Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:transcription elongation-coupled chromatin remodeling
go back to main search page
Accession:GO:0140673 term browser browse the term
Definition:A chromatin remodeling process that reestablishes the chromatin structure following the passage of RNA polymerase II during transcription elongation, thus preventing cryptic transcription initiation.
Comment:Note: Do not confuse with 'GO:0045815 transcriptional initiation-coupled chromatin remodeling', which describes the maintenance of chromatin in an open conformation, allowing the transcriptional machinery to access the DNA.
Synonyms:exact_synonym: co-transcriptional chromatin reassembly;   euchromatin maintenance during transcription elongation;   maintenance of chromatin integrity during transcription elongation by RNAPII;   maintenance of transcriptionally active chromatin during transcription elongation;   transciptional elongation-coupled chromatin remodeling;   transcriptional elongation-coupled chromatin remodeling
 related_synonym: DNA replication-independent chromatin organization;   chromatin maintenance during transcription elongation


show annotations for term's descendants           Sort by:
transcription elongation-coupled chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk9 cyclin-dependent kinase 9 involved_in ISO
IEA 		(PMID:19844166)
GO_REF:0000107 		RGD
Ensembl		 PMID:19844166 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G ENSRNOG00000068353 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:258,030,937...258,037,823 JBrowse link
G ENSRNOG00000069559 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:64,095,041...64,095,714 JBrowse link
G Epop elongin BC and polycomb repressive complex 2 associated protein involved_in ISO
IEA 		(PMID:27863226)
GO_REF:0000107 		RGD
Ensembl		 PMID:27863226 GO_REF:0000107 NCBI chr10:82,624,392...82,625,912
Ensembl chr10:82,624,392...82,625,912 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog involved_in ISO
IEA
IBA 		(PMID:29759984)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:29759984 GO_REF:0000033 GO_REF:0000107 NCBI chr10:10,532,036...10,567,639
Ensembl chr10:10,532,154...10,567,637 		JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in ISO
IEA 		(PMID:19141475)
GO_REF:0000107 		RGD
Ensembl		 PMID:19141475 GO_REF:0000107 NCBI chr18:23,695,496...23,737,363
Ensembl chr18:23,695,425...23,736,172 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO
IEA 		(PMID:24526689)
GO_REF:0000107 		RGD
Ensembl		 PMID:24526689 GO_REF:0000107 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO
IEA 		(PMID:23503590)
GO_REF:0000002
GO_REF:0000107 		RGD
InterPro
Ensembl		 PMID:23503590 GO_REF:0000002 GO_REF:0000107 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780 		JBrowse link
G Usp15 ubiquitin specific peptidase 15 involved_in ISO
ISS
IEA
IBA 		(PMID:24526689)
GO_REF:0000024
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:24526689 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:58,756,714...58,848,778
Ensembl chr 7:58,756,872...58,848,721 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISO (PMID:27863226) RGD PMID:27863226 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:6,828,795...6,925,355 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cellular component organization or biogenesis 7114
        cellular component organization 6827
          chromatin organization 836
            chromatin remodeling 681
              transcription elongation-coupled chromatin remodeling 12
Path 2
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      metabolic process 12158
        primary metabolic process 10727
          nucleobase-containing compound metabolic process 5900
            nucleobase-containing compound biosynthetic process 4809
              nucleic acid biosynthetic process 4524
                RNA biosynthetic process 4407
                  DNA-templated transcription 3579
                    transcription by RNA polymerase II 2698
                      transcription elongation by RNA polymerase II 110
                        transcription elongation-coupled chromatin remodeling 12
paths to the root