Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:nucleic acid catabolic process
go back to main search page
Accession:GO:0141188 term browser browse the term
Definition:The cellular DNA metabolic process resulting in the breakdown of a nucleic acid.
Comment:This term should not be used for direct annotation. It should be possible to make a more specific annotation to one of the children of this term.



show annotations for term's descendants           Sort by:
3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:234,749,138...234,931,219 JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO
ISS
(PMID:26489465)
GO_REF:0000024
RGD
UniProt
PMID:26489465 GO_REF:0000024 NCBI chr 2:146,856,469...146,894,577 JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO (PMID:28297718) RGD PMID:28297718 NCBI chr18:28,378,692...28,381,316 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IMP RGD PMID:20805360 RGD:10042974 NCBI chr14:9,918,630...9,938,072 JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISO
ISS
(PMID:16126846), (PMID:28275056)
GO_REF:0000024
RGD
UniProt
PMID:16126846 PMID:28275056 GO_REF:0000024 NCBI chr 9:1,862,555...1,872,403 JBrowse link
G Mov10 Mov10 RNA helicase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr 2:192,292,041...192,315,142 JBrowse link
G Plekhn1 pleckstrin homology domain containing N1 involved_in ISO
IBA
(PMID:29180010)
(PMID:27616329)
GO_REF:0000033
RGD
GO_Central
PMID:27616329 PMID:29180010 GO_REF:0000033 NCBI chr 5:172,087,524...172,095,566 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) RGD PMID:24375645 NCBI chr17:18,275,681...18,288,231 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:26000482) RGD PMID:26000482 NCBI chr13:73,174,075...73,245,762 JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:28335005) RGD PMID:28335005 NCBI chr 5:164,330,452...164,348,435 JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO (PMID:23125361) RGD PMID:23125361 NCBI chr 8:114,193,439...114,250,807 JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr16:19,076,594...19,097,365 JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:19322177), (PMID:23185455), (PMID:26000482), (PMID:26134560)
(PMID:19909337)
UniProt
GO_Central
RGD
PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26134560 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:142,661,193...142,670,051 JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D involved_in ISO (PMID:26134560) RGD PMID:26134560 NCBI chr 1:2,313,110...2,348,820 JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
IEA
ISS
(PMID:11719186), (PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15687258), (PMID:15766526), (PMID:20221403), (PMID:27193233), (PMID:9703499)
(PMID:17288565), (PMID:22701344), (PMID:27193233)
GO_REF:0000104
GO_REF:0000024
RGD
UniProt
PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 More... GO_REF:0000024 GO_REF:0000104 NCBI chr 1:92,796,628...92,799,108 JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:20622884), (PMID:22701344), (PMID:24700863), (PMID:24733888), (PMID:27102483)
(PMID:12198173), (PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:25014217), (PMID:25106868), (PMID:26542173)
UniProt
RGD
PMID:12198173 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 More... GO_REF:0000024 NCBI chr 6:98,930,705...98,935,748 JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (PMID:25106868)
(PMID:20622884), (PMID:22701344)
RGD PMID:20622884 PMID:22701344 PMID:25106868 NCBI chr 6:16,242,622...16,246,662 JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 involved_in ISO
IBA
(PMID:22547059)
GO_REF:0000033
RGD
GO_Central
PMID:22547059 GO_REF:0000033 NCBI chr13:102,509,111...102,529,501 JBrowse link
G Boll boule homolog, RNA binding protein involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:56,734,890...56,859,917 JBrowse link
G Dazl deleted in azoospermia-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:10,695,593...10,712,330 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:27616329)
(PMID:14517288), (PMID:19029303), (PMID:26489465), (PMID:29180010)
UniProt
RGD
PMID:14517288 PMID:19029303 PMID:26489465 PMID:27616329 PMID:29180010 GO_REF:0000024 NCBI chr12:2,640,936...2,684,787 JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO
ISS
(PMID:12034726)
GO_REF:0000024
RGD
UniProt
PMID:12034726 GO_REF:0000024 NCBI chr 5:125,056,848...125,200,543 JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 involved_in ISO
IBA
(PMID:12456657)
GO_REF:0000033
RGD
GO_Central
PMID:12456657 GO_REF:0000033 NCBI chr17:6,507,728...6,510,385 JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:16010978) RGD PMID:16010978 NCBI chr15:24,779,593...24,809,213 JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 involved_in ISO (PMID:14517288), (PMID:15014438), (PMID:20932473) RGD PMID:14517288 PMID:15014438 PMID:20932473 NCBI chr13:45,066,027...45,112,326 JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor involved_in ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:127,952,161...127,956,230 JBrowse link
G Nicol1 NELL2 interacting cell ontogeny regulator 1 involved_in ISO (PMID:38625739) RGD PMID:38625739 NCBI chr14:76,768,145...76,769,661 JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IDA RGD PMID:11696543 RGD:10045987 NCBI chr 7:9,842,574...9,852,332 JBrowse link
G Rbm10 RNA binding motif protein 10 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:19508861)
Ensembl
RGD
PMID:19508861 GO_REF:0000107 NCBI chr  X:1,540,399...1,572,571 JBrowse link
G Rbm38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) RGD PMID:17050675 NCBI chr 3:161,801,577...161,814,381 JBrowse link
G Rbm47 RNA binding motif protein 47 involved_in ISO (PMID:34160127)
(PMID:29844590)
RGD PMID:29844590 PMID:34160127 NCBI chr14:42,407,226...42,545,304 JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:17481916) RGD PMID:17481916 NCBI chr 5:164,330,452...164,348,435 JBrowse link
G Tirap TIR domain containing adaptor protein involved_in ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:41,789,557...41,805,903 JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO
ISS
(PMID:15014438)
GO_REF:0000024
RGD
UniProt
PMID:15014438 GO_REF:0000024 NCBI chr 1:92,796,628...92,799,108 JBrowse link
apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cck cholecystokinin IDA pancreatic acinar cells RGD PMID:11964411 RGD:625521 NCBI chr 8:121,153,499...121,160,194 JBrowse link
G Dffa DNA fragmentation factor subunit alpha involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:159,540,715...159,553,639 JBrowse link
G Dffb DNA fragmentation factor subunit beta involved_in
acts_upstream_of_or_within
IDA
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000002
(PMID:15572351)
(PMID:22253444)
GO_REF:0000107
GO_Central
InterPro
RGD
Ensembl
PMID:15572351 PMID:22253444 PMID:11425895 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107, RGD:628524 NCBI chr 5:169,804,873...169,817,157 JBrowse link
G Dicer1 dicer 1 ribonuclease III involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:123,627,529...123,692,278 JBrowse link
G Dnase1l3 deoxyribonuclease 1L3 acts_upstream_of_or_within
involved_in
TAS
ISO
IBA
(PMID:12050166)
GO_REF:0000033
(PMID:23229555)
RGD
GO_Central
PMID:12050166 PMID:23229555 PMID:9665719 GO_REF:0000033, RGD:728743 NCBI chr15:19,351,683...19,378,536 JBrowse link
G Dnase2 deoxyribonuclease 2, lysosomal involved_in IEA
IBA
GO_REF:0000104
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000104 NCBI chr19:23,244,656...23,247,376 JBrowse link
G Dnase2b deoxyribonuclease 2 beta involved_in IEA
IBA
GO_REF:0000104
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000104 NCBI chr 2:235,470,915...235,515,211 JBrowse link
G Endog endonuclease G acts_upstream_of_or_within ISO MGI:3034030|MGI:3514265 (PMID:14663139) RGD PMID:14663139 NCBI chr 3:13,449,113...13,451,715 JBrowse link
G Exog exo/endonuclease G involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:128,062,688...128,082,529 JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:16153597) RGD PMID:16153597 NCBI chr 8:99,512,971...99,514,500 JBrowse link
G Vps54 VPS54 subunit of GARP complex involved_in IEA
ISO
GO_REF:0000107
MGI:1857091 (PMID:11403940)
Ensembl
RGD
PMID:11403940 GO_REF:0000107 NCBI chr14:95,378,821...95,455,871 JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csde1 cold shock domain containing E1 involved_in ISO
IEA
(PMID:11051545)
GO_REF:0000107
RGD
Ensembl
PMID:11051545 GO_REF:0000107 NCBI chr 2:190,546,015...190,582,787 JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:19029303) RGD PMID:19029303 NCBI chr13:65,602,322...65,639,098 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr14:9,918,630...9,938,072 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO
GO_REF:0000107
(PMID:19029303)
Ensembl
RGD
PMID:19029303 GO_REF:0000107 NCBI chr13:92,609,791...92,618,580 JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:19029303), (PMID:29476152)
UniProt
GO_Central
RGD
PMID:19029303 PMID:29476152 GO_REF:0000024 GO_REF:0000033 NCBI chr10:80,908,300...80,951,097 JBrowse link
G Igf2bp2 insulin-like growth factor 2 mRNA binding protein 2 involved_in ISO
IBA
(PMID:29476152)
GO_REF:0000033
RGD
GO_Central
PMID:29476152 GO_REF:0000033 NCBI chr11:92,378,908...92,478,893 JBrowse link
G Igf2bp3 insulin-like growth factor 2 mRNA binding protein 3 involved_in ISO
IBA
(PMID:29476152)
GO_REF:0000033
RGD
GO_Central
PMID:29476152 GO_REF:0000033 NCBI chr 4:79,391,367...79,525,923 JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr 7:67,777,438...67,789,731 JBrowse link
G Paip1 poly(A) binding protein interacting protein 1 involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr 2:53,255,916...53,282,965 JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in ISO
IBA
IEA
(PMID:11051545), (PMID:19029303)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:11051545 PMID:19029303 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:98,282,358...98,315,412 JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:19029303)
UniProt
RGD
PMID:19029303 GO_REF:0000024 NCBI chr 5:138,167,444...138,188,155 JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in
acts_upstream_of_or_within
ISO (PMID:31439799)
MGI:109382 (PMID:18625844)
RGD PMID:18625844 PMID:31439799 NCBI chr16:51,775,416...51,794,581 JBrowse link
G Dcp1a decapping mRNA 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:5,663,437...5,708,623 JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:152,358,267...152,395,747 JBrowse link
G Dcp2 decapping mRNA 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:36,750,732...36,787,067 JBrowse link
G Dcps decapping enzyme, scavenger involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
GO_REF:0000104
InterPro
GO_Central
UniProt
GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 NCBI chr 8:41,729,507...41,782,222 JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:66,277,345...66,288,852 JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO MGI:1298230 (PMID:18625844) RGD PMID:18625844 NCBI chr 2:137,422,074...137,442,282 JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (PMID:18625844) RGD PMID:18625844 NCBI chr12:12,512,835...12,637,066 JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in ISO
IBA
IEA
ISS
(PMID:20584987), (PMID:20852261)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000024
RGD
GO_Central
InterPro
UniProt
PMID:20584987 PMID:20852261 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:218,255,801...218,287,662 JBrowse link
G Patl2 PAT1 homolog 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:109,072,958...109,087,425 JBrowse link
G St3gal4 ST3 beta-galactoside alpha-2,3-sialyltransferase 4 involved_in IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr 8:33,415,666...33,465,319 JBrowse link
deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcp1a decapping mRNA 1A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:5,663,437...5,708,623 JBrowse link
G Dcp1b decapping mRNA 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:152,358,267...152,395,747 JBrowse link
G Edc3 enhancer of mRNA decapping 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:58,106,147...58,151,685 JBrowse link
G Edc4 enhancer of mRNA decapping 4 involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr19:33,774,062...33,786,054 JBrowse link
DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISO
IEA
(PMID:1627644)
GO_REF:0000107
RGD
Ensembl
PMID:1627644 GO_REF:0000107 NCBI chr15:24,144,595...24,146,785 JBrowse link
G Dffb DNA fragmentation factor subunit beta involved_in ISO (PMID:19944011) RGD PMID:19944011 NCBI chr 5:169,804,873...169,817,157 JBrowse link
G Dnase1 deoxyribonuclease 1 involved_in ISS
ISO
IBA
PMID:29191910
(PMID:29191910)
GO_REF:0000033
RGD
GO_Central
PMID:29191910 PMID:29191910 GO_REF:0000033, RGD:13464261 NCBI chr10:11,498,930...11,505,151 JBrowse link
G Dnase1l1 deoxyribonuclease 1-like 1 involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr  X:152,056,942...152,065,518 JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:5308556 (PMID:21307874)
GO_Central
RGD
PMID:21307874 GO_REF:0000033 NCBI chr10:13,471,850...13,473,447 JBrowse link
G Dnase1l3 deoxyribonuclease 1L3 involved_in ISS
ISO
IEA
PMID:29191910
(PMID:29191910)
GO_REF:0000002
RGD
InterPro
PMID:29191910 PMID:29191910 GO_REF:0000002, RGD:13464261 NCBI chr15:19,351,683...19,378,536 JBrowse link
G Dnase2 deoxyribonuclease 2, lysosomal acts_upstream_of_or_within ISO MGI:2449811 (PMID:15568025), (PMID:18991290) RGD PMID:15568025 PMID:18991290 NCBI chr19:23,244,656...23,247,376 JBrowse link
G Fbh1 F-box DNA helicase 1 acts_upstream_of_or_within ISO (PMID:23361013) RGD PMID:23361013 NCBI chr17:66,749,506...66,787,590 JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 involved_in ISO
IBA
(PMID:11401564)
GO_REF:0000033
RGD
GO_Central
PMID:11401564 GO_REF:0000033 NCBI chr 1:142,234,729...142,246,403 JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23361013)
GO_REF:0000104
RGD
UniProt
PMID:23361013 GO_REF:0000104 NCBI chr 1:202,790,295...202,796,008 JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in ISO
IBA
(PMID:21602889)
GO_REF:0000033
RGD
GO_Central
PMID:21602889 GO_REF:0000033 NCBI chr 3:10,280,654...10,291,003 JBrowse link
G Setmar SET domain and mariner transposase fusion gene involved_in ISO (PMID:20521842), (PMID:21491884), (PMID:24573677) RGD PMID:20521842 PMID:21491884 PMID:24573677 NCBI chr 4:141,046,058...141,058,183 JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:3052754|MGI:5751220 (PMID:18724932), (PMID:19923437), (PMID:20871604), (PMID:23993650), (PMID:25848017)
GO_REF:0000033
RGD
GO_Central
PMID:18724932 PMID:19923437 PMID:20871604 PMID:23993650 PMID:25848017 GO_REF:0000033 NCBI chr 8:118,585,082...118,586,382 JBrowse link
G Trex2 three prime repair exonuclease 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:151,151,862...151,153,470 JBrowse link
DNA replication, removal of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:25,661,652...25,690,598 JBrowse link
G Fen1 flap structure-specific endonuclease 1 involved_in ISO (PMID:18995831) RGD PMID:18995831 NCBI chr 1:216,270,016...216,274,873 JBrowse link
G Rnaseh1 ribonuclease H1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:45,282,849...45,292,258 JBrowse link
G Rnaseh2a ribonuclease H2, subunit A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:40,091,206...40,100,904 JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:16086026) RGD PMID:16086026 NCBI chr 8:62,724,939...62,829,040 JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr18:36,750,732...36,787,067 JBrowse link
G Eri1 exoribonuclease 1 NOT|involved_in ISS
ISO
GO_REF:0000024
(PMID:18172165)
UniProt
RGD
PMID:18172165 GO_REF:0000024 NCBI chr16:56,724,101...56,744,228 JBrowse link
G Exosc10 exosome component 10 involved_in ISO
IBA
(PMID:18172165)
GO_REF:0000033
RGD
GO_Central
PMID:18172165 GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 7:109,928,491...109,931,233 JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr16:66,277,345...66,288,852 JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr17:53,320,739...53,341,500 JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:18172165)
UniProt
Ensembl
RGD
PMID:18172165 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:26,115,150...26,167,465 JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr19:34,984,244...35,042,423 JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in ISS
ISO
GO_REF:0000024
(PMID:18172165)
UniProt
RGD
PMID:18172165 GO_REF:0000024 NCBI chr 1:205,848,691...205,859,767 JBrowse link
G Tut4 terminal uridylyl transferase 4 NOT|involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 5:123,201,723...123,306,582 JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT|involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr17:4,849,287...4,903,542 JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:16086026) RGD PMID:16086026 NCBI chr16:19,076,594...19,097,365 JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:18172165) RGD PMID:18172165 NCBI chr 8:96,527,871...96,637,385 JBrowse link
lncRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr82 WD repeat domain 82 involved_in ISO (PMID:33913806)
(PMID:33767452)
RGD PMID:33767452 PMID:33913806 NCBI chr 8:106,814,569...106,834,535 JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 involved_in ISO (PMID:33913806)
(PMID:33767452)
RGD PMID:33767452 PMID:33913806 NCBI chr 1:77,106,309...77,143,827 JBrowse link
maternal mRNA clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lsm14b LSM family member 14B involved_in ISO (PMID:37889087) RGD PMID:37889087 NCBI chr 3:167,125,633...167,136,417 JBrowse link
miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 involved_in ISO
IBA
(PMID:24141620)
(PMID:23594738), (PMID:25119025)
GO_REF:0000033
RGD
GO_Central
PMID:23594738 PMID:24141620 PMID:25119025 GO_REF:0000033 NCBI chr 9:94,802,056...95,184,523 JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:19703396)
(PMID:18292307), (PMID:18604195), (PMID:21962509)
RGD PMID:18292307 PMID:18604195 PMID:19703396 PMID:21962509 NCBI chr 5:146,227,119...146,244,122 JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr20:48,865,329...48,964,769 JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:25049417) RGD PMID:25049417 NCBI chr10:1,410,636...1,548,573 JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in ISO
IEA
(PMID:28546213)
GO_REF:0000107
RGD
Ensembl
PMID:28546213 GO_REF:0000107 NCBI chr 4:57,095,205...57,494,501 JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:25049417) RGD PMID:25049417 NCBI chr19:34,984,244...35,042,423 JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396) RGD PMID:19703396 NCBI chr 5:123,201,723...123,306,582 JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO
GO_REF:0000024
(PMID:22055188)
UniProt
RGD
PMID:22055188 GO_REF:0000024 NCBI chr 5:142,661,193...142,670,051 JBrowse link
miRNA-mediated gene silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,722,111...138,757,118 JBrowse link
G Ago2 argonaute RISC catalytic component 2 involved_in ISO
ISS
IEA
(PMID:15260970), (PMID:17524464), (PMID:18771919)
(PMID:16357216)
GO_REF:0000024
GO_REF:0000104
RGD
UniProt
PMID:15260970 PMID:16357216 PMID:17524464 PMID:18771919 GO_REF:0000024 GO_REF:0000104 NCBI chr 7:106,907,209...106,994,124 JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,632,367...138,714,230 JBrowse link
G Ago4 argonaute RISC component 4 NOT|involved_in ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:138,780,446...138,825,898 JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 involved_in ISO
IEA
ISS
(PMID:20065043)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20065043 GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,978,785...34,031,025 JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO (PMID:20065043) RGD PMID:20065043 NCBI chr16:51,775,416...51,794,581 JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 involved_in ISO (PMID:20065043) RGD PMID:20065043 NCBI chr10:42,281,614...42,294,740 JBrowse link
G Mir1 microRNA 1 involved_in ISO (PMID:23499676), (PMID:25802280) RGD PMID:23499676 PMID:25802280 NCBI chr18:1,887,537...1,887,623 JBrowse link
G Mir100 microRNA 100 involved_in ISO (PMID:22684006) RGD PMID:22684006 NCBI chr 8:41,901,225...41,901,304 JBrowse link
G Mir106a microRNA 106a involved_in ISO (PMID:22912877), (PMID:26265888), (PMID:27325313) RGD PMID:22912877 PMID:26265888 PMID:27325313 NCBI chr  X:132,422,584...132,422,661 JBrowse link
G Mir106b microRNA 106b involved_in ISO (PMID:27325313) RGD PMID:27325313 NCBI chr12:17,043,344...17,043,425 JBrowse link
G Mir125a microRNA 125a involved_in ISO (PMID:30670152) RGD PMID:30670152 NCBI chr 1:58,677,626...58,677,710 JBrowse link
G Mir125b1 microRNA 125b-1 involved_in ISO (PMID:28214897) RGD PMID:28214897 NCBI chr 8:50,850,036...50,850,122 JBrowse link
G Mir125b2 microRNA 125b-2 involved_in ISO (PMID:28214897) RGD PMID:28214897 NCBI chr11:29,732,572...29,732,659 JBrowse link
G Mir128-1 microRNA 128-1 involved_in ISO (PMID:33058756) RGD PMID:33058756 NCBI chr13:39,699,449...39,699,530 JBrowse link
G Mir128-2 microRNA 128-2 involved_in ISO (PMID:33058756) RGD PMID:33058756 NCBI chr 8:112,085,467...112,085,550 JBrowse link
G Mir130a microRNA 130a involved_in ISO (PMID:30741461) RGD PMID:30741461 NCBI chr 3:69,822,542...69,822,629 JBrowse link
G Mir130b microRNA 130b involved_in ISO (PMID:24040078) RGD PMID:24040078 NCBI chr11:83,880,163...83,880,244 JBrowse link
G Mir133a1 microRNA 133a-1 involved_in ISO (PMID:32205184) RGD PMID:32205184 NCBI chr18:1,885,082...1,885,168 JBrowse link
G Mir135b microRNA 135b involved_in ISO (PMID:27793001) RGD PMID:27793001 NCBI chr13:43,638,857...43,638,953 JBrowse link
G Mir137 microRNA 137 involved_in ISO (PMID:23275153) RGD PMID:23275153 NCBI chr 2:206,480,881...206,480,982 JBrowse link
G Mir140 microRNA 140 involved_in ISO (PMID:24928442) RGD PMID:24928442 NCBI chr19:52,375,293...52,375,391 JBrowse link
G Mir142 microRNA 142 involved_in ISO (PMID:24558198), (PMID:26572508), (PMID:31168355) RGD PMID:24558198 PMID:26572508 PMID:31168355 NCBI chr10:72,557,864...72,557,950 JBrowse link
G Mir145 microRNA 145 involved_in ISO (PMID:25323858), (PMID:25704091), (PMID:29883722) RGD PMID:25323858 PMID:25704091 PMID:29883722 NCBI chr18:57,369,983...57,370,070 JBrowse link
G Mir146a microRNA 146a involved_in ISO (PMID:30779466) RGD PMID:30779466 NCBI chr10:28,349,996...28,350,090 JBrowse link
G Mir151 microRNA 151 involved_in ISO (PMID:20305651) RGD PMID:20305651 NCBI chr 7:105,172,377...105,172,473 JBrowse link
G Mir181a2 microRNA 181a-2 involved_in ISO (PMID:22714950), (PMID:25535255) RGD PMID:22714950 PMID:25535255 NCBI chr 3:22,615,845...22,615,961 JBrowse link
G Mir181b1 microRNA 181b-1 involved_in ISO (PMID:25535255) RGD PMID:25535255 NCBI chr13:52,037,228...52,037,337 JBrowse link
G Mir181b2 microRNA 181b-2 involved_in ISO (PMID:25535255) RGD PMID:25535255 NCBI chr 3:22,616,948...22,617,035 JBrowse link
G Mir181c microRNA 181c involved_in ISO (PMID:25535255) RGD PMID:25535255 NCBI chr19:23,983,523...23,983,628 JBrowse link
G Mir181d microRNA 181d involved_in ISO (PMID:25535255) RGD PMID:25535255 NCBI chr19:23,983,706...23,983,788 JBrowse link
G Mir185 microRNA 185 involved_in ISO (PMID:23459944), (PMID:23951060), (PMID:26316588), (PMID:29053187) RGD PMID:23459944 PMID:23951060 PMID:26316588 PMID:29053187 NCBI chr11:82,664,716...82,664,795 JBrowse link
G Mir18a microRNA 18a involved_in ISO (PMID:28131417), (PMID:29988076), (PMID:34937502) RGD PMID:28131417 PMID:29988076 PMID:34937502 NCBI chr15:92,180,765...92,180,860 JBrowse link
G Mir190b microRNA 190b involved_in ISO (PMID:32039833) RGD PMID:32039833 NCBI chr 2:175,514,800...175,514,877 JBrowse link
G Mir191 microRNA 191 involved_in ISO (PMID:31874245) RGD PMID:31874245 NCBI chr 8:109,264,098...109,264,188 JBrowse link
G Mir192 microRNA 192 involved_in ISO (PMID:28483554) RGD PMID:28483554 NCBI chr 1:212,994,209...212,994,318 JBrowse link
G Mir193a microRNA 193a involved_in ISO (PMID:29725386) RGD PMID:29725386 NCBI chr10:64,672,343...64,672,454 JBrowse link
G Mir195 microRNA 195 involved_in ISO (PMID:31921616) RGD PMID:31921616 NCBI chr10:54,951,838...54,951,924 JBrowse link
G Mir196a1 microRNA 196a-1 acts_upstream_of_or_within ISO (PMID:15105502), (PMID:15361871) RGD PMID:15105502 PMID:15361871 NCBI chr10:81,231,006...81,231,085 JBrowse link
G Mir196a2 microRNA 196a-2 acts_upstream_of_or_within ISO (PMID:15105502), (PMID:15361871) RGD PMID:15105502 PMID:15361871 NCBI chr 7:134,110,400...134,110,509 JBrowse link
G Mir196b microRNA 196b acts_upstream_of_or_within ISO (PMID:15105502) RGD PMID:15105502 NCBI chr 4:81,330,487...81,330,571 JBrowse link
G Mir19a microRNA 19a involved_in ISO (PMID:27098600), (PMID:29130787) RGD PMID:27098600 PMID:29130787 NCBI chr15:92,180,912...92,180,993 JBrowse link
G Mir19b1 microRNA 19b-1 involved_in ISO (PMID:27098600) RGD PMID:27098600 NCBI chr15:92,181,214...92,181,300 JBrowse link
G Mir19b2 microRNA 19b-2 involved_in ISO (PMID:27098600) RGD PMID:27098600 NCBI chr  X:132,422,072...132,422,167 JBrowse link
G Mir1a-1 microRNA 1a-1 involved_in ISO (PMID:23499676), (PMID:25802280) RGD PMID:23499676 PMID:25802280 NCBI chr 3:167,487,117...167,487,201 JBrowse link
G Mir200b microRNA 200b involved_in ISO (PMID:22522429) RGD PMID:22522429 NCBI chr 5:171,931,495...171,931,589 JBrowse link
G Mir200c microRNA 200c involved_in ISO (PMID:22522429) RGD PMID:22522429 NCBI chr 4:157,523,679...157,523,747 JBrowse link
G Mir204 microRNA 204 involved_in ISO (PMID:20056717) RGD PMID:20056717 NCBI chr 1:220,316,931...220,317,040 JBrowse link
G Mir206 microRNA 206 involved_in ISO (PMID:23499676) RGD PMID:23499676 NCBI chr 9:23,094,249...23,094,332 JBrowse link
G Mir20a microRNA 20a involved_in ISO (PMID:29653364), (PMID:31368162) RGD PMID:29653364 PMID:31368162 NCBI chr15:92,181,084...92,181,168 JBrowse link
G Mir20b microRNA 20b involved_in ISO (PMID:32336590) RGD PMID:32336590 NCBI chr  X:132,422,211...132,422,282 JBrowse link
G Mir210 microRNA 210 involved_in ISO (PMID:29944867) RGD PMID:29944867 NCBI chr 1:196,326,343...196,326,452 JBrowse link
G Mir211 microRNA 211 involved_in ISO (PMID:21109473) RGD PMID:21109473 NCBI chr 1:117,777,539...117,777,644 JBrowse link
G Mir212 microRNA 212 involved_in ISO (PMID:26693054) RGD PMID:26693054 NCBI chr10:60,023,403...60,023,513 JBrowse link
G Mir214 microRNA 214 involved_in ISO (PMID:30703347) RGD PMID:30703347 NCBI chr13:74,588,374...74,588,481 JBrowse link
G Mir223 microRNA 223 involved_in ISO (PMID:23459944), (PMID:30807577), (PMID:34637033) RGD PMID:23459944 PMID:30807577 PMID:34637033 NCBI chr  X:61,141,887...61,141,996 JBrowse link
G Mir23a microRNA 23a involved_in ISO (PMID:26400397) RGD PMID:26400397 NCBI chr19:23,954,997...23,955,071 JBrowse link
G Mir24-2 microRNA 24-2 involved_in ISO (PMID:30378100) RGD PMID:30378100 NCBI chr19:23,954,683...23,954,790 JBrowse link
G Mir26b microRNA 26b involved_in ISO (PMID:25536365) RGD PMID:25536365 NCBI chr 9:75,976,596...75,976,680 JBrowse link
G Mir27a microRNA 27a involved_in ISO (PMID:25915942), (PMID:26400397) RGD PMID:25915942 PMID:26400397 NCBI chr19:23,954,831...23,954,917 JBrowse link
G Mir27b microRNA 27b involved_in ISO (PMID:30729664) RGD PMID:30729664 NCBI chr17:1,813,427...1,813,523 JBrowse link
G Mir29b1 microRNA 29b-1 involved_in ISO (PMID:26175849) RGD PMID:26175849 NCBI chr 4:60,618,334...60,618,414 JBrowse link
G Mir29b2 microRNA 29b-2 involved_in ISO (PMID:26175849) RGD PMID:26175849 NCBI chr13:106,570,371...106,570,451 JBrowse link
G Mir30b microRNA 30b involved_in ISO (PMID:23968872) RGD PMID:23968872 NCBI chr 7:102,021,543...102,021,629 JBrowse link
G Mir320a microRNA 320a involved_in ISO (PMID:32271402) RGD PMID:32271402 NCBI chr15:45,516,392...45,516,473 JBrowse link
G Mir322 microRNA 322 involved_in ISO (PMID:29130787) RGD PMID:29130787 NCBI chr  X:132,806,594...132,806,688 JBrowse link
G Mir326 microRNA 326 involved_in ISO (PMID:24279830) RGD PMID:24279830 NCBI chr 1:153,854,029...153,854,123 JBrowse link
G Mir337 microRNA 337 involved_in ISO (PMID:22723956) RGD PMID:22723956 NCBI chr 6:128,538,903...128,538,999 JBrowse link
G Mir340 microRNA 340 involved_in ISO (PMID:28413603) RGD PMID:28413603 NCBI chr10:34,393,568...34,393,665 JBrowse link
G Mir342 microRNA 342 involved_in ISO (PMID:23951060) RGD PMID:23951060 NCBI chr 6:127,565,269...127,565,367 JBrowse link
G Mir34b microRNA 34b involved_in ISO (PMID:22336710) RGD PMID:22336710 NCBI chr 8:60,306,609...60,306,692 JBrowse link
G Mir3582 microRNA 3582 involved_in ISO (PMID:32205184) RGD PMID:32205184 NCBI chr18:2,157,853...2,157,970 JBrowse link
G Mir365b microRNA 365b involved_in ISO (PMID:30910589) RGD PMID:30910589 NCBI chr10:64,686,255...64,686,340 JBrowse link
G Mir423 microRNA 423 involved_in ISO (PMID:32264887) RGD PMID:32264887 NCBI chr10:61,914,142...61,914,220 JBrowse link
G Mir486 microRNA 486 involved_in ISO (PMID:25857263) RGD PMID:25857263
G Mir497 microRNA 497 involved_in ISO (PMID:29969696) RGD PMID:29969696 NCBI chr10:55,450,171...55,450,239 JBrowse link
G Mir544 microRNA 544 involved_in ISO (PMID:27186677) RGD PMID:27186677 NCBI chr 6:128,743,530...128,743,607 JBrowse link
G Mir665 microRNA 665 involved_in ISO (PMID:34454184) RGD PMID:34454184 NCBI chr 6:128,539,440...128,539,533 JBrowse link
G Mir708 microRNA 708 involved_in ISO (PMID:26932538) RGD PMID:26932538 NCBI chr 1:150,599,876...150,599,963 JBrowse link
G Mir9-3 microRNA 9-3 involved_in ISO (PMID:26315535), (PMID:29584810) RGD PMID:26315535 PMID:29584810 NCBI chr 1:142,849,400...142,849,489 JBrowse link
G Mir93 microRNA 93 involved_in ISO (PMID:24606633), (PMID:28797104) RGD PMID:24606633 PMID:28797104 NCBI chr12:17,043,135...17,043,221 JBrowse link
G Mir96 microRNA 96 involved_in ISO (PMID:23459944) RGD PMID:23459944 NCBI chr 4:58,788,411...58,788,516 JBrowse link
G Mir98 microRNA 98 involved_in ISO (PMID:27860183), (PMID:28251559), (PMID:30195495) RGD PMID:27860183 PMID:28251559 PMID:30195495 NCBI chr  X:20,981,235...20,981,342 JBrowse link
G Mirlet7a1 microRNA let-7a-1 involved_in ISO (PMID:17671087), (PMID:30467960) RGD PMID:17671087 PMID:30467960 NCBI chr17:16,320,133...16,320,226 JBrowse link
G Mirlet7b microRNA let-7b involved_in ISO (PMID:29471394) RGD PMID:29471394 NCBI chr 7:116,804,186...116,804,270 JBrowse link
G Mirlet7c1 microRNA let-7c-1 involved_in ISO (PMID:19841744) RGD PMID:19841744 NCBI chr11:16,201,163...16,201,256 JBrowse link
G Mirlet7c2 microRNA let7c-2 involved_in ISO (PMID:17671087), (PMID:30467960) RGD PMID:17671087 PMID:30467960 NCBI chr 7:116,803,771...116,803,865 JBrowse link
G Mov10 Mov10 RNA helicase involved_in ISO (PMID:16289642) RGD PMID:16289642 NCBI chr 2:192,292,041...192,315,142 JBrowse link
mitochondrial DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Endog endonuclease G involved_in ISO (PMID:29719607) RGD PMID:29719607 NCBI chr 3:13,449,113...13,451,715 JBrowse link
mitochondrial mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde12 phosphodiesterase 12 involved_in IEA
ISO
GO_REF:0000107
(PMID:21245038), (PMID:21666256)
Ensembl
RGD
PMID:21245038 PMID:21666256 GO_REF:0000107 NCBI chr16:1,920,062...1,925,638 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IBA
(PMID:20691904)
GO_REF:0000033
RGD
GO_Central
PMID:20691904 GO_REF:0000033 NCBI chr14:102,877,553...102,908,696 JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO
ISS
(PMID:19864255)
GO_REF:0000024
RGD
UniProt
PMID:19864255 GO_REF:0000024 NCBI chr20:30,378,542...30,399,076 JBrowse link
mitochondrial mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:19864255)
UniProt
Ensembl
RGD
PMID:19864255 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076 JBrowse link
mitochondrial ncRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO
IEA
ISS
(PMID:19864255)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:19864255 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076 JBrowse link
mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qbp complement C1q binding protein involved_in ISO
IEA
(PMID:39019044)
GO_REF:0000107
RGD
Ensembl
PMID:39019044 GO_REF:0000107 NCBI chr10:56,198,534...56,203,185 JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:3857306|MGI:5438913 (PMID:21880015), (PMID:22045337)
Ensembl
RGD
PMID:21880015 PMID:22045337 GO_REF:0000107 NCBI chr 6:9,859,816...9,942,294 JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO (PMID:39019044) RGD PMID:39019044 NCBI chr 5:134,749,024...134,773,630 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18501193), (PMID:39019044) RGD PMID:18501193 PMID:39019044 NCBI chr14:102,877,553...102,908,696 JBrowse link
mitochondrial RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO
ISS
(PMID:19864255)
GO_REF:0000024
RGD
UniProt
PMID:19864255 GO_REF:0000024 NCBI chr20:30,378,542...30,399,076 JBrowse link
mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC118772.1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,632,367...138,714,230 JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,780,446...138,825,898 JBrowse link
G Cnot10 CCR4-NOT transcription complex, subunit 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:114,280,486...114,330,110 JBrowse link
G Cnot9 CCR4-NOT transcription complex subunit 9 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:76,084,269...76,109,111 JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:21070968) RGD PMID:21070968 NCBI chr18:36,750,732...36,787,067 JBrowse link
G Dis3l DIS3-like exosome 3'-5' exoribonuclease involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:64,803,925...64,840,306 JBrowse link
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:94,802,056...95,184,523 JBrowse link
G Dxo decapping exoribonuclease involved_in ISO
ISS
(PMID:29601584)
(PMID:23523372), (PMID:28283058)
GO_REF:0000024
RGD
UniProt
PMID:23523372 PMID:28283058 PMID:29601584 GO_REF:0000024 NCBI chr20:3,993,322...3,995,484 JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:11782436) RGD PMID:11782436 NCBI chr 5:64,369,495...64,374,711 JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:11782436) RGD PMID:11782436 NCBI chr 1:90,295,495...90,305,047 JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:11782436) RGD PMID:11782436 NCBI chr 2:121,344,154...121,355,110 JBrowse link
G Gas5 growth arrest specific 5 acts_upstream_of_or_within ISO (PMID:33006314) RGD PMID:33006314 NCBI chr13:73,303,611...73,306,932 JBrowse link
G Hspa1a heat shock protein family A (Hsp70) member 1A involved_in ISO
ISS
(PMID:10205060)
GO_REF:0000024
RGD
UniProt
PMID:10205060 GO_REF:0000024 NCBI chr20:3,875,411...3,877,866 JBrowse link
G Hspa1b heat shock protein family A (Hsp70) member 1B involved_in ISO
ISS
(PMID:10205060)
GO_REF:0000024
RGD
UniProt
PMID:10205060 GO_REF:0000024 NCBI chr20:3,859,756...3,863,800 JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:22844247)
Ensembl
RGD
PMID:22844247 GO_REF:0000107 NCBI chr 9:1,862,555...1,872,403 JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) RGD PMID:12515382 NCBI chr20:3,843,467...3,847,217 JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) RGD PMID:12515382 NCBI chr 4:85,951,073...85,954,289 JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) RGD PMID:12515382 NCBI chr19:29,098,254...29,112,858 JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in ISO (PMID:29262316) RGD PMID:29262316 NCBI chr10:59,640,915...59,697,291 JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (PMID:28637692) RGD PMID:28637692 NCBI chr15:27,476,659...27,491,134 JBrowse link
G Mir144 microRNA 144 involved_in ISO MGI:3619412|MGI:5562734 (PMID:30971389) RGD PMID:30971389 NCBI chr10:62,961,348...62,961,430 JBrowse link
G Mir451a microRNA 451a involved_in ISO MGI:2676829|MGI:5562734 (PMID:30971389) RGD PMID:30971389 NCBI chr10:62,961,520...62,961,591 JBrowse link
G Mirlet7b microRNA let-7b acts_upstream_of_or_within ISO MGI:2676795|MGI:3619050 (PMID:22844247) RGD PMID:22844247 NCBI chr 7:116,804,186...116,804,270 JBrowse link
G Mirlet7c1 microRNA let-7c-1 acts_upstream_of_or_within ISO MGI:2676794|MGI:3619050 (PMID:22844247) RGD PMID:22844247 NCBI chr11:16,201,163...16,201,256 JBrowse link
G Mirlet7c2 microRNA let7c-2 acts_upstream_of_or_within ISO MGI:2676794|MGI:2676795 (PMID:22844247) RGD PMID:22844247 NCBI chr 7:116,803,771...116,803,865 JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (PMID:20133598) RGD PMID:20133598 NCBI chr 1:78,635,668...78,637,128 JBrowse link
G Nudt12 nudix hydrolase 12 involved_in ISO (PMID:31101919) RGD PMID:31101919 NCBI chr 9:98,741,627...98,755,039 JBrowse link
G Nudt16 nudix hydrolase 16 involved_in ISO
IBA
(PMID:21070968), (PMID:21337011)
GO_REF:0000033
RGD
GO_Central
PMID:21070968 PMID:21337011 GO_REF:0000033 NCBI chr 8:105,739,927...105,741,982 JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 NOT|involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:10,636,174...10,638,090 JBrowse link
G Nudt16l2 nudix hydrolase 16 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:105,754,821...105,756,548 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:12721301), (PMID:16055741) RGD PMID:12721301 PMID:16055741 NCBI chr14:102,877,553...102,908,696 JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:30930054)
UniProt
GO_Central
Ensembl
RGD
PMID:30930054 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:65,691,429...65,705,257 JBrowse link
G Slfn14 schlafen family member 14 involved_in ISO (PMID:25996083) RGD PMID:25996083 NCBI chr10:68,076,326...68,087,794 JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in IBA
IEA
GO_REF:0000033
GO_REF:0000104
GO_Central
UniProt
GO_REF:0000033 GO_REF:0000104 NCBI chr 4:57,095,205...57,494,501 JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:27558897), (PMID:30559377), (PMID:30930054)
(PMID:29855337), (PMID:30065315), (PMID:30150673)
RGD PMID:27558897 PMID:29855337 PMID:30065315 PMID:30150673 PMID:30559377 More... NCBI chr 5:144,381,426...144,407,126 JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO (PMID:26000482) RGD PMID:26000482 NCBI chr 5:142,661,193...142,670,051 JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D acts_upstream_of_or_within ISO MGI:5588370 (PMID:24415781) RGD PMID:24415781 NCBI chr 1:2,313,110...2,348,820 JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:10751406), (PMID:11782475)
(PMID:10330172), (PMID:20221403)
UniProt
RGD
PMID:10330172 PMID:10751406 PMID:11782475 PMID:20221403 GO_REF:0000024 NCBI chr 1:92,796,628...92,799,108 JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 acts_upstream_of_or_within IDA PMID:10751406 MGI PMID:10751406 RGD:1580602 NCBI chr 6:98,930,705...98,935,748 JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (PMID:34611029)
(PMID:22367205)
RGD PMID:22367205 PMID:34611029 NCBI chr 6:16,242,622...16,246,662 JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 acts_upstream_of_or_within ISO (PMID:1370712) RGD PMID:1370712 NCBI chr 7:91,115,894...91,263,823 JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISS
ISO
GO_REF:0000024
(PMID:36859428)
(PMID:34048572), (PMID:37257451)
UniProt
RGD
PMID:34048572 PMID:36859428 PMID:37257451 GO_REF:0000024 NCBI chr10:45,844,411...45,865,853 JBrowse link
G Celf1 CUGBP, Elav-like family member 1 involved_in IDA PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr 3:97,380,407...97,455,253 JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like acts_upstream_of_or_within ISO (PMID:17452450) RGD PMID:17452450 NCBI chr14:13,714,475...13,806,481 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 IMP RGD PMID:26682942 RGD:329961560 NCBI chr12:2,640,936...2,684,787 JBrowse link
G Fto FTO, alpha-ketoglutarate dependent dioxygenase involved_in ISO
IEA
ISS
(PMID:28002401), (PMID:30197295)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:28002401 PMID:30197295 GO_REF:0000024 GO_REF:0000107 NCBI chr19:31,456,749...31,865,011 JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:30067974)
UniProt
Ensembl
RGD
PMID:30067974 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,590 JBrowse link
G Fxr2 FMR1 autosomal homolog 2 involved_in ISO (PMID:21658585) RGD PMID:21658585 NCBI chr10:54,350,577...54,370,964 JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:27157137) RGD PMID:27157137 NCBI chr 9:95,449,143...95,574,927 JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R IMP RGD PMID:15798208 RGD:9854643 NCBI chr 5:153,826,482...153,872,272 JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (PMID:24394384), (PMID:28965759) RGD PMID:24394384 PMID:28965759 NCBI chr 2:211,530,598...211,546,845 JBrowse link
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in ISO (PMID:29262316) RGD PMID:29262316 NCBI chr10:59,640,915...59,697,291 JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (PMID:24394384), (PMID:25456834), (PMID:25569111), (PMID:28637692), (PMID:28792938), (PMID:28965759) RGD PMID:24394384 PMID:25456834 PMID:25569111 PMID:28637692 PMID:28792938 More... NCBI chr15:27,476,659...27,491,134 JBrowse link
G Mir144 microRNA 144 involved_in ISO MGI:3619412|MGI:5562734 (PMID:30971389) RGD PMID:30971389 NCBI chr10:62,961,348...62,961,430 JBrowse link
G Mir451a microRNA 451a involved_in ISO MGI:2676829|MGI:5562734 (PMID:30971389) RGD PMID:30971389 NCBI chr10:62,961,520...62,961,591 JBrowse link
G Nanos1 nanos C2HC-type zinc finger 1 involved_in ISO (PMID:24736845) RGD PMID:24736845 NCBI chr 1:259,897,663...259,901,561 JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (PMID:24736845) RGD PMID:24736845 NCBI chr 1:78,635,668...78,637,128 JBrowse link
G Nanos3 nanos C2HC-type zinc finger 3 involved_in ISO (PMID:24736845) RGD PMID:24736845 NCBI chr19:23,978,465...23,988,933 JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO (PMID:25768905) RGD PMID:25768905 NCBI chr 5:148,120,712...148,238,468 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) RGD PMID:29104163 NCBI chr17:18,275,681...18,288,231 JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISO
IEA
ISS
(PMID:30930054)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:30930054 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:65,691,429...65,705,257 JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:29353861)
Ensembl
RGD
PMID:29353861 GO_REF:0000107 NCBI chr18:1,387,360...1,509,218 JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in ISO (PMID:29353861) RGD PMID:29353861 NCBI chr 6:45,407,823...45,502,773 JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein F1 involved_in ISO
IBA
(PMID:32492408)
(PMID:32943573)
GO_REF:0000033
RGD
GO_Central
PMID:32492408 PMID:32943573 GO_REF:0000033 NCBI chr 3:188,402,228...188,417,740 JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO
IBA
(PMID:27558897), (PMID:28106072), (PMID:30559377), (PMID:30930054), (PMID:32169943), (PMID:32492408)
(PMID:29855337), (PMID:30065315), (PMID:30150673), (PMID:31959747), (PMID:32943573)
GO_REF:0000033
RGD
GO_Central
PMID:27558897 PMID:28106072 PMID:29855337 PMID:30065315 PMID:30150673 More... GO_REF:0000033 NCBI chr 5:144,381,426...144,407,126 JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein F3 involved_in ISO
IBA
(PMID:28106072), (PMID:32492408)
(PMID:32943573)
GO_REF:0000033
RGD
GO_Central
PMID:28106072 PMID:32492408 PMID:32943573 GO_REF:0000033 NCBI chr 2:100,266,942...100,300,896 JBrowse link
mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 acts_upstream_of_or_within ISO (PMID:15480992) RGD PMID:15480992 NCBI chr 4:155,800,030...155,828,515 JBrowse link
G Axin2 axin 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:17072303)
Ensembl
RGD
PMID:17072303 GO_REF:0000107 NCBI chr10:94,393,379...94,426,579 JBrowse link
G Cirbp cold inducible RNA binding protein involved_in ISS
ISO
GO_REF:0000024
(PMID:11574538)
UniProt
RGD
PMID:11574538 GO_REF:0000024 NCBI chr 7:10,184,515...10,189,623 JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3589208 (PMID:22844247) RGD PMID:22844247 NCBI chr 6:123,627,529...123,692,278 JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:28,378,692...28,381,316 JBrowse link
G E2f1 E2F transcription factor 1 involved_in ISO
IEA
(PMID:15766563)
GO_REF:0000107
RGD
Ensembl
PMID:15766563 GO_REF:0000107 NCBI chr 3:163,524,739...163,535,563 JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:24335285), (PMID:32354837) RGD PMID:24335285 PMID:32354837 NCBI chr14:78,056,115...78,099,846 JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:24394384), (PMID:27609837)
(PMID:14976220), (PMID:21613615)
(PMID:21613615)
(PMID:19029303), (PMID:31358969)
UniProt
RGD
PMID:14976220 PMID:19029303 PMID:21613615 PMID:24394384 PMID:27609837 More... GO_REF:0000024 NCBI chr12:2,640,936...2,684,787 JBrowse link
G Fam76b family with sequence similarity 76, member B involved_in ISO (PMID:38421448) RGD PMID:38421448 NCBI chr 8:18,971,357...18,993,442 JBrowse link
G Fus Fus RNA binding protein acts_upstream_of_or_within ISO (PMID:27378374) RGD PMID:27378374 NCBI chr 1:182,576,479...182,590,417 JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO
IEA
ISS
(PMID:12358785)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:12358785 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:58,621,327...58,647,242 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:17174306) RGD PMID:17174306 NCBI chr13:92,609,791...92,618,580 JBrowse link
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon involved_in ISO MGI:3707541 (PMID:21822257) RGD PMID:21822257 NCBI chr13:45,264,404...45,290,737 JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:25940091), (PMID:28673543) RGD PMID:25940091 PMID:28673543 NCBI chr10:42,191,378...42,246,361 JBrowse link
G Larp1bl La ribonucleoprotein 1B like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:123,969,408...124,031,645 JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 acts_upstream_of_or_within ISO MGI:2179724 (PMID:11741878) RGD PMID:11741878 NCBI chr13:45,066,027...45,112,326 JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in IBA
ISO
GO_REF:0000033
(PMID:26742488)
GO_Central
RGD
PMID:26742488 GO_REF:0000033 NCBI chr10:87,628,807...87,646,485 JBrowse link
G Mettl14 methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit involved_in ISO (PMID:29290617) RGD PMID:29290617 NCBI chr 2:211,530,598...211,546,845 JBrowse link
G Mtor mechanistic target of rapamycin kinase IMP RGD PMID:21073857 RGD:10040969 NCBI chr 5:164,167,985...164,277,438 JBrowse link
G Noct nocturnin involved_in ISS
ISO
GO_REF:0000024
(PMID:22073225)
UniProt
RGD
PMID:22073225 GO_REF:0000024 NCBI chr 2:137,422,074...137,442,282 JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in ISO (PMID:30842217) RGD PMID:30842217 NCBI chr 6:119,405,103...119,446,861 JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in IMP
ISO
(PMID:32732889) RGD PMID:32732889 PMID:16855020 RGD:10045995 NCBI chr 1:50,387,716...50,501,568 JBrowse link
G Rbm10 RNA binding motif protein 10 IMP RGD PMID:19508861 RGD:151667451 NCBI chr  X:1,540,399...1,572,571 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO
IBA
(PMID:29104163)
GO_REF:0000033
RGD
GO_Central
PMID:29104163 GO_REF:0000033 NCBI chr17:18,275,681...18,288,231 JBrowse link
G Rbm46 RNA binding motif protein 46 acts_upstream_of_or_within ISO (PMID:25397698) RGD PMID:25397698 NCBI chr 2:168,198,324...168,242,011 JBrowse link
G Secisbp2 SECIS binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:27956496)
Ensembl
RGD
PMID:27956496 GO_REF:0000107 NCBI chr17:13,538,513...13,569,573 JBrowse link
G Slc11a1 solute carrier family 11 member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857755 (PMID:9009318)
Ensembl
RGD
PMID:9009318 GO_REF:0000107 NCBI chr 9:75,957,193...75,968,115 JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (PMID:21822258) RGD PMID:21822258 NCBI chr10:73,335,519...73,342,549 JBrowse link
G Taf15 TATA-box binding protein associated factor 15 acts_upstream_of_or_within ISO (PMID:27378374) RGD PMID:27378374 NCBI chr10:68,770,408...68,802,458 JBrowse link
G Tent5a terminal nucleotidyltransferase 5A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:95,102,349...95,109,100 JBrowse link
G Tent5b terminal nucleotidyltransferase 5B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:145,695,358...145,702,668 JBrowse link
G Tent5c terminal nucleotidyltransferase 5C involved_in ISO
IBA
IEA
ISS
(PMID:28931820)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:28931820 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:190,541,668...190,563,902 JBrowse link
G Tent5d terminal nucleotidyltransferase 5D involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:72,901,287...72,974,562 JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISO
ISS
(PMID:18794151)
GO_REF:0000024
RGD
UniProt
PMID:18794151 GO_REF:0000024 NCBI chr 5:143,729,821...143,772,105 JBrowse link
G Traf2 Tnf receptor-associated factor 2 involved_in ISO (PMID:21822258) RGD PMID:21822258 NCBI chr 3:28,740,098...28,764,752 JBrowse link
G Traf3ip2 Traf3 interacting protein 2 involved_in ISO (PMID:17785852), (PMID:21822258) RGD PMID:17785852 PMID:21822258 NCBI chr20:43,011,405...43,054,654 JBrowse link
G Traf5 TNF receptor-associated factor 5 involved_in ISO (PMID:21822258) RGD PMID:21822258 NCBI chr13:103,569,944...103,618,747 JBrowse link
G Vegfa vascular endothelial growth factor A IDA RGD PMID:12881220 RGD:1580563 NCBI chr 9:22,452,854...22,468,194 JBrowse link
G Vip vasoactive intestinal peptide involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 1:44,470,232...44,478,561 JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:31358969)
UniProt
RGD
PMID:31358969 GO_REF:0000024 NCBI chr 5:138,167,444...138,188,155 JBrowse link
G Ybx2 Y box binding protein 2 acts_upstream_of_or_within ISO MGI:3576937 (PMID:17035640) RGD PMID:17035640 NCBI chr10:54,659,719...54,665,371 JBrowse link
G Zar1 zygote arrest 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:36264786)
UniProt
RGD
PMID:36264786 GO_REF:0000024 NCBI chr14:35,193,446...35,197,382 JBrowse link
G Zc3h14 zinc finger CCCH type containing 14 involved_in ISS
ISO
GO_REF:0000024
(PMID:27563065)
UniProt
RGD
PMID:27563065 GO_REF:0000024 NCBI chr 6:118,006,420...118,044,480 JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl16 methyltransferase 16, RNA N6-adenosine involved_in ISO (PMID:28525753) RGD PMID:28525753 NCBI chr10:59,640,915...59,697,291 JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:31868295)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:31868295 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:50,387,716...50,501,568 JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISO (PMID:21606497) RGD PMID:21606497 NCBI chr 1:92,796,628...92,799,108 JBrowse link
negative regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha acts_upstream_of_or_within
involved_in
ISO (PMID:15572351)
MGI:2179456 (PMID:10601318), (PMID:14663139)
(PMID:11371636)
RGD PMID:10601318 PMID:11371636 PMID:14663139 PMID:15572351 NCBI chr 5:159,540,715...159,553,639 JBrowse link
G Dffb DNA fragmentation factor subunit beta involved_in ISO
IEA
(PMID:11371636)
GO_REF:0000107
RGD
Ensembl
PMID:11371636 GO_REF:0000107 NCBI chr 5:169,804,873...169,817,157 JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 IMP RGD PMID:27184051 RGD:13781945 NCBI chr 5:159,910,242...159,928,201 JBrowse link
G Pam16 presequence translocase associated motor 16 IDA RGD PMID:24069394 RGD:13462066 NCBI chr10:10,942,534...10,950,654 JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) RGD PMID:32354837 NCBI chr14:78,056,115...78,099,846 JBrowse link
negative regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rgn regucalcin IDA RGD PMID:2001740 RGD:9590215 NCBI chr  X:1,619,030...1,634,456 JBrowse link
negative regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qki QKI, KH domain containing RNA binding involved_in ISS
ISO
GO_REF:0000024
(PMID:31792053)
UniProt
RGD
PMID:31792053 GO_REF:0000024 NCBI chr 1:50,387,716...50,501,568 JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:23200856), (PMID:31792053)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:23200856 PMID:31792053 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:26,115,150...26,167,465 JBrowse link
negative regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1916394|MGI:3857306|MGI:5438913 (PMID:21880015), (PMID:22045337)
Ensembl
RGD
PMID:21880015 PMID:22045337 GO_REF:0000107 NCBI chr 6:9,859,816...9,942,294 JBrowse link
G Slirp SRA stem-loop interacting RNA binding protein acts_upstream_of_or_within ISO MGI:1919666 (PMID:22045337) RGD PMID:22045337 NCBI chr 6:112,819,684...112,828,715 JBrowse link
negative regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fxr1 FMR1 autosomal homolog 1 involved_in IEA
ISO
GO_REF:0000107
(PMID:25225333)
Ensembl
RGD
PMID:25225333 GO_REF:0000107 NCBI chr 2:116,884,167...116,937,590 JBrowse link
G Pkp1 plakophilin 1 involved_in ISO (PMID:25225333) RGD PMID:25225333 NCBI chr13:47,309,607...47,357,432 JBrowse link
G Pkp3 plakophilin 3 involved_in ISO (PMID:25225333) RGD PMID:25225333 NCBI chr 1:196,187,914...196,198,843 JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csde1 cold shock domain containing E1 involved_in ISO
IEA
(PMID:11051545)
GO_REF:0000107
RGD
Ensembl
PMID:11051545 GO_REF:0000107 NCBI chr 2:190,546,015...190,582,787 JBrowse link
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:19029303) RGD PMID:19029303 NCBI chr13:65,602,322...65,639,098 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr14:9,918,630...9,938,072 JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO
IEA
(PMID:19029303)
GO_REF:0000107
RGD
Ensembl
PMID:19029303 GO_REF:0000107 NCBI chr13:92,609,791...92,618,580 JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 involved_in ISO (PMID:19029303) RGD PMID:19029303 NCBI chr10:80,908,300...80,951,097 JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr 7:67,777,438...67,789,731 JBrowse link
G Paip1 poly(A) binding protein interacting protein 1 involved_in ISO (PMID:11051545) RGD PMID:11051545 NCBI chr 2:53,255,916...53,282,965 JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in ISO
IEA
(PMID:11051545), (PMID:19029303)
GO_REF:0000107
RGD
Ensembl
PMID:11051545 PMID:19029303 GO_REF:0000107 NCBI chr 8:98,282,358...98,315,412 JBrowse link
G Ybx1 Y box binding protein 1 involved_in ISO (PMID:19029303) RGD PMID:19029303 NCBI chr 5:138,167,444...138,188,155 JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor involved_in ISO (PMID:12881431) RGD PMID:12881431 NCBI chr 1:229,736,037...229,823,499 JBrowse link
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in ISO
IEA
(PMID:12881431)
GO_REF:0000107
RGD
Ensembl
PMID:12881431 GO_REF:0000107 NCBI chr 4:155,800,030...155,828,515 JBrowse link
G Dhx34 DExH-box helicase 34 involved_in ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 1:76,880,867...76,905,148 JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B involved_in ISO (PMID:12881431) RGD PMID:12881431 NCBI chr10:36,358,004...36,363,898 JBrowse link
G Nbas NBAS subunit of NRZ tethering complex involved_in ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 6:36,048,357...36,353,206 JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISO
ISS
(PMID:18447585)
GO_REF:0000024
RGD
UniProt
PMID:18447585 GO_REF:0000024 NCBI chr 7:67,777,438...67,789,731 JBrowse link
G Secisbp2 SECIS binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4433050 (PMID:24274065)
Ensembl
RGD
PMID:24274065 GO_REF:0000107 NCBI chr17:13,538,513...13,569,573 JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein involved_in ISO (PMID:12881431) RGD PMID:12881431 NCBI chr 8:98,282,358...98,315,412 JBrowse link
G Upf3a UPF3A, regulator of nonsense mediated mRNA decay involved_in ISO MGI:107995|MGI:1915384 (PMID:27040500) RGD PMID:27040500 NCBI chr16:75,757,442...75,768,478 JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) RGD PMID:30026317 NCBI chr 1:33,765,949...33,799,405 JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) RGD PMID:30026317 NCBI chr19:34,984,244...35,042,423 JBrowse link
G Tob1 transducer of ErbB-2.1 involved_in ISO
IEA
ISS
(PMID:18377426)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:18377426 GO_REF:0000024 GO_REF:0000107 NCBI chr10:79,163,093...79,165,131 JBrowse link
negative regulation of RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:119,405,103...119,446,861 JBrowse link
nonfunctional rRNA decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pelo pelota mRNA surveillance and ribosome rescue factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:48,530,902...48,532,670 JBrowse link
nuclear histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:9154801) RGD PMID:9154801 NCBI chr 3:54,616,616...54,626,203 JBrowse link
nuclear mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease involved_in ISS
ISO
GO_REF:0000024
(PMID:23523372)
UniProt
RGD
PMID:23523372 GO_REF:0000024 NCBI chr20:3,993,322...3,995,484 JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17545563), (PMID:20699273) RGD PMID:17545563 PMID:20699273 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Exosc4 exosome component 4 involved_in ISO
IBA
(PMID:17545563)
GO_REF:0000033
RGD
GO_Central
PMID:17545563 GO_REF:0000033 NCBI chr 7:109,928,491...109,931,233 JBrowse link
G Exosc5 exosome component 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:90,295,495...90,305,047 JBrowse link
G Exosc6 exosome component 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:39,022,171...39,023,585 JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943 JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009 JBrowse link
G Exosc9 exosome component 9 involved_in ISO
IBA
(PMID:17545563)
GO_REF:0000033
RGD
GO_Central
PMID:17545563 GO_REF:0000033 NCBI chr 2:121,344,154...121,355,110 JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 8:96,527,871...96,637,385 JBrowse link
nuclear mRNA surveillance of mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:82,231,922...82,258,299 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
nuclear polyadenylation-dependent antisense transcript catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
nuclear polyadenylation-dependent CUT catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16934922) RGD PMID:16934922 NCBI chr14:102,877,553...102,908,696 JBrowse link
nuclear polyadenylation-dependent rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in ISO
IBA
(PMID:16455498)
GO_REF:0000033
RGD
GO_Central
PMID:16455498 GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Exosc2 exosome component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:14,962,930...14,973,645 JBrowse link
G Exosc3 exosome component 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:64,369,495...64,374,711 JBrowse link
G Exosc7 exosome component 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:122,773,607...122,798,943 JBrowse link
G Exosc8 exosome component 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:138,930,405...138,937,009 JBrowse link
G Exosc9 exosome component 9 involved_in ISO
IBA
(PMID:16455498)
GO_REF:0000033
RGD
GO_Central
PMID:16455498 GO_REF:0000033 NCBI chr 2:121,344,154...121,355,110 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
nuclear polyadenylation-dependent snoRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
nuclear polyadenylation-dependent snRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Zcchc7 zinc finger CCHC-type containing 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:58,992,558...59,173,308 JBrowse link
nuclear RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wdr82 WD repeat domain 82 involved_in ISO (PMID:33913806)
(PMID:33767452)
RGD PMID:33767452 PMID:33913806 NCBI chr 8:106,814,569...106,834,535 JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 involved_in ISO (PMID:33913806)
(PMID:33767452)
RGD PMID:33767452 PMID:33913806 NCBI chr 1:77,106,309...77,143,827 JBrowse link
nuclear-transcribed mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:138,722,111...138,757,118 JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:23788676) RGD PMID:23788676 NCBI chr10:91,723,508...91,732,210 JBrowse link
G Dhx34 DExH-box helicase 34 involved_in ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 1:76,880,867...76,905,148 JBrowse link
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 involved_in ISO (PMID:23756462) RGD PMID:23756462 NCBI chr 9:94,802,056...95,184,523 JBrowse link
G Dxo decapping exoribonuclease involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:3,993,322...3,995,484 JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Exosc2 exosome component 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:14,962,930...14,973,645 JBrowse link
G Exosc3 exosome component 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:64,369,495...64,374,711 JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 7:109,928,491...109,931,233 JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:17545563) RGD PMID:17545563 NCBI chr 2:121,344,154...121,355,110 JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr16:18,755,481...18,761,106 JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:9,507,373...9,509,787 JBrowse link
G Mrto4 MRT4 homolog, ribosome maturation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:151,601,780...151,608,533 JBrowse link
G Nbas NBAS subunit of NRZ tethering complex involved_in ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 6:36,048,357...36,353,206 JBrowse link
G Nbdy negative regulator of P-body association involved_in ISO (PMID:27918561) RGD PMID:27918561
G Polr2g RNA polymerase II subunit G involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:205,689,160...205,692,537 JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IMP RGD PMID:15039777 RGD:10045958 NCBI chr 7:9,842,574...9,852,332 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:25026078)
(PMID:20639877)
RGD PMID:20639877 PMID:25026078 NCBI chr13:73,174,075...73,245,762 JBrowse link
G Skic3 SKI3 subunit of superkiller complex involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:7,363,417...7,526,351 JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:20123736)
UniProt
RGD
PMID:20123736 GO_REF:0000024 NCBI chr 5:143,729,821...143,772,105 JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:23828042) RGD PMID:23828042 NCBI chr16:19,076,594...19,097,365 JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO
IBA
(PMID:17545563)
GO_REF:0000033
RGD
GO_Central
PMID:17545563 GO_REF:0000033 NCBI chr 8:96,527,871...96,637,385 JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:134,436,916...134,509,308 JBrowse link
nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Skic2 SKI2 subunit of superkiller complex involved_in ISO
IBA
(PMID:32006463), (PMID:35120588)
GO_REF:0000033
RGD
GO_Central
PMID:32006463 PMID:35120588 GO_REF:0000033 NCBI chr20:3,982,494...3,993,261 JBrowse link
G Skic3 SKI3 subunit of superkiller complex involved_in ISO (PMID:32006463), (PMID:35120588) RGD PMID:32006463 PMID:35120588 NCBI chr 2:7,363,417...7,526,351 JBrowse link
G Skic8 SKI8 subunit of superkiller complex involved_in ISO
ISS
IEA
(PMID:32006463), (PMID:35120588)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:32006463 PMID:35120588 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:63,999,669...64,016,959 JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:9,255,190...9,346,574 JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like acts_upstream_of_or_within ISO (PMID:17452450) RGD PMID:17452450 NCBI chr14:13,714,475...13,806,481 JBrowse link
G Pabpn1l PABPN1 like involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:6509577 (PMID:32558204)
GO_Central
RGD
PMID:32558204 GO_REF:0000033 NCBI chr19:50,669,965...50,673,409 JBrowse link
G Pde12 phosphodiesterase 12 involved_in ISO
IBA
IEA
(PMID:21245038)
GO_REF:0000033
GO_REF:0000107
RGD
GO_Central
Ensembl
PMID:21245038 GO_REF:0000033 GO_REF:0000107 NCBI chr16:1,920,062...1,925,638 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO
IBA
(PMID:26000482)
GO_REF:0000033
RGD
GO_Central
PMID:26000482 GO_REF:0000033 NCBI chr13:73,174,075...73,245,762 JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:21,121,531...21,186,711 JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of_or_within
ISO (PMID:23644599)
(PMID:15814898)
RGD PMID:15814898 PMID:23644599 NCBI chr 1:92,796,628...92,799,108 JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 acts_upstream_of_or_within ISO (PMID:15814898) RGD PMID:15814898 NCBI chr 6:98,930,705...98,935,748 JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 acts_upstream_of_or_within ISO (PMID:15814898) RGD PMID:15814898 NCBI chr 6:16,242,622...16,246,662 JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 zinc finger protein 36 involved_in ISO
ISS
(PMID:11279239)
GO_REF:0000024
RGD
UniProt
PMID:11279239 GO_REF:0000024 NCBI chr 1:92,796,628...92,799,108 JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in IDA PMID:11279239 UniProt PMID:11279239 RGD:11344953 NCBI chr 6:98,930,705...98,935,748 JBrowse link
nuclear-transcribed mRNA catabolic process, no-go decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex, subunit 6 involved_in ISO
IEA
ISS
(PMID:15314026)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:15314026 GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,978,785...34,031,025 JBrowse link
G Csde1 cold shock domain containing E1 involved_in ISO
IEA
(PMID:15314026)
GO_REF:0000107
RGD
Ensembl
PMID:15314026 GO_REF:0000107 NCBI chr 2:190,546,015...190,582,787 JBrowse link
G Gtpbp2 GTP binding protein 2 acts_upstream_of_or_within ISO (PMID:25061210) RGD PMID:25061210 NCBI chr 9:14,813,964...14,823,419 JBrowse link
G Hbs1l HBS1-like translational GTPase involved_in ISO
ISS
(PMID:23667253), (PMID:27863242)
GO_REF:0000024
RGD
UniProt
PMID:23667253 PMID:27863242 GO_REF:0000024 NCBI chr 1:16,092,529...16,170,082 JBrowse link
G Pelo pelota mRNA surveillance and ribosome rescue factor involved_in ISO
IBA
ISS
(PMID:23667253), (PMID:27543824), (PMID:27863242)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:23667253 PMID:27543824 PMID:27863242 GO_REF:0000024 GO_REF:0000033 NCBI chr 2:48,530,902...48,532,670 JBrowse link
G Tesk1 testis associated actin remodelling kinase 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:30115939)
UniProt
RGD
PMID:30115939 GO_REF:0000024 NCBI chr 5:62,487,763...62,493,492 JBrowse link
nuclear-transcribed mRNA catabolic process, non-stop decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pelo pelota mRNA surveillance and ribosome rescue factor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:48,530,902...48,532,670 JBrowse link
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07037800.1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043
G Casc3 CASC3 exon junction complex subunit involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:83,769,014...83,788,966 JBrowse link
G Ctif cap binding complex dependent translation initiation factor involved_in ISO (PMID:19648179) RGD PMID:19648179 NCBI chr18:69,056,151...69,327,454 JBrowse link
G Dcp1a decapping mRNA 1A involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr16:5,663,437...5,708,623 JBrowse link
G Dcp1b decapping mRNA 1B involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:152,358,267...152,395,747 JBrowse link
G Dcp2 decapping mRNA 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:36,750,732...36,787,067 JBrowse link
G Eif3e eukaryotic translation initiation factor 3 subunit E involved_in ISS
ISO
GO_REF:0000024
(PMID:17468741)
UniProt
RGD
PMID:17468741 GO_REF:0000024 NCBI chr 7:74,339,848...74,372,483 JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:16209946) RGD PMID:16209946 NCBI chr10:105,047,567...105,057,561 JBrowse link
G Etf1 eukaryotic translation termination factor 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr18:26,502,413...26,530,753 JBrowse link
G Exosc10 exosome component 10 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in ISO
IEA
UniProtKB:Q96A72 (PMID:16209946), (PMID:23917022)
GO_REF:0000107
RGD
Ensembl
PMID:16209946 PMID:23917022 GO_REF:0000107 NCBI chr 5:122,639,268...122,646,650 JBrowse link
G Magohb mago homolog B, exon junction complex subunit involved_in ISO UniProtKB:P61326 (PMID:23917022) RGD PMID:23917022 NCBI chr 4:165,034,131...165,041,977 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO
IBA
ISS
(PMID:11551508), (PMID:17873884), (PMID:18369367)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:11551508 PMID:17873884 PMID:18369367 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:65,211,632...65,244,532 JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO
IEA
(PMID:11551508), (PMID:17873884), (PMID:18369367)
GO_REF:0000043
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:11551508 PMID:17873884 PMID:18369367 GO_REF:0000043 GO_REF:0000107 NCBI chr11:68,821,026...68,829,863 JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 7:67,777,438...67,789,731 JBrowse link
G Pnrc1 proline-rich nuclear receptor coactivator 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:47,647,070...47,657,832 JBrowse link
G Pnrc2 proline-rich nuclear receptor coactivator 2 involved_in ISO
IBA
ISS
(PMID:19150429)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:19150429 GO_REF:0000024 GO_REF:0000033 NCBI chr 5:148,103,966...148,106,950 JBrowse link
G Pym1 PYM homolog 1, exon junction complex associated factor involved_in ISO (PMID:19410547) RGD PMID:19410547 NCBI chr 7:1,761,556...1,785,318 JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:16209946) RGD PMID:16209946 NCBI chr 2:186,854,018...186,856,802 JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in ISO
IEA
(PMID:11546874), (PMID:16209946)
GO_REF:0000043
RGD
UniProt
PMID:11546874 PMID:16209946 GO_REF:0000043 NCBI chr10:13,445,516...13,455,858 JBrowse link
G Rnps1-ps5 RNA binding protein with serine rich domain 1, pseudogene 5 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:24,630,410...24,632,144 JBrowse link
G Smg1 SMG1, nonsense mediated mRNA decay associated PI3K related kinase involved_in ISO
IBA
(PMID:11544179)
GO_REF:0000033
RGD
GO_Central
PMID:11544179 GO_REF:0000033 NCBI chr 1:181,876,134...181,977,894 JBrowse link
G Smg5 SMG5 nonsense mediated mRNA decay factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:173,804,987...173,832,102 JBrowse link
G Smg5l1 Smg5 nonsense mediated mRNA decay factor like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:75,917,527...76,051,832 JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor involved_in ISO
IBA
(PMID:18974281), (PMID:19060897), (PMID:20930030)
GO_REF:0000033
RGD
GO_Central
PMID:18974281 PMID:19060897 PMID:20930030 GO_REF:0000033 NCBI chr10:59,786,258...60,014,395 JBrowse link
G Smg7 SMG7 nonsense mediated mRNA decay factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:64,986,145...65,050,698 JBrowse link
G Smg8 SMG8 nonsense mediated mRNA decay factor involved_in ISO
IBA
(PMID:19417104)
GO_REF:0000033
RGD
GO_Central
PMID:19417104 GO_REF:0000033 NCBI chr10:72,384,012...72,393,746 JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:19417104)
UniProt
GO_Central
Ensembl
RGD
PMID:19417104 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:79,988,540...80,011,262 JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:143,729,821...143,772,105 JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO
IBA
(PMID:17468741), (PMID:18369367)
GO_REF:0000033
RGD
GO_Central
PMID:17468741 PMID:18369367 GO_REF:0000033 NCBI chr16:19,076,594...19,097,365 JBrowse link
G Upf2 UPF2, regulator of nonsense mediated mRNA decay involved_in ISO
IBA
(PMID:18369367), (PMID:19556969)
GO_REF:0000033
RGD
GO_Central
PMID:18369367 PMID:19556969 GO_REF:0000033 NCBI chr17:72,224,575...72,335,896 JBrowse link
G Upf3a UPF3A, regulator of nonsense mediated mRNA decay NOT|involved_in ISO (PMID:16601204) RGD PMID:16601204 NCBI chr16:75,757,442...75,768,478 JBrowse link
G Upf3b UPF3B, regulator of nonsense mediated mRNA decay involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:16601204), (PMID:18369367)
(PMID:23821644)
GO_REF:0000033
RGD
GO_Central
PMID:16601204 PMID:18369367 PMID:23821644 GO_REF:0000033 NCBI chr  X:116,335,308...116,353,332 JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot2 CCR4-NOT transcription complex, subunit 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:52,130,445...52,222,338 JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:74,471,284...74,487,527 JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 involved_in ISO
IEA
ISS
(PMID:20595389)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:20595389 GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,978,785...34,031,025 JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 acts_upstream_of_or_within
involved_in
ISO (PMID:18625844)
(PMID:21336257)
RGD PMID:18625844 PMID:21336257 NCBI chr16:51,775,416...51,794,581 JBrowse link
G Mlh1 mutL homolog 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857946 (PMID:11337385)
Ensembl
RGD
PMID:11337385 GO_REF:0000107 NCBI chr 8:120,074,871...120,112,109 JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 involved_in IEA
IBA
GO_REF:0000104
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000104 NCBI chr 7:729,146...747,744 JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:12,512,835...12,637,066 JBrowse link
G Parn poly(A)-specific ribonuclease acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:18337750)
GO_REF:0000033
RGD
GO_Central
PMID:18337750 GO_REF:0000033 NCBI chr10:1,410,636...1,548,573 JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 involved_in ISO
IBA
(PMID:27515512)
GO_REF:0000033
RGD
GO_Central
PMID:27515512 GO_REF:0000033 NCBI chr 1:47,843,224...47,861,675 JBrowse link
G Samd4a sterile alpha motif domain containing 4A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:22,616,200...22,831,872 JBrowse link
G Samd4b sterile alpha motif domain containing 4B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:83,689,413...83,728,652 JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:15814898)
(PMID:23644599)
Ensembl
RGD
PMID:15814898 PMID:23644599 GO_REF:0000107 NCBI chr 1:92,796,628...92,799,108 JBrowse link
piRNA-mediated gene silencing by mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO UniProtKB:Q9JMB7 (PMID:24787618) RGD PMID:24787618 NCBI chr16:51,775,416...51,794,581 JBrowse link
G Gtsf1 gametocyte specific factor 1 involved_in ISO (PMID:29437694) RGD PMID:29437694 NCBI chr 7:134,539,329...134,558,395 JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 involved_in ISO (PMID:24787618), (PMID:25582079) RGD PMID:24787618 PMID:25582079 NCBI chr12:27,949,743...27,970,645 JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 involved_in ISO (PMID:29437694) RGD PMID:29437694 NCBI chr15:45,431,402...45,498,034 JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 involved_in ISO (PMID:29437694) RGD PMID:29437694 NCBI chr 8:11,536,520...11,579,883 JBrowse link
polyadenylation-dependent ncRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4a terminal nucleotidyltransferase 4A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:33,765,949...33,799,405 JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO
IBA
(PMID:26950371)
GO_REF:0000033
RGD
GO_Central
PMID:26950371 GO_REF:0000033 NCBI chr19:34,984,244...35,042,423 JBrowse link
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 9:94,802,056...95,184,523 JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:28792939) RGD PMID:28792939 NCBI chr 5:123,201,723...123,306,582 JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (PMID:28792939) RGD PMID:28792939 NCBI chr17:4,849,287...4,903,542 JBrowse link
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid5a AT-rich interaction domain 5A involved_in ISO (PMID:32209697) RGD PMID:32209697 NCBI chr 9:38,534,612...38,549,467 JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO
ISS
(PMID:18218628)
GO_REF:0000024
RGD
UniProt
PMID:18218628 GO_REF:0000024 NCBI chr 5:125,056,848...125,200,543 JBrowse link
G Larp4b La ribonucleoprotein 4B involved_in ISO (PMID:26001795) RGD PMID:26001795 NCBI chr17:61,138,663...61,217,423 JBrowse link
G Qki QKI, KH domain containing RNA binding involved_in ISO (PMID:28188285) RGD PMID:28188285 NCBI chr 1:50,387,716...50,501,568 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24356969) RGD PMID:24356969 NCBI chr17:18,275,681...18,288,231 JBrowse link
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) RGD PMID:30026317 NCBI chr 1:33,765,949...33,799,405 JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) RGD PMID:30026317 NCBI chr19:34,984,244...35,042,423 JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator involved_in ISO (PMID:11350920) RGD PMID:11350920 NCBI chr 1:105,076,472...105,081,906 JBrowse link
G Endog endonuclease G IMP RGD PMID:16407272 RGD:9685355 NCBI chr 3:13,449,113...13,451,715 JBrowse link
G Gata5 GATA binding protein 5 IMP RGD PMID:25726415 RGD:155260369 NCBI chr 3:187,796,140...187,804,327 JBrowse link
G Hsf1 heat shock transcription factor 1 IMP RGD PMID:21192280 RGD:10403035 NCBI chr 7:110,076,710...110,103,665 JBrowse link
G Igfbp3 insulin-like growth factor binding protein 3 IMP RGD PMID:15125883 RGD:10402776 NCBI chr14:86,270,208...86,277,944 JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:28433754) RGD PMID:28433754 NCBI chr 4:5,889,999...5,894,575 JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 zinc finger protein 36 involved_in ISS
ISO
GO_REF:0000024
(PMID:16364915)
UniProt
RGD
PMID:16364915 GO_REF:0000024 NCBI chr 1:92,796,628...92,799,108 JBrowse link
positive regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase IMP RGD PMID:27895165 RGD:12879393 NCBI chr 8:62,724,939...62,829,040 JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:48,865,329...48,964,769 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20547861) RGD PMID:20547861 NCBI chr14:102,877,553...102,908,696 JBrowse link
G Pvt1 Pvt1 oncogene involved_in ISO (PMID:28258379) RGD PMID:28258379 NCBI chr 7:93,656,528...93,879,938 JBrowse link
G Xist X inactive specific transcript involved_in ISO (PMID:29053187) RGD PMID:29053187 NCBI chr  X:68,474,987...68,492,500 JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISO (PMID:24048733) RGD PMID:24048733 NCBI chr 5:142,661,193...142,670,051 JBrowse link
G Zswim8 zinc finger, SWIM-type containing 8 involved_in ISO (PMID:33184234), (PMID:33184237)
(PMID:33184237)
RGD PMID:33184234 PMID:33184237 NCBI chr15:3,573,780...3,589,501 JBrowse link
positive regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grsf1 G-rich RNA sequence binding factor 1 involved_in ISO (PMID:29967381) RGD PMID:29967381 NCBI chr14:19,412,944...19,429,364 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:19509288), (PMID:29967381) RGD PMID:19509288 PMID:29967381 NCBI chr14:102,877,553...102,908,696 JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:19509288), (PMID:19864255), (PMID:29967381)
Ensembl
UniProt
RGD
PMID:19509288 PMID:19864255 PMID:29967381 GO_REF:0000024 GO_REF:0000107 NCBI chr20:30,378,542...30,399,076 JBrowse link
positive regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (PMID:22977175) RGD PMID:22977175 NCBI chr19:9,255,190...9,346,574 JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO (PMID:23386060), (PMID:25038453) RGD PMID:23386060 PMID:25038453 NCBI chr16:51,775,416...51,794,581 JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 involved_in ISO (PMID:22977175) RGD PMID:22977175 NCBI chr10:42,281,614...42,294,740 JBrowse link
G Gtpbp1 GTP binding protein 1 involved_in IDA PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chr 7:111,248,254...111,272,705 JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R IMP RGD PMID:15798208 RGD:9854643 NCBI chr 5:153,826,482...153,872,272 JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISS
ISO
GO_REF:0000024
(PMID:16126846)
UniProt
RGD
PMID:16126846 GO_REF:0000024 NCBI chr 9:1,862,555...1,872,403 JBrowse link
G Mettl3 methyltransferase 3, N6-adenosine-methyltransferase complex catalytic subunit involved_in ISO (PMID:33020597) RGD PMID:33020597 NCBI chr15:27,476,659...27,491,134 JBrowse link
G Mov10 Mov10 RNA helicase involved_in ISO (PMID:24726324) RGD PMID:24726324 NCBI chr 2:192,292,041...192,315,142 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in IDA
ISO
(PMID:16410805) RGD PMID:16410805 PMID:737213 RGD:11554176 NCBI chr14:102,877,553...102,908,696 JBrowse link
G Prr5l proline rich 5 like involved_in ISO
IEA
ISS
(PMID:21964062)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21964062 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:108,458,107...108,628,552 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:25026077), (PMID:26000482) RGD PMID:25026077 PMID:26000482 NCBI chr13:73,174,075...73,245,762 JBrowse link
G Ttc5 tetratricopeptide repeat domain 5 involved_in ISO (PMID:31727855) RGD PMID:31727855 NCBI chr15:26,466,613...26,484,269 JBrowse link
G Upf1 UPF1, RNA helicase and ATPase involved_in ISO (PMID:24726324), (PMID:25225333) RGD PMID:24726324 PMID:25225333 NCBI chr16:19,076,594...19,097,365 JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A involved_in ISS
ISO
GO_REF:0000024
(PMID:19322177), (PMID:23185455)
(PMID:19909337)
UniProt
RGD
PMID:19322177 PMID:19909337 PMID:23185455 GO_REF:0000024 NCBI chr 5:142,661,193...142,670,051 JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 involved_in IDA
IEA
ISO
PMID:17185417
GO_REF:0000107
(PMID:21876179)
Ensembl
RGD
PMID:21876179 PMID:17185417 GO_REF:0000107, RGD:8553432 NCBI chr 4:67,012,129...67,062,428 JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
ISO
GO_REF:0000024
(PMID:15634918)
UniProt
RGD
PMID:15634918 GO_REF:0000024 NCBI chr 1:92,796,628...92,799,108 JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:19716330)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19716330 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:106,907,209...106,994,124 JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (PMID:21278420) RGD PMID:21278420 NCBI chr19:9,255,190...9,346,574 JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO (PMID:21278420)
(PMID:19716330)
RGD PMID:19716330 PMID:21278420 NCBI chr16:51,775,416...51,794,581 JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:234,749,138...234,931,219 JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:14731398) RGD PMID:14731398 NCBI chr 2:146,856,469...146,894,577 JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:19716330)
UniProt
RGD
PMID:19716330 GO_REF:0000024 NCBI chr 7:67,777,438...67,789,731 JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) RGD PMID:19716330 NCBI chr 7:112,252,351...112,469,829 JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) RGD PMID:21984185 NCBI chr10:102,908,958...102,979,543 JBrowse link
G Tob1 transducer of ErbB-2.1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:21336257)
UniProt
Ensembl
RGD
PMID:21336257 GO_REF:0000024 GO_REF:0000107 NCBI chr10:79,163,093...79,165,131 JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:21278420)
GO_REF:0000104
(PMID:12748283)
UniProt
RGD
PMID:12748283 PMID:21278420 GO_REF:0000024 GO_REF:0000104 NCBI chr 1:92,796,628...92,799,108 JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in IDA PMID:12748283 UniProt PMID:12748283 RGD:11344945 NCBI chr 6:98,930,705...98,935,748 JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in ISO (PMID:22367205) RGD PMID:22367205 NCBI chr 6:16,242,622...16,246,662 JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:19716330)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19716330 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:106,907,209...106,994,124 JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:18337750) RGD PMID:18337750 NCBI chr13:48,083,931...48,087,690 JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 involved_in ISO (PMID:21278420), (PMID:23644599) RGD PMID:21278420 PMID:23644599 NCBI chr19:9,255,190...9,346,574 JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 involved_in ISO (PMID:21278420)
(PMID:19716330)
RGD PMID:19716330 PMID:21278420 NCBI chr16:51,775,416...51,794,581 JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) RGD PMID:21336257 NCBI chr 1:234,749,138...234,931,219 JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) RGD PMID:32354837 NCBI chr14:78,056,115...78,099,846 JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:19716330)
UniProt
RGD
PMID:19716330 GO_REF:0000024 NCBI chr 7:67,777,438...67,789,731 JBrowse link
G Polr2g RNA polymerase II subunit G involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:205,689,160...205,692,537 JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:186,992,457...187,146,764 JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO
IBA
(PMID:19716330)
GO_REF:0000033
RGD
GO_Central
PMID:19716330 GO_REF:0000033 NCBI chr 7:112,252,351...112,469,829 JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO
IBA
(PMID:21984185)
GO_REF:0000033
RGD
GO_Central
PMID:21984185 GO_REF:0000033 NCBI chr10:102,908,958...102,979,543 JBrowse link
G Tob1 transducer of ErbB-2.1 involved_in ISO
IEA
ISS
(PMID:21336257)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:21336257 GO_REF:0000024 GO_REF:0000107 NCBI chr10:79,163,093...79,165,131 JBrowse link
G Zfp36 zinc finger protein 36 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:20595389), (PMID:21278420)
GO_REF:0000107
(PMID:10330172)
UniProt
RGD
Ensembl
PMID:10330172 PMID:20595389 PMID:21278420 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:92,796,628...92,799,108 JBrowse link
pre-mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zpr1 ZPR1 zinc finger involved_in ISO (PMID:11283611) RGD PMID:11283611 NCBI chr 8:46,564,898...46,574,719 JBrowse link
regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aifm1 apoptosis inducing factor, mitochondria associated 1 acts_upstream_of_or_within ISO MGI:1306796 (PMID:15703386) RGD PMID:15703386 NCBI chr  X:132,528,107...132,567,237 JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO MGI:1349414 (PMID:15703386) RGD PMID:15703386 NCBI chr 7:27,381,392...27,466,772 JBrowse link
G Cidea cell death-inducing DFFA-like effector a involved_in ISO (PMID:9564035) RGD PMID:9564035 NCBI chr18:63,164,817...63,190,384 JBrowse link
regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Caprin1 cell cycle associated protein 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:31439799)
UniProt
Ensembl
RGD
PMID:31439799 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:90,152,305...90,230,447 JBrowse link
regulation of mitochondrial mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastk Fas-activated serine/threonine kinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,624,697...11,628,769 JBrowse link
G Fastkd1 FAST kinase domains 1 involved_in ISO
IBA
(PMID:28335001)
GO_REF:0000033
RGD
GO_Central
PMID:28335001 GO_REF:0000033 NCBI chr 3:74,857,539...74,883,483 JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in IEA
IBA
GO_REF:0000002
GO_REF:0000033
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr 9:72,659,961...72,681,986 JBrowse link
G Fastkd3 FAST kinase domains 3 involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000002
(PMID:27789713)
UniProt
GO_Central
InterPro
RGD
PMID:27789713 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr 1:34,858,342...34,866,988 JBrowse link
G Fastkd5 FAST kinase domains 5 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:117,830,219...117,847,707 JBrowse link
G Pde12 phosphodiesterase 12 involved_in IEA
ISO
GO_REF:0000107
(PMID:21666256)
Ensembl
RGD
PMID:21666256 GO_REF:0000107 NCBI chr16:1,920,062...1,925,638 JBrowse link
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:28335001)
UniProt
GO_Central
RGD
PMID:28335001 GO_REF:0000024 GO_REF:0000033 NCBI chr14:81,481,977...81,490,781 JBrowse link
regulation of mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 IMP RGD PMID:26846850 RGD:11526737 NCBI chr 5:138,722,111...138,757,118 JBrowse link
G Ago2 argonaute RISC catalytic component 2 IMP RGD PMID:26846850 RGD:11526737 NCBI chr 7:106,907,209...106,994,124 JBrowse link
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISS
ISO
GO_REF:0000024
(PMID:29279410)
UniProt
RGD
PMID:29279410 GO_REF:0000024 NCBI chr10:45,844,411...45,865,853 JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISO
ISS
IEA
(PMID:19401441)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:19401441 GO_REF:0000024 GO_REF:0000107 NCBI chr15:24,144,595...24,146,785 JBrowse link
G Brf1 BRF1 general transcription factor IIIB subunit acts_upstream_of_or_within ISO (PMID:14976220) RGD PMID:14976220 NCBI chr 6:132,034,378...132,081,313 JBrowse link
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 IMP RGD PMID:18923037 RGD:13524564 NCBI chr 1:65,800,059...65,831,246 JBrowse link
G Calcr calcitonin receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:9002981)
Ensembl
RGD
PMID:9002981 GO_REF:0000107 NCBI chr 4:31,661,270...31,736,392 JBrowse link
G Carhsp1 calcium regulated heat stable protein 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:21078874)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:21078874 GO_REF:0000024 GO_REF:0000033 NCBI chr10:7,453,602...7,467,218 JBrowse link
G Csdc2 cold shock domain containing C2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:113,451,998...113,466,464 JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:28002401) RGD PMID:28002401 NCBI chr18:36,750,732...36,787,067 JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISS
ISO
GO_REF:0000024
(PMID:18279852)
UniProt
RGD
PMID:18279852 GO_REF:0000024 NCBI chr 2:146,856,469...146,894,577 JBrowse link
G Elavl4 ELAV like RNA binding protein 4 IMP RGD PMID:22736542 RGD:9586719 NCBI chr 5:125,056,848...125,200,543 JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(PMID:17417632)
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:17417632 GO_REF:0000024 GO_REF:0000033 NCBI chr  X:147,240,239...147,278,057 JBrowse link
G Fxr1 FMR1 autosomal homolog 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:116,884,167...116,937,590 JBrowse link
G Fxr2 FMR1 autosomal homolog 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:54,350,577...54,370,964 JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D acts_upstream_of_or_within ISO (PMID:14976220) RGD PMID:14976220 NCBI chr14:9,918,630...9,938,072 JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISS
ISO
GO_REF:0000024
(PMID:16126846)
UniProt
RGD
PMID:16126846 GO_REF:0000024 NCBI chr 9:1,862,555...1,872,403 JBrowse link
G Pabpc4 poly(A) binding protein, cytoplasmic 4 acts_upstream_of_or_within ISO (PMID:24469397) RGD PMID:24469397 NCBI chr 5:135,563,142...135,578,985 JBrowse link
G Pcbp4 poly(rC) binding protein 4 acts_upstream_of_or_within ISO (PMID:20817677) RGD PMID:20817677 NCBI chr 8:107,092,688...107,103,276 JBrowse link
G Pias4 protein inhibitor of activated STAT, 4 involved_in ISO (PMID:34048572) RGD PMID:34048572 NCBI chr 7:8,546,312...8,559,838 JBrowse link
G Pum1 pumilio RNA-binding family member 1 involved_in ISO
IBA
(PMID:26724866)
GO_REF:0000033
RGD
GO_Central
PMID:26724866 GO_REF:0000033 NCBI chr 5:148,120,712...148,238,468 JBrowse link
G Pum2 pumilio RNA-binding family member 2 involved_in ISO
IBA
(PMID:26724866)
GO_REF:0000033
RGD
GO_Central
PMID:26724866 GO_REF:0000033 NCBI chr 6:31,462,879...31,542,976 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:20977548) RGD PMID:20977548 NCBI chr17:18,275,681...18,288,231 JBrowse link
G Rbm33 RNA binding motif protein 33 involved_in ISO (PMID:37257451) RGD PMID:37257451 NCBI chr 4:6,980,807...7,088,334 JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:18172933) RGD PMID:18172933 NCBI chr13:73,174,075...73,245,762 JBrowse link
G Rnasel ribonuclease L acts_upstream_of_or_within ISO (PMID:22441668) RGD PMID:22441668 NCBI chr13:68,446,641...68,460,804 JBrowse link
G Samd4a sterile alpha motif domain containing 4A involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:22,616,200...22,831,872 JBrowse link
G Scgb1a1 secretoglobin family 1A member 1 acts_upstream_of_or_within ISO (PMID:15356574) RGD PMID:15356574 NCBI chr 1:215,406,138...215,409,686 JBrowse link
G Senp1 SUMO specific peptidase 1 involved_in ISO (PMID:34048572) RGD PMID:34048572 NCBI chr 7:131,042,237...131,105,826 JBrowse link
G Vim vimentin involved_in IEA
ISO
GO_REF:0000107
(PMID:21746880)
Ensembl
RGD
PMID:21746880 GO_REF:0000107 NCBI chr17:81,577,261...81,585,746 JBrowse link
G Ythdc1 YTH N6-methyladenosine RNA binding protein C1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr14:21,185,438...21,215,934 JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein F1 involved_in ISO (PMID:32492408)
(PMID:32943573)
RGD PMID:32492408 PMID:32943573 NCBI chr 3:188,402,228...188,417,740 JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein F2 involved_in ISO (PMID:24284625), (PMID:26046440), (PMID:32492408)
(PMID:32943573)
RGD PMID:24284625 PMID:26046440 PMID:32492408 PMID:32943573 NCBI chr 5:144,381,426...144,407,126 JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein F3 involved_in ISO (PMID:32194978), (PMID:32492408)
(PMID:32943573)
RGD PMID:32194978 PMID:32492408 PMID:32943573 NCBI chr 2:100,266,942...100,300,896 JBrowse link
G Zc3h14 zinc finger CCCH type containing 14 involved_in IEA
IBA
GO_REF:0000104
GO_REF:0000033
UniProt
GO_Central
GO_REF:0000033 GO_REF:0000104 NCBI chr 6:118,006,420...118,044,480 JBrowse link
G Zfp36 zinc finger protein 36 involved_in
acts_upstream_of_or_within
ISO
ISS
(PMID:11719186), (PMID:15187101), (PMID:15634918), (PMID:15687258), (PMID:20702587), (PMID:9703499)
(PMID:15634918), (PMID:17288565), (PMID:22701344)
(PMID:15467755)
GO_REF:0000024
RGD
UniProt
PMID:9703499 PMID:11719186 PMID:15187101 PMID:15467755 PMID:15634918 More... GO_REF:0000024 NCBI chr 1:92,796,628...92,799,108 JBrowse link
G Zfp36l1 zinc finger protein 36, C3H type-like 1 involved_in
acts_upstream_of_or_within
IDA
ISO
ISS
PMID:12748283
(PMID:20622884), (PMID:22701344), (PMID:24700863), (PMID:24733888)
(PMID:15467755)
(PMID:12198173), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:20702587), (PMID:24700863), (PMID:25014217), (PMID:25106868), (PMID:26542173)
GO_REF:0000024
PMID:11279239
RGD
UniProt
PMID:12198173 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 More... GO_REF:0000024, RGD:11344945, RGD:11344953 NCBI chr 6:98,930,705...98,935,748 JBrowse link
G Zfp36l2 zinc finger protein 36, C3H type-like 2 involved_in
acts_upstream_of_or_within
ISO (PMID:25106868)
(PMID:20622884), (PMID:22701344)
(PMID:15467755)
RGD PMID:15467755 PMID:20622884 PMID:22701344 PMID:25106868 NCBI chr 6:16,242,622...16,246,662 JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 involved_in ISO (PMID:12080348) RGD PMID:12080348 NCBI chr10:17,741,512...17,751,626 JBrowse link
regulation of mRNA stability involved in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 involved_in ISO
ISS
(PMID:17101699)
GO_REF:0000024
RGD
UniProt
PMID:17101699 GO_REF:0000024 NCBI chr10:80,908,300...80,951,097 JBrowse link
regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:31636267) RGD PMID:31636267 NCBI chr13:73,174,075...73,245,762 JBrowse link
regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casc3 CASC3 exon junction complex subunit involved_in ISO
IEA
(PMID:19478851)
GO_REF:0000107
RGD
Ensembl
PMID:19478851 GO_REF:0000107 NCBI chr10:83,769,014...83,788,966 JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:19478851) RGD PMID:19478851 NCBI chr10:105,047,567...105,057,561 JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in ISO
IEA
(PMID:19478851)
GO_REF:0000107
RGD
Ensembl
PMID:19478851 GO_REF:0000107 NCBI chr 5:122,639,268...122,646,650 JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:19478851) RGD PMID:19478851 NCBI chr 2:186,854,018...186,856,802 JBrowse link
regulation of RNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlrp5 NLR family, pyrin domain containing 5 acts_upstream_of_or_within ISO MGI:2178449 (PMID:11062459) RGD PMID:11062459 NCBI chr 1:67,778,037...67,810,941 JBrowse link
regulation of rRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx49 DEAD-box helicase 49 involved_in ISO (PMID:29618122) RGD PMID:29618122 NCBI chr16:19,125,388...19,133,042 JBrowse link
RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in ISO (PMID:17174896) RGD PMID:17174896 NCBI chr15:82,231,922...82,258,299 JBrowse link
G Dis3l DIS3-like exosome 3'-5' exoribonuclease involved_in ISO (PMID:20531386) RGD PMID:20531386 NCBI chr 8:64,803,925...64,840,306 JBrowse link
G Exosc1 exosome component 1 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 1:240,734,777...240,745,431 JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 5:164,278,414...164,302,067 JBrowse link
G Exosc2 exosome component 2 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 3:14,962,930...14,973,645 JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 5:64,369,495...64,374,711 JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 7:109,928,491...109,931,233 JBrowse link
G Exosc5 exosome component 5 involved_in
acts_upstream_of_or_within
ISO (PMID:17174896), (PMID:20531386)
(PMID:21670248)
RGD PMID:17174896 PMID:20531386 PMID:21670248 NCBI chr 1:90,295,495...90,305,047 JBrowse link
G Exosc6 exosome component 6 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr19:39,022,171...39,023,585 JBrowse link
G Exosc7 exosome component 7 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 8:122,773,607...122,798,943 JBrowse link
G Exosc8 exosome component 8 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 2:138,930,405...138,937,009 JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:17174896), (PMID:20531386) RGD PMID:17174896 PMID:20531386 NCBI chr 2:121,344,154...121,355,110 JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 involved_in ISO
IBA
(PMID:11401564)
GO_REF:0000033
RGD
GO_Central
PMID:11401564 GO_REF:0000033 NCBI chr 1:142,234,729...142,246,403 JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO
IBA
(PMID:29906447)
GO_REF:0000033
RGD
GO_Central
PMID:29906447 GO_REF:0000033 NCBI chr 2:44,500,326...44,560,624 JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:25578728) RGD PMID:25578728 NCBI chr 5:65,211,632...65,244,532 JBrowse link
G Oas2 2'-5' oligoadenylate synthetase 2 acts_upstream_of_or_within ISO (PMID:15865429) RGD PMID:15865429 NCBI chr12:35,802,824...35,830,778 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083836) RGD PMID:18083836 NCBI chr14:102,877,553...102,908,696 JBrowse link
G Rnaseh2a ribonuclease H2, subunit A involved_in ISS
ISO
GO_REF:0000024
(PMID:21177858)
UniProt
RGD
PMID:21177858 GO_REF:0000024 NCBI chr19:40,091,206...40,100,904 JBrowse link
G Rnaseh2b ribonuclease H2, subunit B involved_in ISO
IBA
IEA
ISS
(PMID:21177858)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:21177858 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr15:36,541,200...36,592,016 JBrowse link
G Rnaseh2c ribonuclease H2, subunit C involved_in ISO
IBA
(PMID:21177858)
GO_REF:0000033
RGD
GO_Central
PMID:21177858 GO_REF:0000033 NCBI chr 1:202,894,626...202,895,675 JBrowse link
G Rnaset2 ribonuclease T2 involved_in ISO
IBA
(PMID:22735700)
GO_REF:0000033
RGD
GO_Central
PMID:22735700 GO_REF:0000033 NCBI chr 1:52,576,344...52,603,151 JBrowse link
G Rnaset2-ps1 ribonuclease T2, pseudogene 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:138,600,084...138,600,943 JBrowse link
G Secisbp2 SECIS binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:27956496)
Ensembl
RGD
PMID:27956496 GO_REF:0000107 NCBI chr17:13,538,513...13,569,573 JBrowse link
G Sidt2 SID1 transmembrane family, member 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:27046251), (PMID:28724756)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:27046251 PMID:28724756 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:55,129,091...55,146,446 JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO
ISS
(PMID:18678873)
GO_REF:0000024
RGD
UniProt
PMID:18678873 GO_REF:0000024 NCBI chr20:30,378,542...30,399,076 JBrowse link
RNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease involved_in ISS
ISO
GO_REF:0000024
(PMID:23523372)
UniProt
RGD
PMID:23523372 GO_REF:0000024 NCBI chr20:3,993,322...3,995,484 JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:48,865,329...48,964,769 JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B acts_upstream_of_or_within ISO MGI:1857262 (PMID:11588035) RGD PMID:11588035 NCBI chr 5:157,070,642...157,104,216 JBrowse link
G Zc3h18 zinc finger CCCH-type containing 18 involved_in IEA
ISO
GO_REF:0000107
(PMID:28297668)
Ensembl
RGD
PMID:28297668 GO_REF:0000107 NCBI chr19:50,434,864...50,479,855 JBrowse link
G Zfp36 zinc finger protein 36 acts_upstream_of_or_within ISO MGI:2652418 (PMID:11588035) RGD PMID:11588035 NCBI chr 1:92,796,628...92,799,108 JBrowse link
RNA fragment catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbr1 debranching RNA lariats 1 involved_in ISO (PMID:37656279) RGD PMID:37656279 NCBI chr 8:100,139,039...100,150,768 JBrowse link
RNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp2 insulin-like growth factor 2 mRNA binding protein 2 involved_in ISO (PMID:36354136) RGD PMID:36354136 NCBI chr11:92,378,908...92,478,893