO_REF:0000107		 RGD
Ensembl		 PMID:11044403 GO_REF:0000107 NCBI chr 1:86,330,566...86,447,414
Ensembl chr 1:77,202,436...77,319,298 		JBrowse link
G B3glct beta 3-glucosyltransferase acts_upstream_of_or_within ISO (PMID:31600785) RGD PMID:31600785 NCBI chr12:5,255,521...5,346,807
Ensembl chr12:5,255,740...5,346,810 		JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within ISO MGI:5301332 (PMID:22179047) RGD PMID:22179047 NCBI chr10:46,685,410...46,698,580
Ensembl chr10:46,186,691...46,196,008 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857137|MGI:2137520 (PMID:14681194), (PMID:9268572)
GO_REF:0000107		 RGD
Ensembl		 PMID:9268572 PMID:14681194 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1338938 (PMID:15673568)		 Ensembl
RGD		 PMID:15673568 GO_REF:0000107 NCBI chr 2:233,211,525...233,544,344
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO (PMID:15454078) RGD PMID:15454078 NCBI chr 4:153,431,169...154,051,932
Ensembl chr 4:151,764,138...152,379,648 		JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO
IEA		 MGI:5708063 (PMID:24947469)
GO_REF:0000107		 RGD
Ensembl		 PMID:24947469 GO_REF:0000107 NCBI chr14:71,563,835...71,648,352
Ensembl chr14:67,351,353...67,435,949 		JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1933758|MGI:3840687 (PMID:19276117)		 Ensembl
RGD		 PMID:19276117 GO_REF:0000107 NCBI chr 1:208,084,801...208,087,680
Ensembl chr 1:198,655,407...198,658,048 		JBrowse link
G Cep290 centrosomal protein 290 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:37,196,765...37,285,955
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:3588650 (PMID:16207732)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207732 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1916503 (PMID:12546709) RGD PMID:12546709 NCBI chr20:9,784,872...9,788,656
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO
IEA		 MGI:88515 (PMID:12546709)
GO_REF:0000107		 RGD
Ensembl		 PMID:12546709 GO_REF:0000107 NCBI chr 8:59,989,885...59,995,532
Ensembl chr 8:51,093,441...51,099,157 		JBrowse link
G Cryba1 crystallin, beta A1 acts_upstream_of_or_within ISO MGI:1857969 (PMID:10585769) RGD PMID:10585769 NCBI chr10:63,106,465...63,113,020
Ensembl chr10:62,608,383...62,614,726 		JBrowse link
G Cryba4 crystallin, beta A4 involved_in ISO
IEA		 (PMID:16960806)
GO_REF:0000107		 RGD
Ensembl		 PMID:16960806 GO_REF:0000107 NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221 		JBrowse link
G Crybb2 crystallin, beta B2 acts_upstream_of_or_within IEP
IEA
ISO		 GO_REF:0000107
MGI:2137511 (PMID:11381063)		 Ensembl
RGD		 PMID:11381063 PMID:8706714 GO_REF:0000107, RGD:1298813 NCBI chr12:49,230,192...49,240,116
Ensembl chr12:43,569,747...43,579,671 		JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (PMID:11773036) RGD PMID:11773036 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626 		JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:15967433 RGD:2306661 NCBI chr 8:66,991,940...66,998,014
Ensembl chr 8:58,096,077...58,102,125 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25406291)		 Ensembl
RGD		 PMID:25406291 GO_REF:0000107 NCBI chr14:106,811,769...106,890,961
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO
IEA		 MGI:2662293 (PMID:26114487)
GO_REF:0000107		 RGD
Ensembl		 PMID:26114487 GO_REF:0000107 NCBI chr16:53,909,759...54,029,175
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr 3:133,007,693...133,204,277
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr18:53,696,197...53,901,992
Ensembl chr18:51,499,737...51,703,976 		JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO
IEA		 MGI:3042750 (PMID:15105374)
GO_REF:0000107		 RGD
Ensembl		 PMID:15105374 GO_REF:0000107 NCBI chr16:18,929,581...18,936,621
Ensembl chr16:18,893,576...18,902,612 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4835411 (PMID:19155270), (PMID:23591631) RGD PMID:19155270 PMID:23591631 NCBI chr 1:86,607,769...86,615,045
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1856705|MGI:1857869 (PMID:10395790), (PMID:10767326)		 Ensembl
RGD		 PMID:10395790 PMID:10767326 GO_REF:0000107 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:10767326) RGD PMID:10767326 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Foxe3 forkhead box E3 acts_upstream_of_or_within ISO
IEA		 MGI:2387330 (PMID:11309658)
GO_REF:0000107		 RGD
Ensembl		 PMID:11309658 GO_REF:0000107 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Foxp2 forkhead box P2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3723630 (PMID:17619227)		 Ensembl
RGD		 PMID:17619227 GO_REF:0000107 NCBI chr 4:44,099,848...44,677,700
Ensembl chr 4:43,133,912...43,711,683 		JBrowse link
G Ftx FTX transcript, XIST regulator acts_upstream_of_or_within ISO (PMID:30237402) RGD PMID:30237402 NCBI chr  X:68,588,349...68,630,338 JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within ISO MGI:2137525|MGI:3052418 (PMID:11782410), (PMID:15253273) RGD PMID:11782410 PMID:15253273 NCBI chr 2:187,179,668...187,181,284
Ensembl chr 2:184,490,840...184,492,456 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:98297 (PMID:18582859)		 Ensembl
RGD		 PMID:18582859 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3588845 (PMID:32049342)
GO_REF:0000107		 RGD
Ensembl		 PMID:32049342 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 acts_upstream_of_or_within ISO
IEA		 MGI:1915913 (PMID:21296886)
GO_REF:0000107		 RGD
Ensembl		 PMID:21296886 GO_REF:0000107 NCBI chr 3:62,209,432...62,346,590
Ensembl chr 3:41,801,930...41,936,901 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:4942413 (PMID:21377456)		 Ensembl
RGD		 PMID:21377456 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:68,400,477...68,530,258 		JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17331197)		 UniProt
RGD		 PMID:17331197 GO_REF:0000024 NCBI chr 5:170,804,511...170,807,988
Ensembl chr 5:165,522,234...165,523,001 		JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3822474 (PMID:19093031)		 Ensembl
RGD		 PMID:19093031 GO_REF:0000107 NCBI chr16:2,198,589...2,200,694
Ensembl chr16:2,191,852...2,193,957 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,269,302...6,280,429
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1934258 (PMID:18582859)		 Ensembl
RGD		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857713 (PMID:10196361)
GO_REF:0000107		 RGD
Ensembl		 PMID:10196361 GO_REF:0000107 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Lama1 laminin subunit alpha 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:1862040 (PMID:9238094)
GO_REF:0000107		 RGD
Ensembl		 PMID:9238094 GO_REF:0000107 NCBI chr 1:102,974,188...102,980,358
Ensembl chr 1:93,837,597...93,843,769 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463|MGI:2386570|MGI:3714802 (PMID:10660670), (PMID:20568247) RGD PMID:10660670 PMID:20568247 NCBI chr 3:37,257,025...37,338,675
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
G Mab21l1 mab-21 like 1 acts_upstream_of_or_within ISO
IEA		 (PMID:12642482)
GO_REF:0000107		 RGD
Ensembl		 PMID:12642482 GO_REF:0000107 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885 		JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within ISO MGI:3511363 (PMID:15385160) RGD PMID:15385160 NCBI chr 2:174,244,538...174,247,620
Ensembl chr 2:171,946,573...171,949,655 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (PMID:12941696) RGD PMID:12941696 NCBI chr 2:45,081,889...45,150,555
Ensembl chr 2:43,350,098...43,414,463 		JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO
IEA		 MGI:2684189 (PMID:14500757)
GO_REF:0000107		 RGD
Ensembl		 PMID:14500757 GO_REF:0000107 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:88401 (PMID:15576400)
GO_REF:0000107		 RGD
Ensembl		 PMID:15576400 GO_REF:0000107 NCBI chr 4:131,965,676...132,177,790
Ensembl chr 4:130,409,217...130,621,145 		JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within ISO
IEA		 MGI:5288506 (PMID:21531335)
GO_REF:0000107		 RGD
Ensembl		 PMID:21531335 GO_REF:0000107 NCBI chr 9:101,281,560...101,286,236
Ensembl chr 9:93,834,144...93,838,864 		JBrowse link
G Mtnr1a melatonin receptor 1A IEP RGD PMID:12890503 RGD:9588674 NCBI chr16:53,876,964...53,896,421
Ensembl chr16:47,144,461...47,163,919 		JBrowse link
G Mtnr1b melatonin receptor 1B IEP RGD PMID:12890503 RGD:9588674 NCBI chr 8:20,919,593...20,934,109
Ensembl chr 8:12,638,219...12,652,737 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA		 MGI:1857973|MGI:3055340 (PMID:19531352)
GO_REF:0000107		 RGD
Ensembl		 PMID:19531352 GO_REF:0000107 NCBI chr 7:44,689,407...44,692,638
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:108055 (PMID:11861467) RGD PMID:11861467 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod4 neuronal differentiation 4 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1339708 (PMID:11861467)		 GO_Central
Ensembl
RGD		 PMID:11861467 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:7,740,852...7,828,052
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3802571 (PMID:18477394) RGD PMID:18477394 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2176490|MGI:2176560 (PMID:15371513), (PMID:16000615)		 Ensembl
RGD		 PMID:15371513 PMID:16000615 GO_REF:0000107 NCBI chr20:47,632,347...47,653,464
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857673 (PMID:12756174)		 UniProt
RGD		 PMID:12756174 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA		 MGI:102764|MGI:108564|MGI:1856158|MGI:1931308|MGI:1934347|MGI:1934348 (PMID:11062307), (PMID:11069887), (PMID:12072567), (PMID:12183364), (PMID:12648492), (PMID:12756174), (PMID:16080917)
GO_REF:0000107		 RGD
Ensembl		 PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 More... GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO MGI:4340776 (PMID:25220058) RGD PMID:25220058 NCBI chr20:12,189,767...12,278,179
Ensembl chr20:12,191,648...12,278,710 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:9618168) RGD PMID:9618168 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Pknox1 PBX/knotted 1 homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:3530910 (PMID:16847320)
GO_REF:0000107		 RGD
Ensembl		 PMID:16847320 GO_REF:0000107 NCBI chr20:9,664,120...9,706,328
Ensembl chr20:9,662,899...9,703,727 		JBrowse link
G Prss56 serine protease 56 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:21397065)
GO_REF:0000107
MGI:5444189 (PMID:21532570)		 RGD
Ensembl		 PMID:21397065 PMID:21532570 GO_REF:0000107 NCBI chr 9:95,289,984...95,307,877
Ensembl chr 9:87,854,805...87,859,978 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20512159)		 Ensembl
RGD		 PMID:20512159 GO_REF:0000107 NCBI chr13:41,908,179...41,981,611
Ensembl chr13:39,352,247...39,429,169 		JBrowse link
G Rax retina and anterior neural fold homeobox acts_upstream_of_or_within ISO
IEA		 MGI:1856862|MGI:2152531 (PMID:11105055), (PMID:13970081), (PMID:15789424), (PMID:17247120), (PMID:640224)
GO_REF:0000107		 RGD
Ensembl		 PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 GO_REF:0000107 NCBI chr18:61,733,322...61,737,444
Ensembl chr18:59,463,737...59,467,431 		JBrowse link
G Rcn1 reticulocalbin 1 acts_upstream_of_or_within ISO
IEA		 (PMID:19474196)
GO_REF:0000107		 RGD
Ensembl		 PMID:19474196 GO_REF:0000107 NCBI chr 3:112,295,838...112,310,082
Ensembl chr 3:91,841,052...91,855,295 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IEP RGD PMID:9512345 RGD:633787 NCBI chr 2:251,425,228...251,457,209
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (PMID:17553904), (PMID:17558409) RGD PMID:17553904 PMID:17558409 NCBI chr19:31,865,050...31,957,930
Ensembl chr19:15,692,150...15,785,083 		JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within ISO MGI:97858 (PMID:9376317) RGD PMID:9376317 NCBI chr 3:31,387,892...31,474,415
Ensembl chr 3:10,989,832...11,073,712 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934268|MGI:3052661|MGI:95729 (PMID:12195432), (PMID:12756179), (PMID:16236765), (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:97490 (PMID:12072567) RGD PMID:12072567 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:11731796) RGD PMID:11731796 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Slc25a25 solute carrier family 25 member 25 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:99778 (PMID:21296886)		 Ensembl
RGD		 PMID:21296886 GO_REF:0000107 NCBI chr 3:36,106,448...36,139,812
Ensembl chr 3:15,708,703...15,742,216 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:4417931 (PMID:23543054)
GO_REF:0000107		 RGD
Ensembl		 PMID:23543054 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21901792)		 UniProt
Ensembl
RGD		 PMID:21901792 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO
IEA		 MGI:1856684 (PMID:14757819)
GO_REF:0000107		 RGD
Ensembl		 PMID:14757819 GO_REF:0000107 NCBI chr 3:161,228,699...161,247,319
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO
IEA		 MGI:4127851|MGI:4440463 (PMID:20159594)
GO_REF:0000107		 RGD
Ensembl		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO MGI:4284576 (PMID:22179047) RGD PMID:22179047 NCBI chr19:56,792,329...56,813,515
Ensembl chr19:39,883,077...39,904,269 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISS
ISO		 GO_REF:0000024
(PMID:21856951)		 UniProt
RGD		 PMID:21856951 GO_REF:0000024 NCBI chr 1:162,071,459...162,082,972
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO
IEA		 MGI:88180 (PMID:14681194)
GO_REF:0000107		 RGD
Ensembl		 PMID:14681194 GO_REF:0000107 NCBI chr 9:112,979,972...113,014,315
Ensembl chr 9:105,533,136...105,567,479 		JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1346018 (PMID:15905411)		 Ensembl
RGD		 PMID:15905411 GO_REF:0000107 NCBI chr 1:268,310,644...268,326,713
Ensembl chr 1:258,326,276...258,330,192 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1277163 (PMID:15905411)		 Ensembl
RGD		 PMID:15905411 GO_REF:0000107 NCBI chr 4:117,753,180...117,777,242
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:104554 (PMID:15576400)
GO_REF:0000107		 RGD
Ensembl		 PMID:15576400 GO_REF:0000107 NCBI chr 6:109,932,943...109,972,005
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:5558098|MGI:5558100 (PMID:24302887)		 Ensembl
RGD		 PMID:24302887 GO_REF:0000107 NCBI chr14:99,847,463...100,178,392
Ensembl chr14:95,646,038...95,977,113 		JBrowse link
G Wt1 WT1 transcription factor involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857268 (PMID:11889045)		 UniProt
RGD		 PMID:11889045 GO_REF:0000024 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO
IEA		 (PMID:27687499)
GO_REF:0000107		 RGD
Ensembl		 PMID:27687499 GO_REF:0000107 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Aqp1 aquaporin 1 acts_upstream_of_or_within ISO
IEA		 MGI:1857807 (PMID:11891232)
GO_REF:0000107		 RGD
Ensembl		 PMID:11891232 GO_REF:0000107 NCBI chr 4:85,812,784...85,824,964
Ensembl chr 4:84,482,512...84,494,690 		JBrowse link
G Aqp5 aquaporin 5 acts_upstream_of_or_within ISO MGI:2150059 (PMID:11891232) RGD PMID:11891232 NCBI chr 7:132,601,528...132,605,060
Ensembl chr 7:130,721,748...130,726,209 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:88180 (PMID:9268572)
GO_REF:0000107		 RGD
Ensembl		 PMID:9268572 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:1857654|MGI:2136986 (PMID:16154126), (PMID:16854970)
GO_REF:0000107		 RGD
Ensembl		 PMID:16154126 PMID:16854970 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Col8a1 collagen type VIII alpha 1 chain acts_upstream_of_or_within ISO
IEA		 MGI:88464 (PMID:16051690)
GO_REF:0000107		 RGD
Ensembl		 PMID:16051690 GO_REF:0000107 NCBI chr11:56,245,998...56,378,586
Ensembl chr11:42,777,628...42,906,424 		JBrowse link
G Col8a2 collagen type VIII alpha 2 chain acts_upstream_of_or_within ISO MGI:88463 (PMID:16051690) RGD PMID:16051690 NCBI chr 5:143,870,754...143,897,372
Ensembl chr 5:138,585,999...138,612,850 		JBrowse link
G Ephb1 Eph receptor B1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2677305 (PMID:12971893)		 Ensembl
RGD		 PMID:12971893 GO_REF:0000107 NCBI chr 8:111,386,432...111,823,759
Ensembl chr 8:102,507,549...102,944,839 		JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2149765 (PMID:12971893)		 Ensembl
RGD		 PMID:12971893 GO_REF:0000107 NCBI chr 5:154,179,065...154,360,459
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:2662293 (PMID:26114487)		 Ensembl
RGD		 PMID:26114487 GO_REF:0000107 NCBI chr16:53,909,759...54,029,175
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
G Ftx FTX transcript, XIST regulator acts_upstream_of_or_within ISO (PMID:30237402) RGD PMID:30237402 NCBI chr  X:68,588,349...68,630,338 JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO
IEA		 MGI:2449673 (PMID:15976303)
GO_REF:0000107		 RGD
Ensembl		 PMID:15976303 GO_REF:0000107 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856276 (PMID:8387379)
GO_REF:0000107		 RGD
Ensembl		 PMID:8387379 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712 		JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) RGD PMID:23453665 PMID:23633300 PMID:24798461 NCBI chr 4:159,237,562...159,239,223 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:103223 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:19000668) RGD PMID:19000668 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO
IEA		 MGI:1861626 (PMID:16104381)
GO_REF:0000107		 RGD
Ensembl		 PMID:16104381 GO_REF:0000107 NCBI chr 5:163,587,463...163,617,363
Ensembl chr 5:158,304,287...158,335,342 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO
IEA		 MGI:3605480 (PMID:15728677)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728677 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1857444 (PMID:7926784)		 HGNC-UCL
Ensembl
RGD		 PMID:7926784 GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,803,986...65,037,086
Ensembl chr10:64,306,301...64,536,658 		JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO MGI:99150 (PMID:16624538) RGD PMID:16624538 NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Sox12 SRY-box transcription factor 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:161,319,800...161,320,819
Ensembl chr 3:140,856,579...140,860,975 		JBrowse link
G Sox4 SRY-box transcription factor 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:35,876,298...35,881,004
Ensembl chr17:35,667,537...35,673,665 		JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) RGD PMID:22766609 NCBI chr16:47,984,732...50,711,352
Ensembl chr16:41,252,182...43,978,594 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (PMID:16251428) RGD PMID:16251428 NCBI chr 9:22,452,854...22,468,194
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:106918|MGI:2136645 (PMID:22627278)		 Ensembl
RGD		 PMID:22627278 GO_REF:0000107 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1101770 (PMID:16624538)		 Ensembl
RGD		 PMID:16624538 GO_REF:0000107 NCBI chr 6:133,471,615...133,500,875
Ensembl chr 6:127,707,596...127,732,747 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:49,391,385...49,976,861
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IBA
IEA		 (PMID:18654668)
GO_REF:0000033
(PMID:19228982)
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18654668 PMID:19228982 GO_REF:0000033 GO_REF:0000107 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:20300562)		 Ensembl
RGD		 PMID:20300562 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO
IEA		 (PMID:26287463)
GO_REF:0000107		 RGD
Ensembl		 PMID:26287463 GO_REF:0000107 NCBI chr10:99,324,047...99,601,683
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO GO:0060219 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO
IEA		 MGI:5140723 (PMID:21646512)
GO_REF:0000107		 RGD
Ensembl		 PMID:21646512 GO_REF:0000107 NCBI chr 6:123,927,657...124,025,354
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISO
IEA
ISS		 (PMID:17064680)
GO_REF:0000107		 RGD
Ensembl		 PMID:17064680 PMID:17064680 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3692444 (PMID:23676271)		 Ensembl
RGD		 PMID:23676271 GO_REF:0000107 NCBI chr 3:144,859,453...144,894,883
Ensembl chr 3:124,406,794...124,442,209 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3617328 (PMID:23676271)		 Ensembl
RGD		 PMID:23676271 GO_REF:0000107 NCBI chr 2:188,299,336...188,432,823
Ensembl chr 2:185,610,589...185,744,088 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISS
ISO		 GO_REF:0000024
(PMID:21856951)		 UniProt
RGD		 PMID:21856951 GO_REF:0000024 NCBI chr 1:162,071,459...162,082,972
Ensembl chr 1:152,656,693...152,672,588 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO
IEA		 MGI:2136645 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in ISO
IEA		 (PMID:17609112)
GO_REF:0000107
GO_REF:0000104		 RGD
Ensembl
UniProt		 PMID:17609112 GO_REF:0000104 GO_REF:0000107 NCBI chr 5:149,828,716...149,904,955
Ensembl chr 5:144,549,363...144,620,865 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18423449)		 UniProt
Ensembl
RGD		 PMID:18423449 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA		 (PMID:36125046)
GO_REF:0000107		 RGD
Ensembl		 PMID:36125046 GO_REF:0000107 NCBI chr 7:48,637,324...48,640,395
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA		 MGI:5051274|MGI:6163746 (PMID:23580486), (PMID:29518352)
GO_REF:0000107		 RGD
Ensembl		 PMID:23580486 PMID:29518352 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1934018 (PMID:26607664)		 Ensembl
RGD		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2676199 (PMID:9071226)		 Ensembl
RGD		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO
IEA		 (PMID:27687499)
GO_REF:0000107		 RGD
Ensembl		 PMID:27687499 GO_REF:0000107 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
IEA
ISO		 PMID:17064680
GO_REF:0000107
(PMID:17064680)		 Ensembl
RGD		 PMID:17064680 PMID:17064680 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Kera keratocan acts_upstream_of_or_within ISO
IEA		 UniProtKB:O60938 (PMID:10802664)
GO_REF:0000107		 RGD
Ensembl		 PMID:10802664 GO_REF:0000107 NCBI chr 7:34,284,100...34,291,555
Ensembl chr 7:32,397,382...32,404,837 		JBrowse link
G Krt12 keratin 12 involved_in
acts_upstream_of_or_within		 ISO
ISS
IEA		 (PMID:26758872)
MGI:3051854 (PMID:8977471)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:8977471 PMID:26758872 GO_REF:0000024 GO_REF:0000107 NCBI chr10:84,866,965...84,874,265
Ensembl chr10:84,370,883...84,378,045 		JBrowse link
G Limk2 LIM domain kinase 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3612836 (PMID:26234751)		 Ensembl
RGD		 PMID:26234751 GO_REF:0000107 NCBI chr14:82,384,256...82,509,755
Ensembl chr14:78,218,063...78,286,007 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 (PMID:7550230)
GO_REF:0000107		 RGD
Ensembl		 PMID:7550230 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:5645931 (PMID:29450535)		 Ensembl
RGD		 PMID:29450535 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18423449)		 UniProt
Ensembl
RGD		 PMID:18423449 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2183192 (PMID:16186342) RGD PMID:16186342 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:3044412 (PMID:20574024) RGD PMID:20574024 NCBI chr 9:99,822,242...99,866,722
Ensembl chr 9:92,374,574...92,419,222 		JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO
IEA		 MGI:1861722 (PMID:17184764)
GO_REF:0000107		 RGD
Ensembl		 PMID:17184764 GO_REF:0000107 NCBI chr 8:80,758,641...80,837,891
Ensembl chr 8:71,877,850...71,957,107 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:14623956)
GO_REF:0000107
MGI:107928 (PMID:17184764)		 RGD
Ensembl		 PMID:14623956 PMID:17184764 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO
IEA		 MGI:6113512 (PMID:28817564)
GO_REF:0000107		 RGD
Ensembl		 PMID:28817564 GO_REF:0000107 NCBI chr17:706,863...717,828
Ensembl chr17:701,124...707,826 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1859647 (PMID:15958512)		 Ensembl
RGD		 PMID:15958512 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO MGI:3574771|MGI:3583769 (PMID:18791178) RGD PMID:18791178 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO
IEA		 MGI:4458412 (PMID:23469164)
GO_REF:0000107		 RGD
Ensembl		 PMID:23469164 GO_REF:0000107 NCBI chr10:14,537,134...14,624,926
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Nes nestin involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:175,735,715...175,745,631
Ensembl chr 2:173,438,734...173,447,777 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846|MGI:1857880 (PMID:10498698), (PMID:10572050) RGD PMID:10498698 PMID:10572050 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like acts_upstream_of_or_within ISO
IEA		 MGI:3575541 (PMID:15661756)
GO_REF:0000107		 RGD
Ensembl		 PMID:15661756 GO_REF:0000107 NCBI chr 1:88,139,000...88,158,714
Ensembl chr 1:79,011,745...79,030,712 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:97858 (PMID:7607067)		 Ensembl
RGD		 PMID:7607067 GO_REF:0000107 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:83,893,384...83,928,142 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA		 MGI:97856 (PMID:7607067)
GO_REF:0000107		 RGD
Ensembl		 PMID:7607067 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:17473173)		 Ensembl
RGD		 PMID:17473173 GO_REF:0000107 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:4129326 (PMID:21945076)
GO_REF:0000107		 RGD
Ensembl		 PMID:21945076 GO_REF:0000107 NCBI chr 9:99,521,176...99,557,966
Ensembl chr 9:92,073,640...92,108,977 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2388066 (PMID:19286674)		 Ensembl
RGD		 PMID:19286674 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:161,590,479...161,632,149 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO
IEA		 MGI:5315747 (PMID:22228095)
GO_REF:0000107		 RGD
Ensembl		 PMID:22228095 GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in IEA
ISO		 GO_REF:0000107
(PMID:17273977)		 Ensembl
RGD		 PMID:17273977 GO_REF:0000107 NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA		 MGI:1857654 (PMID:10049573)
GO_REF:0000107		 RGD
Ensembl		 PMID:10049573 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:97490 (PMID:18653562) RGD PMID:18653562 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3777403 (PMID:18056999) RGD PMID:18056999 NCBI chr20:9,784,872...9,788,656
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (PMID:22022403) RGD PMID:22022403 NCBI chr17:33,044,446...33,051,259
Ensembl chr17:32,836,777...32,842,176 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (PMID:18832390) RGD PMID:18832390 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529 (PMID:28778798) RGD PMID:28778798 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2682066 (PMID:28778798)		 Ensembl
RGD		 PMID:28778798 GO_REF:0000107 NCBI chr 6:30,801,841...30,841,239
Ensembl chr 6:25,081,980...25,120,860 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA		 MGI:1934258 (PMID:18582859)
GO_REF:0000107		 RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (PMID:21220025) RGD PMID:21220025 NCBI chr12:39,224,422...39,362,126
Ensembl chr12:33,574,657...33,701,355 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191|MGI:4415718 (PMID:18985738), (PMID:19653321) RGD PMID:18985738 PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1306784 (PMID:18653562)		 Ensembl
RGD		 PMID:18653562 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (PMID:17584888) RGD PMID:17584888 NCBI chr 7:135,419,864...135,450,513
Ensembl chr 7:133,541,491...133,571,961 		JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO
IEA		 MGI:98372 (PMID:17584888)
GO_REF:0000107		 RGD
Ensembl		 PMID:17584888 GO_REF:0000107 NCBI chr 3:78,219,421...78,272,318
Ensembl chr 3:57,812,075...57,860,342 		JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO
IEA		 (PMID:15459098)
GO_REF:0000107		 RGD
Ensembl		 PMID:15459098 GO_REF:0000107 NCBI chr10:71,177,082...71,186,275
Ensembl chr10:70,679,518...70,688,529 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:9811866) RGD PMID:9811866 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) RGD PMID:16445854 NCBI chr 1:207,500,959...207,508,276
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1857515 (PMID:18436818) RGD PMID:18436818 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:51,948,948...52,115,214 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO
IEA		 MGI:1861722 (PMID:16207763), (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 PMID:16611695 GO_REF:0000107 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1353450|MGI:3043947 (PMID:16207763), (PMID:16611695)		 Ensembl
RGD		 PMID:16207763 PMID:16611695 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25406291)		 Ensembl
RGD		 PMID:25406291 GO_REF:0000107 NCBI chr14:106,811,769...106,890,961
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr 3:133,007,693...133,204,277
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr18:53,696,197...53,901,992
Ensembl chr18:51,499,737...51,703,976 		JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within
involved_in		 IEA
ISO		 GO_REF:0000107
MGI:3044226 (PMID:15056605)		 Ensembl
RGD		 PMID:15056605 GO_REF:0000107 NCBI chr 8:108,392,466...108,395,553
Ensembl chr 8:99,513,303...99,514,427 		JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO
IBA		 (PMID:25406291)
GO_REF:0000033		 RGD
GO_Central		 PMID:25406291 GO_REF:0000033 NCBI chr 5:158,595,121...158,603,283
Ensembl chr 5:153,314,711...153,320,259 		JBrowse link
G Mfap5 microfibril associated protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:157,399,919...157,422,448
Ensembl chr 4:155,727,925...155,750,458 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO
IEA		 MGI:97858 (PMID:16207763)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 GO_REF:0000107 NCBI chr15:10,837,252...11,482,037
Ensembl chr15:8,406,492...9,051,288 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA		 MGI:97857 (PMID:16207763)
GO_REF:0000107		 RGD
Ensembl		 PMID:16207763 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:133,367,833...133,390,177 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2159246 (PMID:10595508), (PMID:11830579)		 Ensembl
RGD		 PMID:10595508 PMID:11830579 GO_REF:0000107 NCBI chr 4:117,753,180...117,777,242
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA		 MGI:2653120 (PMID:19754878)
GO_REF:0000107		 RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO
IEA
ISS		 (PMID:18094249)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:18094249 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (PMID:19653321) RGD PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:12692551)
GO_REF:0000107		 RGD
Ensembl		 PMID:12692551 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:10469643) RGD PMID:10469643 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 involved_in ISO
IEA		 MGI:2662293 (PMID:26114487)
GO_REF:0000107		 RGD
Ensembl		 PMID:26114487 GO_REF:0000107 NCBI chr16:53,909,759...54,029,175
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO
IEA		 MGI:1856326 (PMID:14618389)
GO_REF:0000107		 RGD
Ensembl		 PMID:14618389 GO_REF:0000107 NCBI chr13:50,045,668...50,115,903
Ensembl chr13:47,493,949...47,564,318 		JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:12630957) RGD PMID:12630957 NCBI chr 8:108,392,466...108,395,553
Ensembl chr 8:99,513,303...99,514,427 		JBrowse link
G Myh15 myosin, heavy chain 15 IEP RGD PMID:19948655 RGD:2317122 NCBI chr11:65,084,666...65,226,010
Ensembl chr11:51,622,413...51,762,971 		JBrowse link
G Myom1 myomesin 1 IEP RGD PMID:12878677 RGD:633368 NCBI chr 9:118,362,547...118,485,954
Ensembl chr 9:110,915,943...111,039,344 		JBrowse link
G Myom2 myomesin 2 IEP RGD PMID:12878677 RGD:633368 NCBI chr16:81,222,467...81,295,025
Ensembl chr16:74,520,157...74,592,772 		JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846 (PMID:16638982), (PMID:21035439) RGD PMID:16638982 PMID:21035439 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP binding cassette subfamily B member 5 involved_in ISO
IEA		 (PMID:25030174)
GO_REF:0000107		 RGD
Ensembl		 PMID:25030174 GO_REF:0000107 NCBI chr 6:145,978,860...146,075,776
Ensembl chr 6:139,835,949...139,932,830 		JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 involved_in ISO (PMID:23818446) RGD PMID:23818446 NCBI chr19:58,596,095...58,749,239
Ensembl chr19:41,688,617...41,839,781 		JBrowse link
G Atf6 activating transcription factor 6 involved_in IEA
ISO		 GO_REF:0000107
(PMID:26029869)		 Ensembl
RGD		 PMID:26029869 GO_REF:0000107 NCBI chr13:85,460,312...85,639,959
Ensembl chr13:82,930,034...83,107,177 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:98715 (PMID:22228099)		 Ensembl
RGD		 PMID:22228099 GO_REF:0000107 NCBI chr 2:119,434,760...119,474,665
Ensembl chr 2:119,434,760...119,474,396 		JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO
IEA		 (PMID:16385460)
GO_REF:0000107		 RGD
Ensembl		 PMID:16385460 GO_REF:0000107 NCBI chr 1:88,283,864...88,286,244
Ensembl chr 1:79,155,693...79,158,505 		JBrowse link
G Bmp4 bone morphogenetic protein 4 NOT|involved_in ISO UniProtKB:P23359 (PMID:16154126) RGD PMID:16154126 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in ISO
IEA		 UniProtKB:P23359 (PMID:16154126)
GO_REF:0000107		 RGD
Ensembl		 PMID:16154126 GO_REF:0000107 NCBI chr17:26,523,704...26,785,558
Ensembl chr17:26,318,569...26,470,365 		JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO
IEA		 (PMID:16154126)
GO_REF:0000107		 RGD
Ensembl		 PMID:16154126 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:12117821)		 Ensembl
RGD		 PMID:12117821 GO_REF:0000107 NCBI chr 2:233,211,525...233,544,344
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Chrdl1 chordin-like 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:22284829)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:22284829 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:111,685,864...111,789,684
Ensembl chr  X:106,889,125...106,992,921 		JBrowse link
G Cpamd8 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 involved_in ISO (PMID:27839872) RGD PMID:27839872 NCBI chr 4:157,004,905...157,085,187
Ensembl chr 4:155,332,827...155,413,117 		JBrowse link
G Cryga crystallin, gamma A acts_upstream_of_or_within ISO MGI:1857595 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,482,176...66,484,638
Ensembl chr 9:66,482,176...66,509,896 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:1857597 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (PMID:15037589) RGD PMID:15037589 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626 		JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2387106 (PMID:15037589)		 Ensembl
RGD		 PMID:15037589 GO_REF:0000107 NCBI chr 9:73,935,798...73,937,409
Ensembl chr 9:66,442,054...66,444,067 		JBrowse link
G Cst3 cystatin C IEP RGD PMID:11431459 RGD:2306512 NCBI chr 3:156,790,061...156,794,116
Ensembl chr 3:136,336,920...136,340,822 		JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in ISO (PMID:21858205) RGD PMID:21858205 NCBI chr15:36,325,552...36,369,995
Ensembl chr15:32,210,074...32,253,309 		JBrowse link
G Fkrp fukutin related protein acts_upstream_of_or_within ISO MGI:4834518 (PMID:20675713) RGD PMID:20675713 NCBI chr 1:86,607,769...86,615,045
Ensembl chr 1:77,476,084...77,486,992 		JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO
IEA		 (PMID:9792859)
GO_REF:0000107
MGI:1856705|MGI:1857869 (PMID:10072431), (PMID:9635428)		 RGD
Ensembl		 PMID:9635428 PMID:9792859 PMID:10072431 GO_REF:0000107 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxe3 forkhead box E3 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:1856851 (PMID:10652278)
(PMID:27218149)		 UniProt
Ensembl
RGD		 PMID:10652278 PMID:27218149 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:29688405), (PMID:30802441)
MGI:3794302 (PMID:26234751)
GO_REF:0000107
(PMID:30802441)		 RGD
Ensembl		 PMID:26234751 PMID:29688405 PMID:30802441 GO_REF:0000107 NCBI chr 2:139,753,055...139,891,046
Ensembl chr 2:137,602,784...137,740,785 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:26908622)		 UniProt
RGD		 PMID:26908622 GO_REF:0000024 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Gdf3 growth differentiation factor 3 involved_in ISO (PMID:19864492) RGD PMID:19864492 NCBI chr 4:157,503,547...157,507,923
Ensembl chr 4:155,830,909...155,835,937 		JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (PMID:10391216) RGD PMID:10391216 NCBI chr12:11,009,236...11,015,941
Ensembl chr12:5,901,586...5,978,565
Ensembl chr16:5,901,586...5,978,565 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1918742 (PMID:22228099) RGD PMID:22228099 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147 		JBrowse link
G Ints15 integrator complex subunit 15 acts_upstream_of_or_within ISO
IEA		 (PMID:36851842)
GO_REF:0000107		 RGD
Ensembl		 PMID:36851842 GO_REF:0000107 NCBI chr12:16,358,644...16,373,763
Ensembl chr12:11,245,842...11,260,166 		JBrowse link
G Mab21l1 mab-21 like 1 involved_in ISO
IEA		 (PMID:27103078), (PMID:30487245)
GO_REF:0000107		 RGD
Ensembl		 PMID:27103078 PMID:30487245 GO_REF:0000107 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885 		JBrowse link
G Mab21l2 mab-21 like 2 involved_in ISO (PMID:24906020), (PMID:25719200) RGD PMID:24906020 PMID:25719200 NCBI chr 2:174,244,538...174,247,620
Ensembl chr 2:171,946,573...171,949,655 		JBrowse link
G Meis1 Meis homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:97,356,949...97,499,646
Ensembl chr14:93,155,419...93,294,265 		JBrowse link
G Meis2 Meis homeobox 2 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:97490 (PMID:12183364)		 GO_Central
Ensembl
RGD		 PMID:12183364 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:123,197,066...123,399,002
Ensembl chr 3:102,742,900...102,949,696 		JBrowse link
G Meis3 Meis homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:85,986,602...86,000,873
Ensembl chr 1:76,861,924...76,872,691 		JBrowse link
G Pbx2 PBX homeobox 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:4,156,107...4,161,503
Ensembl chr20:4,151,500...4,156,425 		JBrowse link
G Pbx3 PBX homeobox 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:37,886,241...38,079,956
Ensembl chr 3:17,488,693...17,682,791 		JBrowse link
G Pbx4 PBX homeobox 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:19,588,998...19,624,016
Ensembl chr16:19,555,090...19,590,014 		JBrowse link
G Pxdn peroxidasin involved_in IEA
ISO		 GO_REF:0000107
(PMID:31817535)		 Ensembl
RGD		 PMID:31817535 GO_REF:0000107 NCBI chr 6:52,308,347...52,385,943
Ensembl chr 6:46,580,761...46,658,345 		JBrowse link
G Rab18 RAB18, member RAS oncogene family involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:54,944,099...54,976,093
Ensembl chr17:54,943,955...54,976,043 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:15994349)
(PMID:10232633)		 Ensembl
RGD		 PMID:10232633 PMID:15994349 GO_REF:0000107 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Sall2 spalt-like transcription factor 2 involved_in ISO (PMID:24412933) RGD PMID:24412933 NCBI chr15:27,494,831...27,512,402
Ensembl chr15:25,021,345...25,038,918 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO
IEA		 (PMID:20137777)
GO_REF:0000107		 RGD
Ensembl		 PMID:20137777 GO_REF:0000107 NCBI chr10:17,422,906...17,538,977
Ensembl chr10:16,918,679...17,005,170 		JBrowse link
G Sipa1l3 signal-induced proliferation-associated 1 like 3 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:26231217)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:26231217 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:93,746,187...93,953,606
Ensembl chr 1:84,618,719...84,703,802 		JBrowse link
G Six3 SIX homeobox 3 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:18791198)
GO_REF:0000033
(PMID:12050133)		 RGD
GO_Central		 PMID:12050133 PMID:18791198 GO_REF:0000033 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Six6 SIX homeobox 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:91,634,568...91,639,548
Ensembl chr 6:91,634,568...91,639,548 		JBrowse link
G Slc39a5 solute carrier family 39 member 5 involved_in ISO
IEA		 (PMID:24891338)
GO_REF:0000107		 RGD
Ensembl		 PMID:24891338 GO_REF:0000107 NCBI chr 7:1,409,360...1,415,407
Ensembl chr 7:824,818...830,242 		JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in ISO
IEA
ISS		 (PMID:27018474)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:27018474 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:89,116,459...89,139,182
Ensembl chr 1:79,988,612...80,011,254 		JBrowse link
G Smoc1 SPARC related modular calcium binding 1 involved_in ISO
IEA		 (PMID:21194678)
GO_REF:0000107		 RGD
Ensembl		 PMID:21194678 GO_REF:0000107 NCBI chr 6:106,432,592...106,593,956
Ensembl chr 6:100,701,346...100,862,699 		JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO
IEA		 (PMID:18285410)
GO_REF:0000107		 RGD
Ensembl		 PMID:18285410 GO_REF:0000107 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:15944186)		 UniProt
Ensembl
RGD		 PMID:15944186 GO_REF:0000024 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Zdhhc16 zinc finger DHHC-type palmitoyltransferase 16 involved_in ISO
IEA		 (PMID:26644582)
GO_REF:0000107		 RGD
Ensembl		 PMID:26644582 GO_REF:0000107 NCBI chr 1:250,694,922...250,706,319
Ensembl chr 1:240,745,641...240,757,009 		JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in ISO (PMID:16431952) RGD PMID:16431952 NCBI chr 3:31,606,475...31,755,097
Ensembl chr 3:11,208,512...11,354,588 		JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:16431952) RGD PMID:16431952 NCBI chr 9:54,940,768...55,090,151
Ensembl chr 9:47,448,736...47,598,154 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (PMID:11456441) RGD PMID:11456441 NCBI chr17:4,487,716...4,490,701 JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO
IEA		 (PMID:8291537)
GO_REF:0000107		 RGD
Ensembl		 PMID:8291537 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:57,399,445...57,565,899 		JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:22940085 RGD:10043154 NCBI chr 5:7,623,528...7,868,206
Ensembl chr 5:2,840,765...3,084,929 		JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2676366 (PMID:12915475), (PMID:21052544)		 Ensembl
RGD		 PMID:12915475 PMID:21052544 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 acts_upstream_of_or_within
involved_in		 ISS
IBA		 GO_REF:0000024
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:131,855,890...131,908,217
Ensembl chr 3:131,852,552...131,908,156 		JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within ISO
IEA		 MGI:3612338 (PMID:16043865)
GO_REF:0000107		 RGD
Ensembl		 PMID:16043865 GO_REF:0000107 NCBI chr10:106,121,038...106,139,683
Ensembl chr10:105,634,783...105,641,322 		JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 NOT|acts_upstream_of_or_within ISO MGI:2446461 (PMID:12019334) RGD PMID:12019334 NCBI chr 5:52,242,564...52,286,255
Ensembl chr 5:47,452,150...47,489,809 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA		 MGI:2152779 (PMID:16249514)
GO_REF:0000107		 RGD
Ensembl		 PMID:16249514 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO
IEA		 MGI:3783323 (PMID:18367617)
GO_REF:0000107		 RGD
Ensembl		 PMID:18367617 GO_REF:0000107 NCBI chr 4:32,960,945...32,963,930
Ensembl chr 4:32,006,267...32,009,252 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 8:53,342,483...53,347,696
Ensembl chr 8:44,445,697...44,450,859 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 8:69,261,343...69,269,081
Ensembl chr 8:60,366,124...60,373,163 		JBrowse link
G Olfm3 olfactomedin 3 IDA RGD PMID:12019210 RGD:633402 NCBI chr 2:205,417,962...205,640,479
Ensembl chr 2:202,729,936...202,952,112 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA		 MGI:1856158 (PMID:12648492)
GO_REF:0000107		 RGD
Ensembl		 PMID:12648492 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Poc5 POC5 centriolar protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:29,454,392...29,483,468
Ensembl chr 2:27,719,762...27,748,805 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO
IEA		 MGI:3605621|MGI:3608904|MGI:4881674 (PMID:20463215)
GO_REF:0000107		 RGD
Ensembl		 PMID:20463215 GO_REF:0000107 NCBI chr20:49,542,465...49,564,088
Ensembl chr20:47,959,858...47,981,488 		JBrowse link
G Prkci protein kinase C, iota acts_upstream_of_or_within ISO
IEA		 MGI:3526850|MGI:3608904 (PMID:16267237)
GO_REF:0000107		 RGD
Ensembl		 PMID:16267237 GO_REF:0000107 NCBI chr 2:114,250,398...114,310,784
Ensembl chr 2:112,321,929...112,382,352 		JBrowse link
G Psen1 presenilin 1 NAS RGD PMID:12736250 RGD:724403 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rbp3 retinol binding protein 3 NAS RGD PMID:7916695 RGD:633871 NCBI chr16:9,273,787...9,282,255
Ensembl chr16:9,267,538...9,276,006 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:78,415,765...78,444,116
Ensembl chr 1:69,373,113...69,400,908 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:16574740)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:16574740 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2386674 (PMID:12651948)		 Ensembl
RGD		 PMID:12651948 GO_REF:0000107 NCBI chr  X:15,238,961...15,299,004
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO MGI:2655714 (PMID:12651948) RGD PMID:12651948 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (PMID:16445854) RGD PMID:16445854 NCBI chr 1:207,500,959...207,508,276
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO
IEA		 (PMID:19218615)
GO_REF:0000107		 RGD
Ensembl		 PMID:19218615 GO_REF:0000107 NCBI chr20:6,413,901...6,425,833
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (PMID:16251428) RGD PMID:16251428 NCBI chr 9:22,452,854...22,468,194
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in ISO (PMID:16465590) RGD PMID:16465590 NCBI chr17:5,092,108...5,244,414
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Ppp2r3a protein phosphatase 2, regulatory subunit B'', alpha involved_in ISO UniProtKB:A0A803JG39 (PMID:15687260) RGD PMID:15687260 NCBI chr 8:110,582,479...110,720,516
Ensembl chr 8:101,704,778...101,841,502 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753 (PMID:14625556) RGD PMID:14625556 NCBI chr15:24,422,876...24,432,709
Ensembl chr15:21,943,191...21,953,416 		JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO MGI:98354 (PMID:9030684) RGD PMID:9030684 NCBI chr14:95,378,626...95,551,358
Ensembl chr14:91,177,067...91,344,382 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO
IEA		 MGI:1856837 (PMID:21262862)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262862 GO_REF:0000107 NCBI chr 5:153,057,760...153,089,890
Ensembl chr 5:147,774,160...147,806,160 		JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:P70288 (PMID:21093383) RGD PMID:21093383 NCBI chr 5:147,138,328...147,165,387
Ensembl chr 5:141,853,989...141,881,111 		JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:O09106 (PMID:21093383) RGD PMID:21093383 NCBI chr20:42,101,815...42,126,486
Ensembl chr20:40,548,250...40,571,609 		JBrowse link
G Inhba inhibin subunit beta A involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
UniProtKB:Q04999 (PMID:14551263)		 UniProt
Ensembl
RGD		 PMID:14551263 GO_REF:0000024 GO_REF:0000107 NCBI chr17:53,787,159...53,810,942
Ensembl chr17:49,095,920...49,108,982 		JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO
IEA		 MGI:2673694 (PMID:25224220)
GO_REF:0000107		 RGD
Ensembl		 PMID:25224220 GO_REF:0000107 NCBI chr 5:115,009,900...115,012,993
Ensembl chr 5:109,893,145...109,897,656 		JBrowse link
G Kmt2c lysine methyltransferase 2C acts_upstream_of_or_within ISO MGI:3693319 (PMID:17021013) RGD PMID:17021013 NCBI chr 4:10,353,698...10,755,965
Ensembl chr 4:9,609,627...9,833,539 		JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (PMID:23201579), (PMID:25224220) RGD PMID:23201579 PMID:25224220 NCBI chr 2:45,081,889...45,150,555
Ensembl chr 2:43,350,098...43,414,463 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA
ISS		 (PMID:19389375)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:19389375 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:68,372,500...68,380,195
Ensembl chr 7:66,487,839...66,495,224 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:5645931 (PMID:29450535)		 Ensembl
RGD		 PMID:29450535 GO_REF:0000107 NCBI chr 7:126,518,587...126,614,581
Ensembl chr 7:124,639,142...124,658,113 		JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO
IEA		 MGI:95294 (PMID:9030684)
GO_REF:0000107		 RGD
Ensembl		 PMID:9030684 GO_REF:0000107 NCBI chr 6:20,286,117...20,363,350
Ensembl chr 6:14,533,360...14,611,107 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:15254231)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:15254231 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2445832|MGI:3522206 (PMID:20047077)		 Ensembl
RGD		 PMID:20047077 GO_REF:0000107 NCBI chr 9:21,924,050...21,933,338
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA		 (PMID:17273977)
GO_REF:0000107		 RGD
Ensembl		 PMID:17273977 GO_REF:0000107 NCBI chr 8:67,444,757...67,464,719
Ensembl chr 8:58,549,736...58,568,860 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO
ISS		 (PMID:9811866)
GO_REF:0000024		 RGD
UniProt		 PMID:9811866 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:50,674,678...50,677,653 		JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:30936473)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:30936473 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:58,605,403...58,669,339
Ensembl chr 8:49,708,927...49,772,875 		JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 NCBI chr12:12,333,050...12,504,750
Ensembl chr12:7,297,292...7,468,626 		JBrowse link
G Ninj1 ninjurin 1 acts_upstream_of_or_within ISO (PMID:19557008) RGD PMID:19557008 NCBI chr17:15,659,208...15,668,115
Ensembl chr17:15,452,813...15,461,704 		JBrowse link
G Opn4 opsin 4 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 NCBI chr16:9,926,638...9,935,810
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Opn5 opsin 5 involved_in ISO (PMID:30936473) RGD PMID:30936473 NCBI chr 9:25,865,610...25,913,315
Ensembl chr 9:18,368,416...18,415,476 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 NCBI chr 1:110,348,447...110,388,499
Ensembl chr 1:101,212,489...101,252,542 		JBrowse link
G Slc6a3 solute carrier family 6 member 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:30936473)		 UniProt
Ensembl
RGD		 PMID:30936473 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:31,537,990...31,578,962
Ensembl chr 1:29,709,443...29,750,413 		JBrowse link
G Th tyrosine hydroxylase involved_in ISS
ISO		 GO_REF:0000024
(PMID:30936473)		 UniProt
RGD		 PMID:30936473 GO_REF:0000024 NCBI chr 1:207,500,959...207,508,276
Ensembl chr 1:198,071,503...198,109,767 		JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO
IEA		 PMID:17064680
(PMID:17064680)
GO_REF:0000107		 RGD
Ensembl		 PMID:17064680 PMID:17064680 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:103223 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA		 (PMID:7550230)
GO_REF:0000107		 RGD
Ensembl		 PMID:7550230 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:9437321) RGD PMID:9437321 NCBI chr 2:220,391,417...220,411,588
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO
IEA		 MGI:106918|MGI:2136645 (PMID:22627278)
GO_REF:0000107		 RGD
Ensembl		 PMID:22627278 GO_REF:0000107 NCBI chr 4:148,328,099...148,334,992
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO
IEA		 (PMID:27687499)
GO_REF:0000107		 RGD
Ensembl		 PMID:27687499 GO_REF:0000107 NCBI chr 4:126,847,726...127,019,924
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 acts_upstream_of_or_within ISO
IEA		 MGI:3045749|MGI:5796183 (PMID:26218911)
GO_REF:0000107		 RGD
Ensembl		 PMID:26218911 GO_REF:0000107 NCBI chr 3:188,425,392...188,430,174
Ensembl chr 3:168,047,824...168,052,606 		JBrowse link
G Casp6 caspase 6 IEP RGD PMID:15161922 RGD:2301319 NCBI chr 2:221,140,287...221,152,727
Ensembl chr 2:218,466,076...218,478,502 		JBrowse link
G Cdk2 cyclin dependent kinase 2 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:1,714,392...1,721,964
Ensembl chr 7:1,129,811...1,137,403 		JBrowse link
G Cdk4 cyclin-dependent kinase 4 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:64,771,453...64,774,891
Ensembl chr 7:62,883,105...62,942,403 		JBrowse link
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA		 MGI:2653120 (PMID:19754878)
GO_REF:0000107		 RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:42,032,921...42,119,451
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Cryaa crystallin, alpha A involved_in
acts_upstream_of_or_within		 IEP
IBA
ISO		 GO_REF:0000033
MGI:1858025|MGI:2653028|MGI:88516 (PMID:11687536), (PMID:16439475), (PMID:9023351)		 GO_Central
RGD		 PMID:9023351 PMID:11687536 PMID:16439475 PMID:8187157 GO_REF:0000033, RGD:1600991 NCBI chr20:9,784,872...9,788,656
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:88515 (PMID:16439475)		 Ensembl
RGD		 PMID:16439475 GO_REF:0000107 NCBI chr 8:59,989,885...59,995,532
Ensembl chr 8:51,093,441...51,099,157 		JBrowse link
G Cryba1 crystallin, beta A1 involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:2753045 GO_REF:0000033, RGD:1298814 NCBI chr10:63,106,465...63,113,020
Ensembl chr10:62,608,383...62,614,726 		JBrowse link
G Cryba2 crystallin, beta A2 acts_upstream_of_or_within
involved_in		 IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
MGI:4950379 (PMID:21212184)		 Ensembl
GO_Central
RGD		 PMID:21212184 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:83,895,921...83,906,651
Ensembl chr 9:76,447,251...76,450,460 		JBrowse link
G Cryba4 crystallin, beta A4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221 		JBrowse link
G Crybb1 crystallin, beta B1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:50,030,146...50,043,756
Ensembl chr12:44,369,735...44,383,344 		JBrowse link
G Crybb2 crystallin, beta B2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:49,230,192...49,240,116
Ensembl chr12:43,569,747...43,579,671 		JBrowse link
G Crybb3 crystallin, beta B3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:43,557,103...43,562,120
Ensembl chr12:43,557,103...43,562,120 		JBrowse link
G Crybg3 crystallin beta-gamma domain containing 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:54,218,399...54,330,962
Ensembl chr11:40,749,214...40,861,752 		JBrowse link
G Cryga crystallin, gamma A involved_in
acts_upstream_of_or_within		 IEP
IBA
ISO		 GO_REF:0000033
MGI:1856493|MGI:1857595 (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8034315)		 GO_Central
RGD		 PMID:6510713 PMID:6877261 PMID:7088001 PMID:8034315 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:66,482,176...66,484,638
Ensembl chr 9:66,482,176...66,509,896 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within
involved_in		 IEP
ISO
IBA		 MGI:1857597|MGI:3777015 (PMID:12426373), (PMID:18172107), (PMID:8626090)
GO_REF:0000033		 RGD
GO_Central		 PMID:8626090 PMID:12426373 PMID:18172107 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Crygc crystallin, gamma C involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626 		JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within
involved_in		 IEP
IEA
ISO
IBA		 GO_REF:0000107
MGI:1858026|MGI:3762620 (PMID:10704279), (PMID:17652744)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:10704279 PMID:17652744 PMID:2338125 GO_REF:0000033 GO_REF:0000107, RGD:2303725 NCBI chr 9:73,935,798...73,937,409
Ensembl chr 9:66,442,054...66,444,067 		JBrowse link
G Cryge crystallin, gamma E involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:66,429,924...66,432,521
Ensembl chr 9:66,429,924...66,433,274 		JBrowse link
G Crygf crystallin, gamma F involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:2338125 GO_REF:0000033, RGD:2303725 NCBI chr 9:67,448,265...67,450,429
Ensembl chr 9:67,447,954...67,450,429 		JBrowse link
G Crygn crystallin, gamma N involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,286,475...11,294,002
Ensembl chr 4:10,394,020...10,401,543 		JBrowse link
G Crygs crystallin, gamma S acts_upstream_of_or_within
involved_in		 IEA
ISO
IBA		 GO_REF:0000107
MGI:1861635 (PMID:6877261), (PMID:8034315)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:6877261 PMID:8034315 GO_REF:0000033 GO_REF:0000107 NCBI chr11:78,207,170...78,212,273
Ensembl chr11:78,207,170...78,212,273 		JBrowse link
G Ctns cystinosin, lysosomal cystine transporter acts_upstream_of_or_within ISO MGI:2388945 (PMID:21897743) RGD PMID:21897743 NCBI chr10:58,300,069...58,315,725
Ensembl chr10:57,801,456...57,817,120 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:2680670 (PMID:14645510)
GO_REF:0000107		 RGD
Ensembl		 PMID:14645510 GO_REF:0000107 NCBI chr11:82,416,853...82,607,797
Ensembl chr11:68,911,883...69,102,689 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO
IEA		 MGI:2662293 (PMID:26114487)
GO_REF:0000107		 RGD
Ensembl		 PMID:26114487 GO_REF:0000107 NCBI chr16:53,909,759...54,029,175
Ensembl chr16:47,177,248...47,296,107 		JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17064680)
(PMID:27218149)		 UniProt
Ensembl
RGD		 PMID:17064680 PMID:27218149 PMID:17064680 GO_REF:0000024 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA		 MGI:3045749|MGI:3768912 (PMID:23136392)
GO_REF:0000107		 RGD
Ensembl		 PMID:23136392 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO
IEA		 MGI:2181200 (PMID:19623612)
GO_REF:0000107		 RGD
Ensembl		 PMID:19623612 GO_REF:0000107 NCBI chr17:73,544,234...73,575,670
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177 (PMID:9620080) RGD PMID:9620080 NCBI chr20:36,302,490...36,315,010
Ensembl chr20:35,755,991...35,768,582 		JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within ISO MGI:1857499 (PMID:6877261) RGD PMID:6877261 NCBI chr 2:187,179,668...187,181,284
Ensembl chr 2:184,490,840...184,492,456 		JBrowse link
G Gje1 gap junction protein, epsilon 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3529958 (PMID:18385072)		 Ensembl
RGD		 PMID:18385072 GO_REF:0000107 NCBI chr 1:9,085,789...9,088,204
Ensembl chr 1:9,086,348...9,088,138 		JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO
IEA		 MGI:1862040 (PMID:6510713), (PMID:6877261), (PMID:7088001), (PMID:8812411)
GO_REF:0000107		 RGD
Ensembl		 PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411 GO_REF:0000107 NCBI chr 1:102,974,188...102,980,358
Ensembl chr 1:93,837,597...93,843,769 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO MGI:2148635|MGI:2148636|MGI:2148637 (PMID:10383433), (PMID:10603348), (PMID:12835653) RGD PMID:10383433 PMID:10603348 PMID:12835653 NCBI chr19:60,259,200...60,622,145
Ensembl chr19:43,360,342...43,712,365 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11724781)		 UniProt
Ensembl
RGD		 PMID:11724781 GO_REF:0000024 GO_REF:0000107 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mip major intrinsic protein of lens fiber acts_upstream_of_or_within ISO MGI:1857105 (PMID:7333462) RGD PMID:7333462 NCBI chr 7:643,502...653,121
Ensembl chr 7:647,315...654,400 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:15716406)
GO_REF:0000107		 RGD
Ensembl		 PMID:15716406 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nhs NHS actin remodeling regulator involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:1861111 (PMID:8282045)		 GO_Central
Ensembl
RGD		 PMID:8282045 GO_REF:0000033 GO_REF:0000107 NCBI chr  X:36,185,067...36,524,711
Ensembl chr  X:32,552,026...32,889,992 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO
IEA		 MGI:2156742 (PMID:6877261)
GO_REF:0000107		 RGD
Ensembl		 PMID:6877261 GO_REF:0000107 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO MGI:3722688 (PMID:19412548) RGD PMID:19412548 NCBI chr14:42,905,734...43,004,740
Ensembl chr14:42,552,647...42,648,669 		JBrowse link
G Pds5b PDS5 cohesin associated factor B acts_upstream_of_or_within ISO MGI:3722688 (PMID:19412548) RGD PMID:19412548 NCBI chr12:5,038,114...5,181,208
Ensembl chr12:255,313...345,596 		JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19007884), (PMID:19334279)		 UniProt
Ensembl
RGD		 PMID:19007884 PMID:19334279 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:254,942,550...254,955,325
Ensembl chr 1:245,001,164...245,013,892 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:8812486)
GO_REF:0000107		 RGD
Ensembl		 PMID:8812486 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Pygo2 pygopus family PHD finger 2 acts_upstream_of_or_within ISO
IEA		 MGI:3712856 (PMID:17425782)
GO_REF:0000107		 RGD
Ensembl		 PMID:17425782 GO_REF:0000107 NCBI chr 2:177,147,407...177,152,476
Ensembl chr 2:174,849,936...174,854,758 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:11139622) RGD PMID:11139622 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Six5 SIX homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:2148689|MGI:2148692 (PMID:10802667), (PMID:10802668)
GO_REF:0000107		 RGD
Ensembl		 PMID:10802667 PMID:10802668 GO_REF:0000107 NCBI chr 1:87,868,859...87,873,929
Ensembl chr 1:78,741,367...78,745,890 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO
IEA		 MGI:4417931 (PMID:23543054)
GO_REF:0000107		 RGD
Ensembl		 PMID:23543054 GO_REF:0000107 NCBI chr15:93,977,812...93,984,431
Ensembl chr15:87,563,322...87,570,393 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO
IEA		 MGI:1856684 (PMID:24239381)
GO_REF:0000107		 RGD
Ensembl		 PMID:24239381 GO_REF:0000107 NCBI chr 3:161,228,699...161,247,319
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:4440463 (PMID:20159594)		 Ensembl
RGD		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:11641223)		 Ensembl
RGD		 PMID:11641223 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:11641223)
GO_REF:0000107		 RGD
Ensembl		 PMID:11641223 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228 		JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bfsp1 beaded filament structural protein 1 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:15037121)		 GO_Central
Ensembl
RGD		 PMID:15037121 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:151,648,588...151,706,153
Ensembl chr 3:131,195,087...131,229,337 		JBrowse link
G Bfsp2 beaded filament structural protein 2 acts_upstream_of_or_within ISO MGI:2671074 (PMID:15037121), (PMID:17065509) RGD PMID:15037121 PMID:17065509 NCBI chr 8:112,885,087...112,942,246
Ensembl chr 8:104,006,226...104,063,399 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:3777015 (PMID:18172107) RGD PMID:18172107 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3044679|MGI:3045749|MGI:95524 (PMID:18455718), (PMID:23136392) RGD PMID:18455718 PMID:23136392 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:95523 (PMID:18455718) RGD PMID:18455718 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA		 MGI:3045749|MGI:3768912|MGI:97385 (PMID:23136392)
GO_REF:0000107		 RGD
Ensembl		 PMID:23136392 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO MGI:2386105 (PMID:21118511) RGD PMID:21118511 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Tmod1 tropomodulin 1 involved_in IEA
ISO		 GO_REF:0000107
UniProtKB:Q6NVD9 (PMID:23144950)		 Ensembl
RGD		 PMID:23144950 GO_REF:0000107 NCBI chr 5:65,112,062...65,189,563
Ensembl chr 5:60,338,512...60,393,956 		JBrowse link
G Vim vimentin acts_upstream_of_or_within ISO (PMID:15037121) RGD PMID:15037121 NCBI chr17:81,577,261...81,585,746
Ensembl chr17:76,668,647...76,677,187 		JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crygd crystallin, gamma D acts_upstream_of_or_within IDA
IEA
ISO		 GO_REF:0000107
MGI:3762620 (PMID:17652744)		 Ensembl
RGD		 PMID:17652744 PMID:8575616 GO_REF:0000107, RGD:1601018 NCBI chr 9:73,935,798...73,937,409
Ensembl chr 9:66,442,054...66,444,067 		JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:17215516)		 Ensembl
RGD		 PMID:17215516 GO_REF:0000107 NCBI chr 7:8,982,765...8,994,689
Ensembl chr 7:8,332,029...8,343,952 		JBrowse link
G Kdm5b lysine demethylase 5B IEP RGD PMID:24142921 RGD:9587771 NCBI chr13:48,554,367...48,625,721
Ensembl chr13:46,002,542...46,073,872 		JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2148636|MGI:2148637 (PMID:10383433), (PMID:12835653)
GO_REF:0000033		 RGD
GO_Central		 PMID:10383433 PMID:12835653 GO_REF:0000033 NCBI chr19:60,259,200...60,622,145
Ensembl chr19:43,360,342...43,712,365 		JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in IEA
ISO		 GO_REF:0000107
(PMID:20181838)		 Ensembl
RGD		 PMID:20181838 GO_REF:0000107 NCBI chr14:83,850,894...83,934,263
Ensembl chr14:79,627,399...79,710,667 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 acts_upstream_of_or_within ISO
IEA		 MGI:1100860 (PMID:23136392)
GO_REF:0000107		 RGD
Ensembl		 PMID:23136392 GO_REF:0000107 NCBI chr 1:141,526,192...141,913,575
Ensembl chr 1:132,132,849...132,503,286 		JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISO
IEA		 (PMID:19007884)
GO_REF:0000107		 RGD
Ensembl		 PMID:19007884 GO_REF:0000107 NCBI chr 1:254,942,550...254,955,325
Ensembl chr 1:245,001,164...245,013,892 		JBrowse link
G Plaat1 phospholipase A and acyltransferase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:71,517,492...71,537,142
Ensembl chr11:71,517,493...71,527,020 		JBrowse link
G Plaat3 phospholipase A and acyltransferase 3 involved_in ISS
ISO		 GO_REF:0000024
(PMID:33854238)		 UniProt
RGD		 PMID:33854238 GO_REF:0000024 NCBI chr 1:214,211,755...214,245,551
Ensembl chr 1:204,782,729...204,817,667 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:12072567) RGD PMID:12072567 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Skil SKI-like proto-oncogene acts_upstream_of_or_within ISO
IEA		 (PMID:17215516)
GO_REF:0000107		 RGD
Ensembl		 PMID:17215516 GO_REF:0000107 NCBI chr 2:114,175,534...114,203,663
Ensembl chr 2:112,247,051...112,275,080 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 IEP RGD PMID:16043861 RGD:2315033 NCBI chr 2:136,532,912...136,668,560
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA		 (PMID:17215516)
GO_REF:0000107		 RGD
Ensembl		 PMID:17215516 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO
IBA
ISS
IEA		 (PMID:21436445)
GO_REF:0000033
GO_REF:0000024
GO_REF:0000107		 RGD
GO_Central
UniProt
Ensembl		 PMID:21436445 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:65,034,317...65,108,165
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO
IEA		 (PMID:17215516)
GO_REF:0000107		 RGD
Ensembl		 PMID:17215516 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 involved_in ISO (PMID:15572692) RGD PMID:15572692 NCBI chr 9:69,321,072...69,490,630
Ensembl chr 9:61,827,139...61,905,699 		JBrowse link
G Atf4 activating transcription factor 4 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:10096021), (PMID:10885750), (PMID:11806972)		 UniProt
Ensembl
RGD		 PMID:10096021 PMID:10885750 PMID:11806972 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:113,684,681...113,686,739
Ensembl chr 7:111,804,183...111,806,446 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3665275|MGI:3777403 (PMID:16799046), (PMID:18056999) RGD PMID:16799046 PMID:18056999 NCBI chr20:9,784,872...9,788,656
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:1857597 (PMID:12426373), (PMID:8626090) RGD PMID:8626090 PMID:12426373 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520 		JBrowse link
G Epha2 Eph receptor A2 involved_in ISO
IEA		 (PMID:18948590)
GO_REF:0000107		 RGD
Ensembl		 PMID:18948590 GO_REF:0000107 NCBI chr 5:158,888,629...158,917,100
Ensembl chr 5:153,605,644...153,634,117 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:10080188)
GO_REF:0000107
(PMID:11850194)		 RGD
Ensembl		 PMID:10080188 PMID:11850194 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO
IEA		 MGI:1856684 (PMID:24239381)
GO_REF:0000107		 RGD
Ensembl		 PMID:24239381 GO_REF:0000107 NCBI chr 3:161,228,699...161,247,319
Ensembl chr 3:140,768,537...140,785,121 		JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:1857137 (PMID:9851982)
GO_REF:0000107		 RGD
Ensembl		 PMID:9851982 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO MGI:98364 (PMID:17140559) RGD PMID:17140559 NCBI chr13:80,653,602...80,796,279
Ensembl chr13:78,130,685...78,263,363 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:3693322 (PMID:17066077) RGD PMID:17066077 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:101898 (PMID:17140559) RGD PMID:17140559 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:1888387 (PMID:10571739) RGD PMID:10571739 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member acts_upstream_of_or_within ISO
IEA		 MGI:4359826 (PMID:19365570)
GO_REF:0000107		 RGD
Ensembl		 PMID:19365570 GO_REF:0000107 NCBI chr 2:213,209,907...213,323,305
Ensembl chr 2:210,525,260...210,638,798 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:3045749|MGI:3696062 (PMID:18653562) RGD PMID:18653562 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1858023|MGI:3665274|MGI:3665275 (PMID:16799046), (PMID:8812430) RGD PMID:8812430 PMID:16799046 NCBI chr20:9,784,872...9,788,656
Ensembl chr20:9,783,605...9,787,349 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA		 MGI:2148567|MGI:3045749 (PMID:16102745)
GO_REF:0000107		 RGD
Ensembl		 PMID:16102745 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:11290300) RGD PMID:11290300 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:76,987,993...77,003,341 		JBrowse link
G Lctl lactase-like involved_in ISO
IEA		 (PMID:29425878)
GO_REF:0000107		 RGD
Ensembl		 PMID:29425878 GO_REF:0000107 NCBI chr 8:73,506,096...73,534,668
Ensembl chr 8:64,618,350...64,639,357 		JBrowse link
G Meis1 Meis homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:3029063 (PMID:14713950)
GO_REF:0000107		 RGD
Ensembl		 PMID:14713950 GO_REF:0000107 NCBI chr14:97,356,949...97,499,646
Ensembl chr14:93,155,419...93,294,265 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3605480 (PMID:15728677)		 Ensembl
RGD		 PMID:15728677 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO
IEA		 MGI:3605481 (PMID:15728677)
GO_REF:0000107		 RGD
Ensembl		 PMID:15728677 GO_REF:0000107 NCBI chr11:67,825,296...67,931,999
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19334279)		 UniProt
Ensembl
RGD		 PMID:19334279 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:254,942,550...254,955,325
Ensembl chr 1:245,001,164...245,013,892 		JBrowse link
G Prox1 prospero homeobox 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:10080188)		 Ensembl
RGD		 PMID:10080188 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:2137412 (PMID:9512512) RGD PMID:9512512 NCBI chr16:83,837,689...83,841,703
Ensembl chr16:77,137,584...77,138,762 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18423449)		 UniProt
Ensembl
RGD		 PMID:18423449 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in IEA
IBA
ISO
ISS		 GO_REF:0000107
GO_REF:0000033
(PMID:21436445)
GO_REF:0000024		 Ensembl
GO_Central
RGD
UniProt		 PMID:21436445 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:65,034,317...65,108,165
Ensembl chr 5:60,238,678...60,312,544 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (PMID:18224708), (PMID:9918694) RGD PMID:9918694 PMID:18224708 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO
IEA		 MGI:3521833 (PMID:15569927)
GO_REF:0000107		 RGD
Ensembl		 PMID:15569927 GO_REF:0000107 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA		 (PMID:11850194)
GO_REF:0000107		 RGD
Ensembl		 PMID:11850194 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:164,527,083...164,677,037
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:15976303)		 Ensembl
RGD		 PMID:15976303 GO_REF:0000107 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2149672 (PMID:16038893)		 Ensembl
RGD		 PMID:16038893 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:21875655)		 UniProt
Ensembl
RGD		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr19:46,390,958...46,394,599
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISO
IEA
ISS		 (PMID:10652278), (PMID:10890982), (PMID:16199865)
GO_REF:0000107		 RGD
Ensembl		 PMID:10652278 PMID:10890982 PMID:16199865 PMID:16199865 GO_REF:0000107, RGD:10047273 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Spred1 sprouty-related, EVH1 domain containing 1 involved_in ISO
IEA		 (PMID:29501879)
GO_REF:0000107		 RGD
Ensembl		 PMID:29501879 GO_REF:0000107 NCBI chr 3:124,437,230...124,504,358
Ensembl chr 3:103,983,072...104,049,718 		JBrowse link
G Spred2 sprouty-related, EVH1 domain containing 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:29501879)		 UniProt
RGD		 PMID:29501879 GO_REF:0000024 NCBI chr14:98,350,577...98,452,143
Ensembl chr14:94,148,837...94,249,162 		JBrowse link
G Spred3 sprouty-related, EVH1 domain containing 3 involved_in ISO (PMID:29501879) RGD PMID:29501879 NCBI chr 1:93,586,259...93,597,692
Ensembl chr 1:84,459,314...84,470,249 		JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 involved_in ISO
IEA		 (PMID:29501879)
GO_REF:0000107		 RGD
Ensembl		 PMID:29501879 GO_REF:0000107 NCBI chr 2:122,484,995...122,490,008
Ensembl chr 2:120,556,706...120,566,189 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 involved_in ISO
IEA		 (PMID:29501879)
GO_REF:0000107		 RGD
Ensembl		 PMID:29501879 GO_REF:0000107 NCBI chr15:89,106,809...89,111,926
Ensembl chr15:82,692,143...82,698,009 		JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1857430 (PMID:10321489) RGD PMID:10321489 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO
IEA		 MGI:3054837 (PMID:15363390)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363390 GO_REF:0000107 NCBI chr 3:188,266,572...188,268,786
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Tmem215 transmembrane protein 215 acts_upstream_of_or_within ISO (PMID:30370660) RGD PMID:30370660 NCBI chr 5:60,408,587...60,411,841
Ensembl chr 5:55,612,568...55,615,828 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:164,527,083...164,677,037
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angptl7 angiopoietin like 7 involved_in ISO
IEA		 (PMID:25622036)
GO_REF:0000107		 RGD
Ensembl		 PMID:25622036 GO_REF:0000107 NCBI chr 5:164,215,223...164,220,408
Ensembl chr 5:158,932,794...158,937,324 		JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in ISO
IEA		 (PMID:18816825)
GO_REF:0000107		 RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 2:117,413,206...117,436,758
Ensembl chr 2:115,492,285...115,508,401 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21441919)
MGI:2159015 (PMID:21441919)
GO_REF:0000107
GO_REF:0000002		 RGD
Ensembl
InterPro		 PMID:21441919 GO_REF:0000002 GO_REF:0000107 NCBI chr20:25,529,528...25,529,977
Ensembl chr20:25,530,826...25,531,275 		JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 7:35,622,267...35,731,904
Ensembl chr 7:33,735,871...33,843,295 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 IEP RGD PMID:16079002 RGD:2317729 NCBI chr  X:156,367,582...156,464,085
Ensembl chr  X:151,216,507...151,286,775 		JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 IEP RGD PMID:16079002 RGD:2317729 NCBI chr13:47,708,157...47,807,389
Ensembl chr13:45,156,146...45,255,246 		JBrowse link
G Bsg basigin involved_in ISS
ISO		 GO_REF:0000024
(PMID:10967074), (PMID:11273674), (PMID:11853760)		 UniProt
RGD		 PMID:10967074 PMID:11273674 PMID:11853760 GO_REF:0000024 NCBI chr 7:10,643,788...10,651,005
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Casp2 caspase 2 IEP RGD PMID:9809666 RGD:4107085 NCBI chr 4:72,116,265...72,134,023
Ensembl chr 4:71,149,669...71,167,379 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit IEP RGD PMID:20589906 RGD:405650605 NCBI chr 6:110,852,188...110,855,054
Ensembl chr 6:105,121,170...105,124,036 		JBrowse link
G Gpm6a glycoprotein m6a involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18776950)		 UniProt
Ensembl
RGD		 PMID:18776950 GO_REF:0000024 GO_REF:0000107 NCBI chr16:43,374,385...43,706,461
Ensembl chr16:36,641,284...36,973,475 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:15716406)
GO_REF:0000107		 RGD
Ensembl		 PMID:15716406 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Optn optineurin IEP RGD PMID:17687037 RGD:7800681 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:73,209,575...73,260,251 		JBrowse link
G Per1 period circadian regulator 1 IEP RGD PMID:20589906 RGD:405650605 NCBI chr10:54,299,002...54,313,804
Ensembl chr10:53,805,535...53,814,431 		JBrowse link
G Per2 period circadian regulator 2 IEP RGD PMID:20589906 RGD:405650605 NCBI chr 9:99,454,828...99,497,069
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Psen1 presenilin 1 IEP RGD PMID:12401445 RGD:729595 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rab11fip4 RAB11 family interacting protein 4 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:65,048,070...65,156,086
Ensembl chr10:64,550,177...64,654,759 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:2631392 RGD:9585660 NCBI chr 2:251,425,228...251,457,209
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:110,348,447...110,388,499
Ensembl chr 1:101,212,489...101,252,542 		JBrowse link
G Slc17a7 solute carrier family 17 member 7 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:104,786,172...104,798,049
Ensembl chr 1:95,649,745...95,661,588 		JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 7:25,881,557...25,936,837
Ensembl chr 7:23,994,217...24,048,079 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO
IEA		 (PMID:18816825)
GO_REF:0000107		 RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 involved_in ISO
IEA		 (PMID:18816825)
GO_REF:0000107		 RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 4:11,441,142...11,472,781
Ensembl chr 4:10,548,751...10,580,326 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO
IEA		 (PMID:9217007)
GO_REF:0000107		 RGD
Ensembl		 PMID:9217007 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:5469314 (PMID:23129809) RGD PMID:23129809 NCBI chr 5:151,192,014...151,269,291
Ensembl chr 5:145,908,181...145,985,564 		JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO
IEA		 MGI:1861722 (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16611695 GO_REF:0000107 NCBI chr 1:227,426,939...227,579,497
Ensembl chr 1:218,042,127...218,152,961 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO
IEA		 MGI:1353450 (PMID:16611695)
GO_REF:0000107		 RGD
Ensembl		 PMID:16611695 GO_REF:0000107 NCBI chr 1:129,392,516...129,436,552
Ensembl chr 1:119,982,277...120,017,436 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISO
ISS		 (PMID:20150232)
GO_REF:0000024		 RGD
UniProt		 PMID:20150232 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (PMID:11458394) RGD PMID:11458394 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO		 GO_REF:0000024
(PMID:20150232)		 UniProt
RGD		 PMID:20150232 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21875655)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:76,763,864...76,768,454
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21875655)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:18973577)		 Ensembl
RGD		 PMID:18973577 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:165,791,101...165,808,669
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISO
ISS
IEA		 (PMID:22527307)
(PMID:10652278), (PMID:16199865)
GO_REF:0000107		 RGD
Ensembl		 PMID:10652278 PMID:16199865 PMID:22527307 PMID:16199865 PMID:22527307 GO_REF:0000107, RGD:10047273, RGD:10047255 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:18423449)		 UniProt
Ensembl
RGD		 PMID:18423449 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:49,736,773...49,738,794
Ensembl chr 6:44,008,340...44,010,354 		JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:29501879)		 UniProt
Ensembl
RGD		 PMID:29501879 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO
IEA		 (PMID:16162653)
GO_REF:0000107		 RGD
Ensembl		 PMID:16162653 GO_REF:0000107 NCBI chr 3:49,624,028...49,754,323
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:221,140,287...221,152,727
Ensembl chr 2:218,466,076...218,478,502 		JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2663971 (PMID:12717433)		 Ensembl
RGD		 PMID:12717433 GO_REF:0000107 NCBI chr 6:132,598,968...132,692,123
Ensembl chr 6:126,834,531...126,928,224 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within		 ISO (PMID:18832390)
MGI:3574771|MGI:3583769 (PMID:18791178)		 RGD PMID:18791178 PMID:18832390 NCBI chr 9:73,606,860...73,614,039
Ensembl chr 9:66,113,112...66,121,457 		JBrowse link
G Klf4 KLF transcription factor 4 acts_upstream_of_or_within ISO
IEA		 MGI:2183917|MGI:3045749 (PMID:17060454)
GO_REF:0000107		 RGD
Ensembl		 PMID:17060454 GO_REF:0000107 NCBI chr 5:75,074,107...75,079,182
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G Muc4 mucin 4, cell surface associated IEP RGD PMID:11120573 RGD:2303744 NCBI chr11:81,513,321...81,575,200 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931047 (PMID:10229225) RGD PMID:10229225 NCBI chr 9:22,452,854...22,468,194
Ensembl chr 9:14,955,300...14,970,641 		JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 acts_upstream_of_or_within ISO
IEA		 MGI:99702 (PMID:15955981)
GO_REF:0000107		 RGD
Ensembl		 PMID:15955981 GO_REF:0000107 NCBI chr20:5,102,334...5,111,615
Ensembl chr20:5,100,480...5,109,264 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA		 MGI:1097161 (PMID:15955981)
GO_REF:0000107		 RGD
Ensembl		 PMID:15955981 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 acts_upstream_of_or_within ISO MGI:96683 (PMID:22426483) RGD PMID:22426483 NCBI chr12:12,333,050...12,504,750
Ensembl chr12:7,297,292...7,468,626 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO MGI:3590648 (PMID:16466397) RGD PMID:16466397 NCBI chr11:48,891,813...48,897,732
Ensembl chr11:35,422,328...35,428,254 		JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO
IEA		 MGI:95558 (PMID:22426483)
GO_REF:0000107		 RGD
Ensembl		 PMID:22426483 GO_REF:0000107 NCBI chr14:32,572,031...32,615,204
Ensembl chr14:32,217,871...32,261,018 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (PMID:24101522) RGD PMID:24101522 NCBI chr19:40,859,769...40,859,843
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
post-embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO
IEA		 MGI:3054837 (PMID:15363390)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363390 GO_REF:0000107 NCBI chr 3:188,266,572...188,268,786
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:25406291)		 Ensembl
RGD		 PMID:25406291 GO_REF:0000107 NCBI chr14:106,811,769...106,890,961
Ensembl chr14:102,610,908...102,690,018 		JBrowse link
G Fbn1 fibrillin 1 involved_in ISO
IEA		 (PMID:25406291)
GO_REF:0000107		 RGD
Ensembl		 PMID:25406291 GO_REF:0000107 NCBI chr 3:133,007,693...133,204,277
Ensembl chr 3:112,554,925...112,750,889 		JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 5:158,595,121...158,603,283
Ensembl chr 5:153,314,711...153,320,259 		JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:12915475)
GO_REF:0000107
(PMID:15316081), (PMID:16885194)		 RGD
Ensembl		 PMID:12915475 PMID:15316081 PMID:16885194 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule acts_upstream_of_or_within ISO
IEA		 MGI:3761008 (PMID:18216855)
GO_REF:0000107		 RGD
Ensembl		 PMID:18216855 GO_REF:0000107 NCBI chr11:49,391,385...49,976,861
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO MGI:2668595 (PMID:10097103) RGD PMID:10097103 NCBI chr16:82,821,184...82,837,971
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1b cyclin-dependent kinase inhibitor 1B acts_upstream_of_or_within ISO MGI:104564 (PMID:9784491) RGD PMID:9784491 NCBI chr 4:169,491,273...169,496,500
Ensembl chr 4:167,760,181...167,764,982 		JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:104565 (PMID:9784491)		 Ensembl
RGD		 PMID:9784491 GO_REF:0000107 NCBI chr 1:208,084,801...208,087,680
Ensembl chr 1:198,655,407...198,658,048 		JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:22323600)		 Ensembl
RGD		 PMID:22323600 GO_REF:0000107 NCBI chr 3:126,770,945...126,780,769
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:17075007)		 UniProt
Ensembl
RGD		 PMID:17075007 GO_REF:0000024 GO_REF:0000107 NCBI chr17:86,959,621...86,961,475
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:20890044) RGD PMID:20890044 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO
IEA		 (PMID:23932931)
GO_REF:0000107		 RGD
Ensembl		 PMID:23932931 GO_REF:0000107 NCBI chr18:17,061,284...17,339,747
Ensembl chr18:16,786,867...17,064,786 		JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:11747369) RGD PMID:11747369 NCBI chr 3:116,619,633...116,670,212
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of_or_within ISO
IEA		 (PMID:11747369)
GO_REF:0000107		 RGD
Ensembl		 PMID:11747369 GO_REF:0000107 NCBI chr 1:219,312,512...219,314,535
Ensembl chr 1:209,887,854...209,889,877 		JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO
IEA		 (PMID:11747369)
GO_REF:0000107		 RGD
Ensembl		 PMID:11747369 GO_REF:0000107 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221 		JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase acts_upstream_of_or_within ISO
IEA		 MGI:2179948 (PMID:15579149)
GO_REF:0000107		 RGD
Ensembl		 PMID:15579149 GO_REF:0000107 NCBI chr12:25,042,882...25,050,608
Ensembl chr12:19,407,360...19,413,651 		JBrowse link
G Actb actin, beta IEP RGD PMID:22916200 RGD:9587758 NCBI chr12:16,776,664...16,779,634
Ensembl chr12:11,663,109...11,672,877 		JBrowse link
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within ISO MGI:1856535 (PMID:21052544), (PMID:24791901) RGD PMID:21052544 PMID:24791901 NCBI chr17:5,092,108...5,244,414
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within ISO MGI:4360696 (PMID:20592197) RGD PMID:20592197 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:31302159) RGD PMID:31302159 NCBI chr 4:119,683,085...119,783,471
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:1857951 (PMID:10982921) RGD PMID:10982921 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arsg arylsulfatase G acts_upstream_of_or_within ISO
IEA		 (PMID:26975023)
GO_REF:0000107		 RGD
Ensembl		 PMID:26975023 GO_REF:0000107 NCBI chr10:94,912,094...95,063,021
Ensembl chr10:94,447,399...94,542,941 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA		 MGI:1857429 (PMID:9699561)
GO_REF:0000107		 RGD
Ensembl		 PMID:9699561 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:31302159)		 Ensembl
RGD		 PMID:31302159 GO_REF:0000107 NCBI chr 1:211,614,195...211,633,504
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA		 (PMID:31302159), (PMID:36125046), (PMID:36700052)
GO_REF:0000107		 RGD
Ensembl		 PMID:31302159 PMID:36125046 PMID:36700052 GO_REF:0000107 NCBI chr 7:48,637,324...48,640,395
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:17069773 RGD:2289001 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2158497 (PMID:12654290)		 Ensembl
RGD		 PMID:12654290 GO_REF:0000107 NCBI chr 2:233,211,525...233,544,344
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 IEP RGD PMID:10482474 RGD:5129487 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO (PMID:28057640) RGD PMID:28057640 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F acts_upstream_of_or_within ISO MGI:3605845 (PMID:21052544) RGD PMID:21052544 NCBI chr  X:17,539,992...17,568,308
Ensembl chr  X:14,868,024...14,896,413 		JBrowse link
G Calb1 calbindin 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:10741426)		 Ensembl
RGD		 PMID:10741426 GO_REF:0000107 NCBI chr 5:34,172,612...34,199,555
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:21052544), (PMID:31302159) RGD PMID:21052544 PMID:31302159 NCBI chr 7:37,196,765...37,285,955
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cfd complement factor D acts_upstream_of_or_within ISO (PMID:28057640) RGD PMID:28057640 NCBI chr 7:10,463,773...10,465,496
Ensembl chr 7:9,813,150...9,815,053 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within_positive_effect ISO (PMID:30705315)
(PMID:17921253), (PMID:28057640)		 RGD PMID:17921253 PMID:28057640 PMID:30705315 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO
IEA		 (PMID:15300250)
GO_REF:0000107		 RGD
Ensembl		 PMID:15300250 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Clcn2 chloride voltage-gated channel 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:21052544)		 Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr11:93,702,382...93,716,059
Ensembl chr11:80,198,153...80,211,657 		JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO
IEA		 MGI:1856959 (PMID:15565184), (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:15565184 PMID:21052544 GO_REF:0000107 NCBI chr16:81,451,941...81,462,046
Ensembl chr16:74,749,662...74,759,774 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:1353425|MGI:95778 (PMID:21124780) RGD PMID:21124780 NCBI chr 9:46,943,353...46,989,862
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA		 (PMID:22447858), (PMID:25147295)
GO_REF:0000107		 RGD
Ensembl		 PMID:22447858 PMID:25147295 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Crx cone-rod homeobox acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 1:85,667,971...85,681,852
Ensembl chr 1:76,540,141...76,545,818 		JBrowse link
G Dclk1 doublecortin-like kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:141,567,215...141,861,088
Ensembl chr 2:139,417,163...139,710,956 		JBrowse link
G Dcx doublecortin involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:112,227,455...112,370,291
Ensembl chr  X:107,430,767...107,507,476 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO
ISS		 (PMID:19389377)
GO_REF:0000024		 RGD
UniProt		 PMID:19389377 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:37691820)		 Ensembl
RGD		 PMID:37691820 GO_REF:0000107 NCBI chr 2:196,724,052...196,752,645
Ensembl chr 2:194,035,818...194,063,403 		JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18778704 RGD:7175073 NCBI chr 1:205,825,937...205,829,124
Ensembl chr 1:196,396,366...196,399,553 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IEP RGD PMID:23954924 RGD:11251759 NCBI chr17:19,891,313...19,982,770
Ensembl chr17:19,685,215...19,776,661 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:110,280,059...110,295,070
Ensembl chr 8:110,279,979...110,295,067 		JBrowse link
G Gdnf glial cell derived neurotrophic factor IEP RGD PMID:16650834 RGD:2324945 NCBI chr 2:58,621,327...58,647,242
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA		 MGI:1341818|MGI:1353425 (PMID:21052544), (PMID:21124780)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 PMID:21124780 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnb1 G protein subunit beta 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 5:171,357,778...171,424,489
Ensembl chr 5:166,075,629...166,142,124 		JBrowse link
G Grm6 glutamate metabotropic receptor 6 acts_upstream_of_or_within ISO
IEA		 MGI:3605835 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr10:35,669,003...35,683,729
Ensembl chr10:35,167,985...35,182,717 		JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO MGI:3762618 (PMID:28728022) RGD PMID:28728022 NCBI chr10:87,887,834...87,893,938
Ensembl chr10:87,387,638...87,393,775 		JBrowse link
G Hpca hippocalcin IEP RGD PMID:7789406 RGD:9686441 NCBI chr 5:146,739,978...146,750,961
Ensembl chr 5:141,455,613...141,463,841 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:251,500,427...251,526,529
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Il4 interleukin 4 IEP RGD PMID:23070471 RGD:7829830 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 4:58,767,230...58,782,825
Ensembl chr 4:57,801,831...57,819,076 		JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 8:118,135,204...118,139,892
Ensembl chr 8:109,256,728...109,261,359 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase acts_upstream_of_or_within ISO
IEA		 MGI:3580706 (PMID:15345036)
GO_REF:0000107		 RGD
Ensembl		 PMID:15345036 GO_REF:0000107 NCBI chr10:102,539,935...102,545,986
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1344394 (PMID:19907020)		 Ensembl
RGD		 PMID:19907020 GO_REF:0000107 NCBI chr 8:118,056,899...118,069,090
Ensembl chr 8:109,178,409...109,190,549 		JBrowse link
G Lamc3 laminin subunit gamma 3 acts_upstream_of_or_within ISO MGI:99916 (PMID:19907020) RGD PMID:19907020 NCBI chr 3:35,562,989...35,624,460
Ensembl chr 3:15,165,220...15,226,697 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107		 RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO
IEA		 (PMID:10741426)
GO_REF:0000107		 RGD
Ensembl		 PMID:10741426 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO
IEA		 MGI:97490 (PMID:19146846)
GO_REF:0000107		 RGD
Ensembl		 PMID:19146846 GO_REF:0000107 NCBI chr 3:42,523,345...42,553,646
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Lif LIF, interleukin 6 family cytokine IDA RGD PMID:16643897 RGD:2326157 NCBI chr14:83,354,602...83,364,053
Ensembl chr14:79,134,574...79,140,482 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 1:31,594,621...31,644,946
Ensembl chr 1:29,766,071...29,816,401 		JBrowse link
G Max MYC associated factor X IEP RGD PMID:14603520 RGD:2316820 NCBI chr 6:101,369,989...101,395,333
Ensembl chr 6:95,636,858...95,662,137 		JBrowse link
G Mdm1 Mdm1 nuclear protein involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:2664154 (PMID:21052544)		 GO_Central
RGD		 PMID:21052544 GO_REF:0000033 NCBI chr 7:55,615,459...55,651,889
Ensembl chr 7:53,729,610...53,766,034 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:21052544)		 Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 3:136,391,936...136,498,366
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 8:53,342,483...53,347,696
Ensembl chr 8:44,445,697...44,450,859 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO
IEA		 (PMID:27654426)
GO_REF:0000107		 RGD
Ensembl		 PMID:27654426 GO_REF:0000107 NCBI chr 2:125,749,994...125,784,689
Ensembl chr 2:123,816,614...123,857,971 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within ISO MGI:2676847|MGI:3619440 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:59,752,246...59,752,307
Ensembl chr 4:58,784,818...58,784,879 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:59,756,044...59,756,153
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:59,755,841...59,755,946
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:16899069 RGD:2317091 NCBI chr 5:77,853,560...77,967,653
Ensembl chr 5:73,058,121...73,171,932 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2386445 (PMID:11283949), (PMID:9356462)		 Ensembl
RGD		 PMID:9356462 PMID:11283949 GO_REF:0000107 NCBI chr10:53,891,955...54,024,032
Ensembl chr10:53,394,389...53,525,165 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1934018 (PMID:26607664)		 Ensembl
RGD		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2676199 (PMID:9071226)		 Ensembl
RGD		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3605480 (PMID:15728677)		 Ensembl
RGD		 PMID:15728677 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Neurod4 neuronal differentiation 4 IEP RGD PMID:15345241 RGD:2311603 NCBI chr 7:7,740,852...7,828,052
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Nfia nuclear factor I/A acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:6280648 (PMID:31128945)		 Ensembl
RGD		 PMID:31128945 GO_REF:0000107 NCBI chr 5:117,359,006...117,897,391
Ensembl chr 5:112,436,644...112,775,885 		JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO
IEA		 MGI:5052268 (PMID:31128945)
GO_REF:0000107		 RGD
Ensembl		 PMID:31128945 GO_REF:0000107 NCBI chr 5:101,805,168...102,020,618
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802570 (PMID:31128945) RGD PMID:31128945 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:16639026 RGD:7771562 NCBI chr 4:11,686,088...11,706,604
Ensembl chr 4:10,793,834...10,814,166 		JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO (PMID:19208653) RGD PMID:19208653 NCBI chr 3:135,413,927...135,469,505
Ensembl chr 3:114,960,650...115,016,234 		JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 5:168,270,522...168,356,393
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO
IEA		 MGI:2176490|MGI:2176560 (PMID:11997145), (PMID:16702404)
GO_REF:0000107		 RGD
Ensembl		 PMID:11997145 PMID:16702404 GO_REF:0000107 NCBI chr20:47,632,347...47,653,464
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1346317 (PMID:12407160), (PMID:21052544)		 Ensembl
RGD		 PMID:12407160 PMID:21052544 GO_REF:0000107 NCBI chr 8:69,261,343...69,269,081
Ensembl chr 8:60,366,124...60,373,163 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IEP RGD PMID:22714110 RGD:124713571 NCBI chr 3:62,098,739...62,115,926
Ensembl chr 3:41,689,851...41,697,877 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO
IEA		 (PMID:25542970)
GO_REF:0000107		 RGD
Ensembl		 PMID:25542970 GO_REF:0000107 NCBI chr17:5,560,558...5,875,899
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:15505078 RGD:1547836 NCBI chr11:84,612,943...84,690,025
Ensembl chr11:71,109,873...71,185,109 		JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO MGI:1341818|MGI:95778 (PMID:21124780) RGD PMID:21124780 NCBI chr16:9,926,638...9,935,810
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Pax4 paired box 4 involved_in IEP
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:19012751 GO_REF:0000033, RGD:2311636 NCBI chr 4:58,023,873...58,032,265
Ensembl chr 4:57,058,462...57,063,408 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in		 IEP
IEA
ISO
IBA		 GO_REF:0000107
MGI:96785 (PMID:19146846)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:19146846 PMID:19012751 GO_REF:0000033 GO_REF:0000107, RGD:2311636 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pde6a phosphodiesterase 6A involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:21052544)		 GO_Central
RGD		 PMID:21052544 GO_REF:0000033 NCBI chr18:56,947,249...57,019,015
Ensembl chr18:54,676,863...54,748,816 		JBrowse link
G Pde6b phosphodiesterase 6B acts_upstream_of_or_within
involved_in		 IEA
ISO
IBA		 GO_REF:0000107
(PMID:21052544)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr14:1,468,302...1,511,435
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pfdn5 prefoldin subunit 5 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 7:135,330,364...135,335,102
Ensembl chr 7:133,451,453...133,456,516 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2176272|MGI:3582493 (PMID:8637595), (PMID:9630743)		 Ensembl
RGD		 PMID:8637595 PMID:9630743 GO_REF:0000107 NCBI chr19:46,390,958...46,394,599
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO
IEA		 MGI:1856523|MGI:6367794|MGI:97998 (PMID:15964665), (PMID:21052544), (PMID:28053051)
GO_REF:0000107		 RGD
Ensembl		 PMID:15964665 PMID:21052544 PMID:28053051 GO_REF:0000107 NCBI chr 9:21,563,770...21,579,074
Ensembl chr 9:14,066,156...14,081,454 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 PMID:8453763 RGD:9831439, RGD:9831456 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (PMID:11562477) RGD PMID:11562477 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Rd3 RD3 regulator of GUCY2D acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 (PMID:21052544)
GO_REF:0000107
GO_REF:0000033
(PMID:8486383)		 RGD
Ensembl
GO_Central		 PMID:8486383 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr13:106,060,657...106,097,063
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
G Ret ret proto-oncogene IEP RGD PMID:16650834 RGD:2324945 NCBI chr 4:152,998,344...153,040,556
Ensembl chr 4:151,326,431...151,368,176 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:21052544)		 Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 4:150,653,205...150,658,367
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rnpep arginyl aminopeptidase IEP RGD PMID:15500823 RGD:2325937 NCBI chr13:49,251,259...49,271,440
Ensembl chr13:46,699,463...46,717,998 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA		 MGI:102791|MGI:2181662 (PMID:28053051)
GO_REF:0000107		 RGD
Ensembl		 PMID:28053051 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO		 GO_REF:0000024
(PMID:23652001)		 UniProt
RGD		 PMID:23652001 GO_REF:0000024 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:21052544)		 GO_Central
Ensembl
RGD		 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:19,918,728...20,380,811
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rp1l1 RP1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:42,435,803...42,447,165
Ensembl chr15:38,259,928...38,270,316 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within ISO MGI:1856685 (PMID:10049578), (PMID:9331275) RGD PMID:9331275 PMID:10049578 NCBI chr11:58,122,997...58,128,405
Ensembl chr11:44,653,937...44,659,370 		JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 IEP RGD PMID:2647502 RGD:5133699 NCBI chr 1:166,235,904...166,260,206
Ensembl chr 1:156,823,960...156,848,261 		JBrowse link
G Scaper S-phase cyclin A-associated protein in the ER acts_upstream_of_or_within ISO (PMID:28794130) RGD PMID:28794130 NCBI chr 8:64,828,789...65,228,240
Ensembl chr 8:55,933,306...56,332,122 		JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:21738387 RGD:8655555 NCBI chr10:60,748,504...60,760,898
Ensembl chr10:60,249,708...60,262,646 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:28703795)		 Ensembl
RGD		 PMID:28703795 GO_REF:0000107 NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO
IEA		 (PMID:37862028)
GO_REF:0000107		 RGD
Ensembl		 PMID:37862028 GO_REF:0000107 NCBI chr19:64,432,524...64,468,852
Ensembl chr19:47,525,301...47,554,726 		JBrowse link
G Slc4a5 solute carrier family 4 member 5 acts_upstream_of_or_within ISO (PMID:21705333) RGD PMID:21705333 NCBI chr 4:117,267,803...117,368,024
Ensembl chr 4:115,725,592...115,810,323 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98371 (PMID:19490914)		 UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:15,089,357...15,094,345
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98370 (PMID:19490914)		 UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:4440463 (PMID:20159594)		 Ensembl
RGD		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA		 MGI:3852642 (PMID:20711468)
GO_REF:0000107		 RGD
Ensembl		 PMID:20711468 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:26,115,150...26,167,465
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:18973577)		 Ensembl
RGD		 PMID:18973577 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:165,791,101...165,808,669
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 acts_upstream_of_or_within ISO (PMID:24791901) RGD PMID:24791901 NCBI chr 6:111,214,048...111,431,892
Ensembl chr 6:105,483,191...105,700,934 		JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:172,386,772...172,465,791
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr20:6,413,901...6,425,833
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr15:84,888,847...84,942,095
Ensembl chr15:78,485,315...78,527,355
Ensembl chr 3:78,485,315...78,527,355 		JBrowse link
G Ush2a usherin IEP RGD PMID:12160733 RGD:634438 NCBI chr13:102,368,783...103,035,230
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO
IEA		 (PMID:10595508)
GO_REF:0000107		 RGD
Ensembl		 PMID:10595508 GO_REF:0000107 NCBI chr 4:117,753,180...117,777,242
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 3:154,888,558...154,962,519
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
G Zfp513 zinc finger protein 513 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20797688)		 UniProt
Ensembl
RGD		 PMID:20797688 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:30,894,153...30,897,414
Ensembl chr 6:25,174,178...25,177,439 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Arl6 ARF like GTPase 6 acts_upstream_of_or_within ISO
IEA		 MGI:4442928|MGI:5310744 (PMID:20333246), (PMID:22139371)
GO_REF:0000107		 RGD
Ensembl		 PMID:20333246 PMID:22139371 GO_REF:0000107 NCBI chr11:40,711,878...40,738,254
Ensembl chr11:40,712,022...40,737,937 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO
IEA		 (PMID:24413176)
GO_REF:0000107		 RGD
Ensembl		 PMID:24413176 GO_REF:0000107 NCBI chr15:37,993,507...38,526,408
Ensembl chr15:33,819,755...34,350,223 		JBrowse link
G Calb1 calbindin 1 involved_in ISO
IEA		 (PMID:10741426)
GO_REF:0000107		 RGD
Ensembl		 PMID:10741426 GO_REF:0000107 NCBI chr 5:34,172,612...34,199,555
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA		 (PMID:17234588)
GO_REF:0000107		 RGD
Ensembl		 PMID:17234588 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:49,391,385...49,976,861
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1341907 (PMID:21903076)		 Ensembl
RGD		 PMID:21903076 GO_REF:0000107 NCBI chr 8:20,972,840...21,555,679
Ensembl chr 8:12,694,019...13,273,135 		JBrowse link
G Fjx1 four-jointed box kinase 1 acts_upstream_of_or_within ISO
IEA		 MGI:2444314 (PMID:21903076)
GO_REF:0000107		 RGD
Ensembl		 PMID:21903076 GO_REF:0000107 NCBI chr 3:109,229,223...109,231,324
Ensembl chr 3:88,774,220...88,776,321 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO
IEA		 (PMID:15363391)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363391 GO_REF:0000107 NCBI chr12:47,997,308...48,020,526
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO
IEA		 (PMID:20579985)
GO_REF:0000107		 RGD
Ensembl		 PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:30,503,416...30,509,396
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107		 RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:10741426), (PMID:18094249)		 UniProt
Ensembl
RGD		 PMID:10741426 PMID:18094249 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Megf11 multiple EGF-like-domains 11 involved_in ISO (PMID:22407321) RGD PMID:22407321 NCBI chr 8:73,787,568...74,113,228
Ensembl chr 8:64,892,387...65,216,061 		JBrowse link
G Mir145 microRNA 145 IMP RGD PMID:34291866 RGD:155260301 NCBI chr18:57,369,983...57,370,070
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:29654250)
GO_REF:0000107		 RGD
Ensembl		 PMID:29654250 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Prom1 prominin 1 involved_in ISO (PMID:19228982) RGD PMID:19228982 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:17075007)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17075007 GO_REF:0000024 GO_REF:0000107 NCBI chr17:86,959,621...86,961,475
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:14623235)		 UniProt
Ensembl
RGD		 PMID:14623235 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:114,086,380...114,791,000
Ensembl chr 9:106,639,573...107,343,698 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:78,415,765...78,444,116
Ensembl chr 1:69,373,113...69,400,908 		JBrowse link
G Rs1 retinoschisin 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2179757|MGI:3056058 (PMID:11983912), (PMID:15326152)		 Ensembl
RGD		 PMID:11983912 PMID:15326152 GO_REF:0000107 NCBI chr  X:37,771,135...37,800,894
Ensembl chr  X:33,963,657...33,992,115 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO
IEA		 (PMID:26287463)
GO_REF:0000107		 RGD
Ensembl		 PMID:26287463 GO_REF:0000107 NCBI chr10:99,324,047...99,601,683
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2655190 (PMID:19766171)
GO_REF:0000107
MGI:2655190 (PMID:29677370)		 RGD
Ensembl		 PMID:19766171 PMID:29677370 GO_REF:0000107 NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20607706) RGD PMID:20607706 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO
IEA		 (PMID:20607706)
GO_REF:0000107		 RGD
Ensembl		 PMID:20607706 GO_REF:0000107 NCBI chr 9:29,282,703...29,312,568
Ensembl chr 9:21,786,258...21,814,520 		JBrowse link
G Tspan12 tetraspanin 12 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:19837033)		 UniProt
Ensembl
RGD		 PMID:19837033 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:51,279,562...51,355,030
Ensembl chr 4:50,313,772...50,389,246 		JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:102,402,622...102,405,732
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:12915475)
GO_REF:0000107
(PMID:17234588), (PMID:25147295)		 RGD
Ensembl		 PMID:12915475 PMID:17234588 PMID:25147295 GO_REF:0000107 NCBI chr13:53,352,932...53,540,019
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:19389377)		 UniProt
RGD		 PMID:19389377 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO MGI:6693686 (PMID:32265257) RGD PMID:32265257 NCBI chr11:57,787,914...57,887,450
Ensembl chr11:44,318,836...44,418,382 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA		 (PMID:15346351)
GO_REF:0000107		 RGD
Ensembl		 PMID:15346351 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:18985738) RGD PMID:18985738 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 acts_upstream_of_or_within ISO MGI:2159011|MGI:2673381 (PMID:20144606) RGD PMID:20144606 NCBI chr 9:111,698,913...111,855,257
Ensembl chr 9:104,252,001...104,408,349 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO
IEA		 (PMID:27008858)
GO_REF:0000107		 RGD
Ensembl		 PMID:27008858 GO_REF:0000107 NCBI chr 5:140,510,933...140,525,828
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:15716406)
GO_REF:0000107		 RGD
Ensembl		 PMID:15716406 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3605481 (PMID:15728677)		 Ensembl
RGD		 PMID:15728677 GO_REF:0000107 NCBI chr11:67,825,296...67,931,999
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IEA		 (PMID:18654668)
GO_REF:0000107		 RGD
Ensembl		 PMID:18654668 GO_REF:0000107 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3701996 (PMID:17301087)		 Ensembl
RGD		 PMID:17301087 GO_REF:0000107 NCBI chr17:86,959,621...86,961,475
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:20300562)		 Ensembl
RGD		 PMID:20300562 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rp1 RP1, axonemal microtubule associated acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:21052544)		 Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 5:19,918,728...20,380,811
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2386674 (PMID:10725384)		 Ensembl
RGD		 PMID:10725384 GO_REF:0000107 NCBI chr  X:15,238,961...15,299,004
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:3625176 (PMID:16651659) RGD PMID:16651659 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1856112 (PMID:16854970), (PMID:8630490)		 Ensembl
RGD		 PMID:8630490 PMID:16854970 GO_REF:0000107 NCBI chr 6:109,932,943...109,972,005
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B involved_in ISO
IEA		 (PMID:19903896)
GO_REF:0000107		 RGD
Ensembl		 PMID:19903896 GO_REF:0000107 NCBI chr 8:128,016,589...128,056,193
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in ISO (PMID:19903896) RGD PMID:19903896 NCBI chr 7:134,117,917...134,135,306
Ensembl chr 7:132,239,729...132,256,591 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO
IEA		 (PMID:19903896)
GO_REF:0000107		 RGD
Ensembl		 PMID:19903896 GO_REF:0000107 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO
IEA		 MGI:2154690 (PMID:19005183)
GO_REF:0000107		 RGD
Ensembl		 PMID:19005183 GO_REF:0000107 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Fzd4 frizzled class receptor 4 acts_upstream_of_or_within ISO
IEA		 MGI:2387667 (PMID:23217714), (PMID:25083995), (PMID:25414188)
GO_REF:0000107		 RGD
Ensembl		 PMID:23217714 PMID:25083995 PMID:25414188 GO_REF:0000107 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA		 MGI:2386679 (PMID:21212189)
GO_REF:0000107		 RGD
Ensembl		 PMID:21212189 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA		 MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107		 RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA		 MGI:2183279|MGI:3604604 (PMID:22272305), (PMID:25083995)
GO_REF:0000107		 RGD
Ensembl		 PMID:22272305 PMID:25083995 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Mir218-2 microRNA 218-2 acts_upstream_of_or_within ISO (PMID:20947829) RGD PMID:20947829 NCBI chr10:20,572,523...20,572,632
Ensembl chr10:20,068,451...20,068,560 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:40,859,769...40,859,843
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
G Mir23b microRNA 23b acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr17:1,819,386...1,819,482
Ensembl chr17:1,813,667...1,813,763 		JBrowse link
G Mir24-2 microRNA 24-2 acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:40,859,455...40,859,562
Ensembl chr19:23,954,683...23,954,790 		JBrowse link
G Mir27a microRNA 27a acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:40,859,603...40,859,689
Ensembl chr19:23,954,831...23,954,917 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr17:1,819,147...1,819,243
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2676199|MGI:4414794 (PMID:15716406), (PMID:18978344), (PMID:23217714), (PMID:25083995), (PMID:25414188), (PMID:28575130), (PMID:29654250), (PMID:29715368)		 Ensembl
RGD		 PMID:15716406 PMID:18978344 PMID:23217714 PMID:25083995 PMID:25414188 More... GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO
IEA		 (PMID:25414188)
GO_REF:0000107		 RGD
Ensembl		 PMID:25414188 GO_REF:0000107 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA
ISO
ISS		 GO_REF:0000107
UniProtKB:P05622 (PMID:11239463)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:11239463 GO_REF:0000024 GO_REF:0000107 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:P26618 (PMID:11239463), (PMID:14624252)		 UniProt
RGD		 PMID:11239463 PMID:14624252 GO_REF:0000024 NCBI chr18:56,770,348...56,809,228
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA		 (PMID:20300562)
GO_REF:0000107		 RGD
Ensembl		 PMID:20300562 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO
IEA		 (PMID:29715368)
GO_REF:0000107		 RGD
Ensembl		 PMID:29715368 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within ISO (PMID:31698979) RGD PMID:31698979 NCBI chr16:8,126,630...8,206,556
Ensembl chr16:8,120,336...8,200,269 		JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 acts_upstream_of_or_within ISO
IEA		 MGI:3812708 (PMID:22535667)
GO_REF:0000107		 RGD
Ensembl		 PMID:22535667 GO_REF:0000107 NCBI chr10:54,149,372...54,162,128
Ensembl chr10:53,650,553...53,663,913 		JBrowse link
G Clic4 chloride intracellular channel 4 acts_upstream_of_or_within ISO
IEA		 MGI:3838012 (PMID:19197003)
GO_REF:0000107		 RGD
Ensembl		 PMID:19197003 GO_REF:0000107 NCBI chr 5:152,737,371...152,797,118
Ensembl chr 5:147,453,712...147,513,452 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:12172548), (PMID:15024691)
GO_REF:0000107
MGI:102570|MGI:1278315|MGI:4412057 (PMID:19837032)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:12172548 PMID:15024691 PMID:19837032 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within IMP
IEA
ISO		 GO_REF:0000107
MGI:102570|MGI:108520|MGI:2183279|MGI:3774282 (PMID:11956231), (PMID:18263894), (PMID:19837032)		 Ensembl
RGD		 PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 GO_REF:0000107, RGD:40902996 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:108520|MGI:1278315|MGI:2676199 (PMID:18978344), (PMID:19837032)		 Ensembl
RGD		 PMID:18978344 PMID:19837032 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO
IEA		 (PMID:24401374)
GO_REF:0000107		 RGD
Ensembl		 PMID:24401374 GO_REF:0000107 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Rhoj ras homolog family member J acts_upstream_of_or_within ISO
IEA		 MGI:4365246 (PMID:22535667)
GO_REF:0000107		 RGD
Ensembl		 PMID:22535667 GO_REF:0000107 NCBI chr 6:99,771,104...99,853,366
Ensembl chr 6:94,035,483...94,118,275 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:102,402,622...102,405,732
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3056615 (PMID:16249514)		 Ensembl
RGD		 PMID:16249514 GO_REF:0000107 NCBI chr 1:210,857,223...210,872,431
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:24467707) RGD PMID:24467707 NCBI chr 5:164,527,083...164,677,037
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:90,468,696...90,556,522
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Irx5 iroquois homeobox 5 acts_upstream_of_or_within ISO
IEA		 MGI:1890816 (PMID:18322081)
GO_REF:0000107		 RGD
Ensembl		 PMID:18322081 GO_REF:0000107 NCBI chr19:30,812,033...30,816,885
Ensembl chr19:14,624,225...14,642,318 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:30,503,416...30,509,396
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3052661|MGI:3605621 (PMID:28199486)		 Ensembl
RGD		 PMID:28199486 GO_REF:0000107 NCBI chr20:49,542,465...49,564,088
Ensembl chr20:47,959,858...47,981,488 		JBrowse link
G Vsx1 visual system homeobox 1 acts_upstream_of_or_within ISO
IEA		 MGI:1859086|MGI:3033929|MGI:3040317 (PMID:14745032), (PMID:15043821), (PMID:18322081)
GO_REF:0000107		 RGD
Ensembl		 PMID:14745032 PMID:15043821 PMID:18322081 GO_REF:0000107 NCBI chr 3:159,974,693...159,982,292
Ensembl chr 3:139,514,270...139,521,869 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1856112 (PMID:8630490)		 Ensembl
RGD		 PMID:8630490 GO_REF:0000107 NCBI chr 6:109,932,943...109,972,005
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 involved_in ISO (PMID:30146259) RGD PMID:30146259 NCBI chr 7:91,115,894...91,263,823
Ensembl chr 7:89,226,463...89,374,378 		JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain involved_in ISO
IEA		 (PMID:20818663)
GO_REF:0000107		 RGD
Ensembl		 PMID:20818663 GO_REF:0000107 NCBI chr16:84,885,597...84,996,482
Ensembl chr16:78,183,533...78,294,412 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:20032512)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:20032512 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in ISO
IEA		 (PMID:15035989)
GO_REF:0000107		 RGD
Ensembl		 PMID:15035989 GO_REF:0000107 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA		 (PMID:27031698)
GO_REF:0000107
(PMID:15024691), (PMID:15346351)		 RGD
Ensembl		 PMID:15024691 PMID:15346351 PMID:27031698 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:18978344), (PMID:22394677), (PMID:28575130)
GO_REF:0000107		 RGD
Ensembl		 PMID:18978344 PMID:22394677 PMID:28575130 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA		 MGI:1857429 (PMID:14517994)
GO_REF:0000107		 RGD
Ensembl		 PMID:14517994 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of ISO MGI:1857430 (PMID:10321489) RGD PMID:10321489 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of ISO
IEA		 MGI:3054837 (PMID:15363390)
GO_REF:0000107		 RGD
Ensembl		 PMID:15363390 GO_REF:0000107 NCBI chr 3:188,266,572...188,268,786
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Faslg Fas ligand acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1856384 (PMID:14517994)		 Ensembl
RGD		 PMID:14517994 GO_REF:0000107 NCBI chr13:76,680,885...76,706,042
Ensembl chr13:74,154,954...74,162,215 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO
IEA		 MGI:3056615 (PMID:16249514)
GO_REF:0000107		 RGD
Ensembl		 PMID:16249514 GO_REF:0000107 NCBI chr 1:210,857,223...210,872,431
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:3608770 (PMID:21052544) RGD PMID:21052544 NCBI chr 9:46,943,353...46,989,862
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:23001562) RGD PMID:23001562 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2664293 (PMID:20203194)		 Ensembl
RGD		 PMID:20203194 GO_REF:0000107 NCBI chr 6:135,107,072...135,108,933
Ensembl chr 6:129,285,749...129,286,660 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3588845 (PMID:17065522), (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:17065522 PMID:21052544 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 acts_upstream_of_or_within ISO
IEA		 (PMID:21052544)
GO_REF:0000107		 RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 2:51,228,710...51,632,806
Ensembl chr 2:49,495,771...49,899,774 		JBrowse link
G Mir124-1 microRNA 124-1 acts_upstream_of_or_within ISO MGI:3618700|MGI:5307015|MGI:5307017 (PMID:21857657) RGD PMID:21857657 NCBI chr15:43,017,834...43,017,918
Ensembl chr15:38,842,014...38,842,098 		JBrowse link
G Mir124-2 microRNA 124-2 acts_upstream_of_or_within ISO MGI:2676807 (PMID:21857657) RGD PMID:21857657 NCBI chr 2:102,051,095...102,051,203
Ensembl chr 2:100,134,866...100,134,974 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within ISO MGI:2676847|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:59,752,246...59,752,307
Ensembl chr 4:58,784,818...58,784,879 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:59,756,044...59,756,153
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:59,755,841...59,755,946
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:21052544)		 Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 1:245,322,015...245,377,874
Ensembl chr 1:235,909,775...235,965,315 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:16574740)		 UniProt
Ensembl
RGD		 PMID:16574740 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO
IEA		 (PMID:14507858)
GO_REF:0000107		 RGD
Ensembl		 PMID:14507858 GO_REF:0000107 NCBI chr 5:19,918,728...20,380,811
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of IEA
ISO		 GO_REF:0000107
(PMID:20203194)		 Ensembl
RGD		 PMID:20203194 GO_REF:0000107 NCBI chr15:10,115,954...10,465,231
Ensembl chr15:7,685,180...7,882,916 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISO
ISS		 (PMID:10567740)
GO_REF:0000024		 RGD
UniProt		 PMID:10567740 GO_REF:0000024 NCBI chr 8:53,286,396...53,291,541
Ensembl chr 8:44,389,513...44,394,659 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:36125046)		 Ensembl
RGD		 PMID:36125046 GO_REF:0000107 NCBI chr 7:48,637,324...48,640,395
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA		 MGI:2152779|MGI:95779 (PMID:19815523)
GO_REF:0000107		 RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA		 MGI:3588845|MGI:95778 (PMID:19815523)
GO_REF:0000107		 RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO
IEA		 MGI:1933835|MGI:3052237 (PMID:16452096)
GO_REF:0000107		 RGD
Ensembl		 PMID:16452096 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:23844226), (PMID:25991857) RGD PMID:23844226 PMID:25991857 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Cldn19 claudin 19 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:27593915), (PMID:30937396)
(PMID:30937396)		 UniProt
Ensembl
RGD		 PMID:27593915 PMID:30937396 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:138,148,234...138,155,672
Ensembl chr 5:132,863,267...132,868,227 		JBrowse link
G Cldn3 claudin 3 involved_in ISO
IEA		 (PMID:27593915)
GO_REF:0000107		 RGD
Ensembl		 PMID:27593915 GO_REF:0000107 NCBI chr12:27,345,075...27,346,547
Ensembl chr12:21,708,398...21,711,001 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1934258 (PMID:18582859)		 Ensembl
RGD		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISO
IEA		 (PMID:11724781)
GO_REF:0000107		 RGD
Ensembl		 PMID:11724781 GO_REF:0000107 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO
IEA		 (PMID:27008858)
GO_REF:0000107		 RGD
Ensembl		 PMID:27008858 GO_REF:0000107 NCBI chr 5:140,510,933...140,525,828
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA		 MGI:2676199 (PMID:9071226)
GO_REF:0000107		 RGD
Ensembl		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Pax2 paired box 2 involved_in ISO
ISS		 (PMID:8951055)
GO_REF:0000024		 RGD
UniProt		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO
IEA		 (PMID:37862028)
GO_REF:0000107		 RGD
Ensembl		 PMID:37862028 GO_REF:0000107 NCBI chr19:64,432,524...64,468,852
Ensembl chr19:47,525,301...47,554,726 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:4440463 (PMID:20159594)		 Ensembl
RGD		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,902,281...36,133,161
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within ISO
IEA		 MGI:5811600 (PMID:33064130)
GO_REF:0000107		 RGD
Ensembl		 PMID:33064130 GO_REF:0000107 NCBI chr 1:152,418,929...152,692,405
Ensembl chr 1:143,006,344...143,221,171 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO MGI:3576051 (PMID:16000322) RGD PMID:16000322 NCBI chr 4:119,683,085...119,783,471
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO
IEA		 MGI:3045473 (PMID:15173597)
GO_REF:0000107		 RGD
Ensembl		 PMID:15173597 GO_REF:0000107 NCBI chr 8:68,627,739...68,661,232
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO
IEA		 MGI:3054837 (PMID:17255172)
GO_REF:0000107		 RGD
Ensembl		 PMID:17255172 GO_REF:0000107 NCBI chr 3:188,266,572...188,268,786
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:17921253) RGD PMID:17921253 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO MGI:3665263 (PMID:16877424) RGD PMID:16877424 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA		 MGI:1934018 (PMID:17712420)
GO_REF:0000107		 RGD
Ensembl		 PMID:17712420 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Nrl neural retina leucine zipper involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2152376 (PMID:11694879)		 GO_Central
Ensembl
RGD		 PMID:11694879 GO_REF:0000033 GO_REF:0000107 NCBI chr15:32,977,023...32,981,442
Ensembl chr15:29,008,104...29,009,832 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO
IEA		 MGI:3039928 (PMID:10516311)
GO_REF:0000107		 RGD
Ensembl		 PMID:10516311 GO_REF:0000107 NCBI chr17:5,560,558...5,875,899
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:16574740), (PMID:19805139)		 UniProt
Ensembl
RGD		 PMID:16574740 PMID:19805139 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO
IEA		 (PMID:14507858)
GO_REF:0000107		 RGD
Ensembl		 PMID:14507858 GO_REF:0000107 NCBI chr 5:19,918,728...20,380,811
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) RGD PMID:33603070 NCBI chr 5:172,113,900...172,142,026
Ensembl chr 5:166,831,663...166,850,009 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO
IEA		 (PMID:33603070)
GO_REF:0000107		 RGD
Ensembl		 PMID:33603070 GO_REF:0000107 NCBI chr 2:112,623,135...112,644,269
Ensembl chr 2:112,624,942...112,639,549 		JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 acts_upstream_of_or_within ISO MGI:4421441 (PMID:19966281) RGD PMID:19966281 NCBI chr 1:127,130,686...127,247,219
Ensembl chr 1:117,718,896...117,834,605 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
(PMID:36125046)		 Ensembl
RGD		 PMID:36125046 GO_REF:0000107 NCBI chr 7:48,637,324...48,640,395
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of ISO
IEA		 (PMID:15207851)
GO_REF:0000107		 RGD
Ensembl		 PMID:15207851 GO_REF:0000107 NCBI chr 1:219,312,512...219,314,535
Ensembl chr 1:209,887,854...209,889,877 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2152779|MGI:95779 (PMID:19815523)		 Ensembl
RGD		 PMID:19815523 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:3588845|MGI:95778 (PMID:19815523)		 Ensembl
RGD		 PMID:19815523 GO_REF:0000107 NCBI chr 2:198,414,568...198,431,532
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:2676199 (PMID:9071226)		 Ensembl
RGD		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Ptn pleiotrophin IMP RGD PMID:16914133 RGD:9831439 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rorb RAR-related orphan receptor B acts_upstream_of_or_within ISO
IEA		 MGI:2158692 (PMID:25296752)
GO_REF:0000107		 RGD
Ensembl		 PMID:25296752 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98371 (PMID:19490914)		 UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:15,089,357...15,094,345
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within		 ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
MGI:98370 (PMID:19490914)		 UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO
IEA		 (PMID:15207851)
GO_REF:0000107		 RGD
Ensembl		 PMID:15207851 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:164,527,083...164,677,037
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA
ISO		 GO_REF:0000107
MGI:1934018 (PMID:26607664)		 Ensembl
RGD		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 RGD:9831439 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO
IEA		 MGI:4947230 (PMID:32960171)
GO_REF:0000107		 RGD
Ensembl		 PMID:32960171 GO_REF:0000107 NCBI chr 4:150,653,205...150,658,367
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
trabecular meshwork development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:23979599)		 UniProt
Ensembl
RGD		 PMID:23979599 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Foxe3 forkhead box E3 involved_in ISO
IEA
ISS		 (PMID:17064680)
GO_REF:0000107		 RGD
Ensembl		 PMID:17064680 PMID:17064680 GO_REF:0000107, RGD:10047226 NCBI chr 5:128,444,912...128,446,494
Ensembl chr 5:128,445,594...128,446,454 		JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463|MGI:2386570|MGI:3714802 (PMID:20568247) RGD PMID:20568247 NCBI chr 3:37,257,025...37,338,675
Ensembl chr 3:16,862,195...16,940,899 		JBrowse link
vertebrate eye-specific patterning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qa complement C1q A chain involved_in ISO (PMID:18083105) RGD PMID:18083105 NCBI chr 5:154,417,086...154,419,933
Ensembl chr 5:149,133,636...149,136,534 		JBrowse link
G C3 complement C3 involved_in IEA
ISO		 GO_REF:0000107
(PMID:18083105)		 Ensembl
RGD		 PMID:18083105 GO_REF:0000107 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Itgam integrin subunit alpha M involved_in ISO (PMID:22632727) RGD PMID:22632727 NCBI chr 1:192,089,496...192,139,947
Ensembl chr 1:182,659,000...182,709,503 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    multicellular organismal process 9017
      multicellular organism development 5353
        system development 4635
          sensory system development 508
            visual system development 501
              eye development + 498
              vertebrate eye-specific patterning 3
Path 2
Term Annotations click to browse term
  biological_process 20558
    developmental process 7149
      anatomical structure development 6646
        multicellular organism development 5353
          system development 4635
            sensory system development 508
              visual system development 501
                eye development + 498
                vertebrate eye-specific patterning 3
paths to the root