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ONTOLOGY REPORT - ANNOTATIONS


Term:mitochondrial gene expression
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Accession:GO:0140053 term browser browse the term
Definition:The process in which a mitochondrial gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
Synonyms:only_in_taxon: NCBITaxon:2759 ! Eukaryota



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mitochondrial gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:26149919) RGD PMID:26149919 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838
JBrowse link
mitochondrial alanyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aars2 alanyl-tRNA synthetase 2, mitochondrial involved_in ISO
IEA
(PMID:21549344)
GO_REF:0000107
RGD
Ensembl
PMID:21549344 GO_REF:0000107 NCBI chr 9:22,981,880...22,993,536
Ensembl chr 9:15,297,531...15,496,090
JBrowse link
mitochondrial asparaginyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dars2 aspartyl-tRNA synthetase 2 (mitochondrial) involved_in ISS
ISO
GO_REF:0000024
(PMID:23275545)
UniProt
RGD
PMID:23275545 GO_REF:0000024 NCBI chr13:75,842,078...75,870,319
Ensembl chr13:73,308,726...73,336,934
JBrowse link
mitochondrial glycyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gars1 glycyl-tRNA synthetase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:85,484,939...85,542,876
Ensembl chr 4:84,171,596...84,212,609
JBrowse link
mitochondrial mRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 involved_in ISO (PMID:36180430) RGD PMID:36180430 NCBI chr13:102,509,111...102,529,501
Ensembl chr13:102,510,589...102,529,493
JBrowse link
mitochondrial mRNA polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:107,078,486...107,109,628
Ensembl chr14:102,877,553...102,908,696
JBrowse link
mitochondrial mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISS
ISO
GO_REF:0000024
(PMID:28335001)
UniProt
RGD
PMID:28335001 GO_REF:0000024 NCBI chr14:81,481,977...81,490,781
Ensembl chr14:81,481,981...81,490,756
JBrowse link
mitochondrial RNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtpap mitochondrial poly(A) polymerase involved_in ISO (PMID:21292163) RGD PMID:21292163 NCBI chr17:53,320,739...53,341,500
Ensembl chr17:53,320,741...53,341,538
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO
IBA
(PMID:18083837)
GO_REF:0000033
RGD
GO_Central
PMID:18083837 GO_REF:0000033 NCBI chr14:107,078,486...107,109,628
Ensembl chr14:102,877,553...102,908,696
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISS
IBA
IEA
ISO
GO_REF:0000024
GO_REF:0000033
GO_REF:0000107
(PMID:19864255)
UniProt
GO_Central
Ensembl
RGD
PMID:19864255 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr20:30,921,248...30,941,779
Ensembl chr20:30,378,550...30,399,054
JBrowse link
mitochondrial RNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083837) RGD PMID:18083837 NCBI chr14:107,078,486...107,109,628
Ensembl chr14:102,877,553...102,908,696
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS
(PMID:21593607)
GO_REF:0000024
RGD
UniProt
PMID:21593607 GO_REF:0000024 NCBI chr11:58,053,455...58,058,533
Ensembl chr11:44,584,113...44,589,568
JBrowse link
mitochondrial RNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastk Fas-activated serine/threonine kinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:11,624,697...11,628,769
Ensembl chr 4:10,732,256...10,737,430
JBrowse link
G Fastkd1 FAST kinase domains 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:54,449,710...54,475,624
Ensembl chr 3:54,449,711...54,475,540
JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Fastkd3 FAST kinase domains 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:36,686,727...36,695,376
Ensembl chr 1:34,858,219...34,866,973
JBrowse link
G Fastkd5 FAST kinase domains 5 involved_in ISO (PMID:25683715) RGD PMID:25683715 NCBI chr 3:117,830,219...117,847,707
Ensembl chr 3:117,830,083...117,847,820
JBrowse link
G Tbrg4 transforming growth factor beta regulator 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:81,481,977...81,490,781
Ensembl chr14:81,481,981...81,490,756
JBrowse link
mitochondrial seryl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sars2 seryl-tRNA synthetase 2, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:84,028,972...84,040,725
Ensembl chr 1:84,028,986...84,040,725
JBrowse link
mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxo3 forkhead box O3 involved_in ISO (PMID:29445193)
(PMID:23283301)
RGD PMID:23283301 PMID:29445193 NCBI chr20:47,251,968...47,348,254
Ensembl chr20:45,672,995...45,764,561
JBrowse link
G Mrpl12 mitochondrial ribosomal protein L12 involved_in ISO (PMID:17337445) RGD PMID:17337445 NCBI chr10:106,256,746...106,261,249
Ensembl chr10:105,758,410...105,762,913
JBrowse link
G Mterf3 mitochondrial transcription termination factor 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:65,711,654...65,729,926
Ensembl chr 7:63,826,427...63,844,658
JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
MGI:2182095|MGI:5288505 (PMID:21531335)
GO_Central
RGD
PMID:21531335 GO_REF:0000033 NCBI chr 9:101,281,560...101,286,236
Ensembl chr 9:93,834,144...93,838,864
JBrowse link
G Polr1a RNA polymerase I subunit A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:105,508,305...105,572,272
Ensembl chr 4:103,950,051...104,014,020
JBrowse link
G Polr1b RNA polymerase I subunit B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:136,787,130...136,811,608
Ensembl chr 3:116,333,889...116,358,379
JBrowse link
G Polr2a RNA polymerase II subunit A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:54,951,162...54,977,179
Ensembl chr10:54,452,441...54,478,455
JBrowse link
G Polr2b RNA polymerase II subunit B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:31,151,534...31,189,222
Ensembl chr14:30,797,228...30,834,916
JBrowse link
G Polr3a RNA polymerase III subunit A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:56,066...95,060
Ensembl chr16:49,521...88,172
JBrowse link
G Polr3b RNA polymerase III subunit B involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:20,926,866...21,030,133
Ensembl chr 7:19,038,552...19,142,598
JBrowse link
G Polrmt RNA polymerase mitochondrial involved_in ISO
IBA
(PMID:21278163)
GO_REF:0000033
RGD
GO_Central
PMID:21278163 GO_REF:0000033 NCBI chr 7:10,610,149...10,620,411
Ensembl chr 7:9,959,576...9,969,791
JBrowse link
G Ppargc1b PPARG coactivator 1 beta involved_in IEA
ISO
GO_REF:0000107
(PMID:19252502)
Ensembl
RGD
PMID:19252502 GO_REF:0000107 NCBI chr18:57,029,264...57,131,466
Ensembl chr18:54,758,902...54,861,194
JBrowse link
G Slc25a33 solute carrier family 25 member 33 involved_in ISO (PMID:20453889) RGD PMID:20453889 NCBI chr 5:160,195,040...160,219,961
Ensembl chr 5:160,195,042...160,219,961
JBrowse link
G Tefm transcription elongation factor, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:65,119,657...65,124,233
Ensembl chr10:65,119,659...65,124,486
JBrowse link
G Tfam transcription factor A, mitochondrial involved_in ISO (PMID:22037171)
(PMID:2628167)
RGD PMID:2628167 PMID:22037171 NCBI chr20:17,355,373...17,367,422
Ensembl chr20:17,356,197...17,368,292
JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in ISO (PMID:12068295) RGD PMID:12068295 NCBI chr13:93,810,859...93,828,678
Ensembl chr13:91,278,898...91,296,657
JBrowse link
G Twnk twinkle mtDNA helicase involved_in ISO (PMID:18971204) RGD PMID:18971204 NCBI chr 1:253,817,074...253,823,958
Ensembl chr 1:243,868,330...243,874,802
JBrowse link
mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chchd1 coiled-coil-helix-coiled-coil-helix domain containing 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:3,592,719...3,593,901
Ensembl chr15:3,592,727...3,593,901
JBrowse link
G ENSRNOG00000064147 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr15:54,413,775...54,415,497 JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in ISO
IEA
ISS
(PMID:26370583)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:26370583 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Gatb glutamyl-tRNA amidotransferase subunit B involved_in ISO
IBA
(PMID:19805282)
GO_REF:0000033
RGD
GO_Central
PMID:19805282 GO_REF:0000033 NCBI chr 2:170,930,547...171,017,133
Ensembl chr 2:170,930,542...171,016,695
JBrowse link
G Gatc glutamyl-tRNA amidotransferase subunit C involved_in ISO
IBA
IEA
(PMID:19805282)
GO_REF:0000033
GO_REF:0000104
RGD
GO_Central
UniProt
PMID:19805282 GO_REF:0000033 GO_REF:0000104 NCBI chr12:41,270,096...41,278,067
Ensembl chr12:41,270,087...41,277,995
JBrowse link
G Gfm2 GTP dependent ribosome recycling factor mitochondrial 2 involved_in ISO
IBA
IEA
ISS
(PMID:19716793)
GO_REF:0000033
GO_REF:0000104
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:19716793 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 2:28,449,452...28,488,200
Ensembl chr 2:28,449,517...28,488,197
JBrowse link
G Hars1 histidyl-tRNA synthetase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:28,655,669...28,672,712
Ensembl chr18:28,381,655...28,398,740
JBrowse link
G Iars2 isoleucyl-tRNA synthetase 2, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:99,363,035...99,397,068
Ensembl chr13:96,831,484...96,865,501
JBrowse link
G Lars2 leucyl-tRNA synthetase 2, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:123,010,271...123,106,395
Ensembl chr 8:123,010,293...123,106,395
JBrowse link
G Mrpl16 mitochondrial ribosomal protein L16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:208,633,671...208,638,483
Ensembl chr 1:208,633,586...208,640,667
JBrowse link
G Mrpl2 mitochondrial ribosomal protein L2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:14,333,233...14,337,006
Ensembl chr 9:14,333,234...14,337,040
JBrowse link
G Mrpl23 mitochondrial ribosomal protein L23 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:207,116,930...207,124,702
Ensembl chr 1:197,687,347...197,695,222
JBrowse link
G Mrpl43 mitochondrial ribosomal protein L43 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:243,866,848...243,868,285
Ensembl chr 1:243,866,931...243,868,281
JBrowse link
G Mrpl45 mitochondrial ribosomal protein L45 involved_in ISO (PMID:33602856) RGD PMID:33602856 NCBI chr10:82,805,039...82,816,862
Ensembl chr10:82,308,427...82,320,474
JBrowse link
G Mrpl47 mitochondrial ribosomal protein L47 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:115,507,842...115,520,093
Ensembl chr 2:115,500,264...115,518,994
JBrowse link
G Mrps14 mitochondrial ribosomal protein S14 involved_in ISO (PMID:30358850) RGD PMID:30358850 NCBI chr13:72,429,168...72,434,915
Ensembl chr13:72,408,558...72,434,915
JBrowse link
G Mrps18b mitochondrial ribosomal protein S18B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:2,842,978...2,849,065
Ensembl chr20:2,838,030...2,844,260
JBrowse link
G Mrps27 mitochondrial ribosomal protein S27 involved_in ISO (PMID:22841715) RGD PMID:22841715 NCBI chr 2:32,474,178...32,542,741
Ensembl chr 2:30,740,033...30,808,577
JBrowse link
G Mrps28 mitochondrial ribosomal protein S28 involved_in ISO (PMID:30566640) RGD PMID:30566640 NCBI chr 2:94,728,034...94,858,641
Ensembl chr 2:92,820,606...92,951,284
JBrowse link
G Mrps34 mitochondrial ribosomal protein S34 involved_in ISO
IBA
(PMID:28777931)
GO_REF:0000033
(PMID:25816300)
RGD
GO_Central
PMID:25816300 PMID:28777931 GO_REF:0000033 NCBI chr10:14,420,543...14,421,674
Ensembl chr10:13,916,026...13,918,406
JBrowse link
G Mrps35 mitochondrial ribosomal protein S35 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:179,958,067...179,988,752
Ensembl chr 4:179,958,083...179,987,710
JBrowse link
G Mrps7 mitochondrial ribosomal protein S7 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr10:101,342,642...101,345,790
Ensembl chr10:100,843,356...100,847,129
JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:194,931,543...194,944,278
Ensembl chr 1:194,931,531...194,944,277
JBrowse link
G Ptcd1 pentatricopeptide repeat domain 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr12:9,445,656...9,463,434
Ensembl chr12:9,445,714...9,463,508
JBrowse link
G Ptcd3 Pentatricopeptide repeat domain 3 involved_in ISO
IBA
(PMID:19427859)
GO_REF:0000033
RGD
GO_Central
PMID:19427859 GO_REF:0000033 NCBI chr 4:103,922,440...103,957,445
Ensembl chr 4:103,920,566...103,957,538
JBrowse link
G Qrsl1 glutaminyl-tRNA amidotransferase subunit QRSL1 involved_in
acts_upstream_of_or_within
ISO
IBA
IEA
(PMID:19805282)
(PMID:24579914)
GO_REF:0000033
GO_REF:0000104
RGD
GO_Central
UniProt
PMID:19805282 PMID:24579914 GO_REF:0000033 GO_REF:0000104 NCBI chr20:47,357,206...47,382,160
Ensembl chr20:47,357,216...47,382,135
JBrowse link
G Rars2 arginyl-tRNA synthetase 2, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:49,181,517...49,238,664
Ensembl chr 5:49,181,565...49,233,276
JBrowse link
mitochondrial translational elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gfm1 G elongation factor, mitochondrial 1 involved_in ISO
IBA
IEA
ISS
(PMID:19716793)
GO_REF:0000033
GO_REF:0000104
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:19716793 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 2:151,700,573...151,745,477
Ensembl chr 2:151,700,564...151,745,471
JBrowse link
G Gfm2 GTP dependent ribosome recycling factor mitochondrial 2 NOT|involved_in ISO (PMID:19716793) RGD PMID:19716793 NCBI chr 2:28,449,452...28,488,200
Ensembl chr 2:28,449,517...28,488,197
JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 involved_in ISO (PMID:23315540) RGD PMID:23315540 NCBI chr 9:88,555,050...88,560,101
Ensembl chr 9:81,106,655...81,112,812
JBrowse link
G mt-Tp mitochondrially encoded tRNA proline IDA RGD PMID:424302 RGD:2317000 NCBI chr MT:15,348...15,415
NCBI chr MT:15,348...15,415
NCBI chr MT:15,348...15,415
NCBI chr MT:15,348...15,415
JBrowse link
G Tsfm Ts translation elongation factor, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:64,714,330...64,750,106
Ensembl chr 7:62,845,488...62,864,769
JBrowse link
G Tufm Tu translation elongation factor, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:190,504,373...190,507,980
Ensembl chr 1:181,073,788...181,077,395
JBrowse link
mitochondrial translational initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtif2 mitochondrial translational initiation factor 2 involved_in ISS
IBA
GO_REF:0000024
GO_REF:0000033
BHF-UCL
GO_Central
GO_REF:0000024 GO_REF:0000033 NCBI chr14:107,465,719...107,486,663
Ensembl chr14:103,270,039...103,285,728
JBrowse link
G Mtif3 mitochondrial translational initiation factor 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:8,126,193...8,140,706
Ensembl chr12:8,126,276...8,140,470
JBrowse link
mitochondrial translational termination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mrpl58 mitochondrial ribosomal protein L58 involved_in ISO
IBA
(PMID:20186120)
GO_REF:0000033
RGD
GO_Central
PMID:20186120 GO_REF:0000033 NCBI chr10:100,646,374...100,652,871
Ensembl chr10:100,646,216...100,652,871
JBrowse link
G Mtrf1 mitochondrial translation release factor 1 involved_in ISO
IBA
(PMID:37141370)
GO_REF:0000033
RGD
GO_Central
PMID:37141370 GO_REF:0000033 NCBI chr15:54,776,885...54,804,699
Ensembl chr15:54,776,937...54,804,704
JBrowse link
G Mtrf1l mitochondrial translation release factor 1 like involved_in ISO
IBA
IEA
ISS
(PMID:17803939), (PMID:20075246), (PMID:33878294)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024
RGD
GO_Central
Ensembl
UniProt
PMID:17803939 PMID:20075246 PMID:33878294 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:44,614,162...44,626,367
Ensembl chr 1:42,210,583...42,220,836
JBrowse link
mitochondrial tRNA 3'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 involved_in ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000107
(PMID:21593607)
GO_REF:0000033
UniProt
Ensembl
RGD
GO_Central
PMID:21593607 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:50,131,449...50,154,755
Ensembl chr10:49,632,378...49,655,614
JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:29040705)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:29040705 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:24,568,551...24,571,012
Ensembl chr  X:21,089,122...21,109,488
JBrowse link
G LOC100911093 CCA tRNA nucleotidyltransferase 1, mitochondrial-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:170,720,730...170,722,745
Ensembl chr 1:170,721,272...170,722,576
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:29040705) RGD PMID:29040705 NCBI chr11:58,053,455...58,058,533
Ensembl chr11:44,584,113...44,589,568
JBrowse link
G Trnt1 tRNA nucleotidyl transferase 1 involved_in ISO
IBA
(PMID:11504732)
GO_REF:0000033
RGD
GO_Central
PMID:11504732 GO_REF:0000033 NCBI chr 4:141,236,937...141,259,700
Ensembl chr 4:139,680,858...139,703,611
JBrowse link
mitochondrial tRNA 5'-end processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:24549042), (PMID:25925575), (PMID:28888424), (PMID:29040705), (PMID:29880640)
UniProt
Ensembl
RGD
PMID:24549042 PMID:25925575 PMID:28888424 PMID:29040705 PMID:29880640 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:24,568,551...24,571,012
Ensembl chr  X:21,089,122...21,109,488
JBrowse link
G Prorp protein only RNase P catalytic subunit involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:25953853), (PMID:29880640)
UniProt
GO_Central
RGD
PMID:25953853 PMID:29880640 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:78,404,821...78,497,562
Ensembl chr 6:72,670,847...72,762,416
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:29040705), (PMID:29880640)
UniProt
GO_Central
RGD
PMID:29040705 PMID:29880640 GO_REF:0000024 GO_REF:0000033 NCBI chr11:58,053,455...58,058,533
Ensembl chr11:44,584,113...44,589,568
JBrowse link
mitochondrial tRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:23042678), (PMID:25925575), (PMID:28888424)
UniProt
Ensembl
RGD
PMID:23042678 PMID:25925575 PMID:28888424 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:24,568,551...24,571,012
Ensembl chr  X:21,089,122...21,109,488
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO (PMID:23042678) RGD PMID:23042678 NCBI chr11:58,053,455...58,058,533
Ensembl chr11:44,584,113...44,589,568
JBrowse link
G Trmt5 tRNA methyltransferase 5 involved_in ISO
IBA
(PMID:26189817)
GO_REF:0000033
RGD
GO_Central
PMID:26189817 GO_REF:0000033 NCBI chr 6:91,963,558...91,987,660
Ensembl chr 6:91,943,724...91,987,555
JBrowse link
mitochondrial tRNA modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:5750452 (PMID:25738458)
GO_REF:0000033
RGD
GO_Central
PMID:25738458 GO_REF:0000033 NCBI chr 3:163,189,435...163,333,003
Ensembl chr 3:142,708,028...142,872,677
JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131) RGD PMID:34774131 NCBI chr 3:76,140,465...76,271,367
Ensembl chr 3:55,770,167...55,863,676
JBrowse link
G Trit1 tRNA isopentenyltransferase 1 involved_in ISO (PMID:34774131)
(PMID:24901367)
RGD PMID:24901367 PMID:34774131 NCBI chr 5:135,293,472...135,341,522
Ensembl chr 5:135,295,330...135,338,764
JBrowse link
mitochondrial tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
ISS
(PMID:27132592)
GO_REF:0000024
RGD
UniProt
PMID:27132592 GO_REF:0000024 NCBI chr11:58,053,455...58,058,533
Ensembl chr11:44,584,113...44,589,568
JBrowse link
mitochondrial tRNA pseudouridine synthesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO (PMID:28082677) RGD PMID:28082677 NCBI chr 8:41,875,217...41,884,702
Ensembl chr 8:33,617,379...33,626,873
JBrowse link
mitochondrial tRNA wobble uridine modification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mto1 mitochondrial tRNA translation optimization 1 acts_upstream_of_or_within
involved_in
ISO
IBA
SGD:S000003205 (PMID:14522080)
GO_REF:0000033
RGD
GO_Central
PMID:14522080 GO_REF:0000033 NCBI chr 8:88,188,918...88,215,516
Ensembl chr 8:79,309,982...79,335,231
JBrowse link
mitochondrial tryptophanyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wars2 tryptophanyl tRNA synthetase 2 (mitochondrial) involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:189,150,322...189,233,606
Ensembl chr 2:186,459,444...186,543,571
JBrowse link
mitochondrial tyrosyl-tRNA aminoacylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Yars2 tyrosyl-tRNA synthetase 2 involved_in ISO
IEA
(PMID:20598274)
GO_REF:0000107
RGD
Ensembl
PMID:20598274 GO_REF:0000107 NCBI chr11:84,632,350...84,638,138
Ensembl chr11:84,624,369...84,638,125
JBrowse link
negative regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Malsu1 mitochondrial assembly of ribosomal large subunit 1 involved_in ISO (PMID:22829778) RGD PMID:22829778 NCBI chr 4:78,051,090...78,059,913
Ensembl chr 4:78,051,059...78,059,905
JBrowse link
positive regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chchd10 coiled-coil-helix-coiled-coil-helix domain containing 10 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:12,725,274...12,730,295
Ensembl chr20:12,725,842...12,732,763
JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 involved_in ISO (PMID:23283301) RGD PMID:23283301 NCBI chr 2:55,967,766...56,003,450
Ensembl chr 2:54,240,137...54,275,978
JBrowse link
G Sirt3 sirtuin 3 involved_in ISO (PMID:23283301) RGD PMID:23283301 NCBI chr 1:205,371,703...205,394,145
Ensembl chr 1:195,942,073...195,964,808
JBrowse link
G Tefm transcription elongation factor, mitochondrial involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:21278163)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:21278163 GO_REF:0000024 GO_REF:0000107 NCBI chr10:65,119,657...65,124,233
Ensembl chr10:65,119,659...65,124,486
JBrowse link
positive regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1qbp complement C1q binding protein involved_in ISS
ISO
GO_REF:0000024
(PMID:22904065)
UniProt
RGD
PMID:22904065 GO_REF:0000024 NCBI chr10:56,198,534...56,203,185
Ensembl chr10:55,699,954...55,704,649
JBrowse link
G Cdk5rap1 CDK5 regulatory subunit associated protein 1 acts_upstream_of_or_within ISO MGI:5750452 (PMID:25738458) RGD PMID:25738458 NCBI chr 3:163,189,435...163,333,003
Ensembl chr 3:142,708,028...142,872,677
JBrowse link
G Coa3 cytochrome C oxidase assembly factor 3 involved_in ISO (PMID:23260140) RGD PMID:23260140 NCBI chr10:86,220,192...86,221,173
Ensembl chr10:86,220,194...86,221,178
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked involved_in ISO (PMID:28869602) RGD PMID:28869602 NCBI chr  X:12,152,346...12,165,983
Ensembl chr  X:9,479,532...9,493,168
JBrowse link
G Fastkd2 FAST kinase domains 2 involved_in ISO
IEA
ISS
(PMID:27667664)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27667664 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:65,166,148...65,188,184
Ensembl chr 9:65,168,228...65,188,174
JBrowse link
G Fastkd3 FAST kinase domains 3 involved_in ISO
ISS
(PMID:27789713)
GO_REF:0000024
RGD
UniProt
PMID:27789713 GO_REF:0000024 NCBI chr 1:36,686,727...36,695,376
Ensembl chr 1:34,858,219...34,866,973
JBrowse link
G LOC134479940 mitochondrial ribosome and complex I assembly factor AltMIEF1 involved_in ISO (PMID:30215512) RGD PMID:30215512 Ensembl chr 7:111,786,726...111,792,148 JBrowse link
G Mettl8 methyltransferase 8, tRNA N3-cytidine involved_in ISO (PMID:34774131), (PMID:35017528) RGD PMID:34774131 PMID:35017528 NCBI chr 3:76,140,465...76,271,367
Ensembl chr 3:55,770,167...55,863,676
JBrowse link
G Mief1 mitochondrial elongation factor 1 involved_in ISO (PMID:30215512) RGD PMID:30215512 NCBI chr 7:111,786,630...111,802,220
Ensembl chr 7:111,786,709...111,802,220
JBrowse link
G Mpv17l2 MPV17 mitochondrial inner membrane protein like 2 involved_in ISO (PMID:24948607) RGD PMID:24948607 NCBI chr16:18,680,106...18,684,212
Ensembl chr16:18,681,826...18,684,212
JBrowse link
G Ngrn neugrin, neurite outgrowth associated involved_in ISO
ISS
(PMID:27667664)
GO_REF:0000024
RGD
UniProt
PMID:27667664 GO_REF:0000024 NCBI chr 1:143,622,494...143,628,609
Ensembl chr 1:134,213,456...134,219,339
JBrowse link
G Nsun4 NOP2/Sun RNA methyltransferase 4 involved_in ISO (PMID:24516400) RGD PMID:24516400 NCBI chr 5:129,511,224...129,532,498
Ensembl chr 5:129,512,307...129,532,423
Ensembl chr 5:129,512,307...129,532,423
JBrowse link
G Rcc1l RCC1 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:22,543,125...22,574,042
Ensembl chr12:22,543,734...22,574,036
JBrowse link
G Rmnd1 required for meiotic nuclear division 1 homolog involved_in ISO
IBA
(PMID:25604853)
GO_REF:0000033
RGD
GO_Central
PMID:25604853 GO_REF:0000033 NCBI chr 1:43,265,207...43,299,748
Ensembl chr 1:40,859,829...40,894,314
JBrowse link
G Rpusd3 RNA pseudouridine synthase D3 involved_in ISO (PMID:27667664) RGD PMID:27667664 NCBI chr 4:146,553,743...146,562,789
Ensembl chr 4:146,558,562...146,562,794
JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 involved_in ISO
ISS
(PMID:27667664)
GO_REF:0000024
RGD
UniProt
PMID:27667664 GO_REF:0000024 NCBI chr 8:41,875,217...41,884,702
Ensembl chr 8:33,617,379...33,626,873
JBrowse link
G Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit involved_in ISO
IBA
ISS
(PMID:27132592)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:27132592 GO_REF:0000024 GO_REF:0000033 NCBI chr11:58,053,455...58,058,533
Ensembl chr11:44,584,113...44,589,568
JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 involved_in ISO
ISS
(PMID:27667664)
GO_REF:0000024
RGD
UniProt
PMID:27667664 GO_REF:0000024 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930
JBrowse link
G Uqcc2 ubiquinol-cytochrome c reductase complex assembly factor 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:24385928)
UniProt
RGD
PMID:24385928 GO_REF:0000024 NCBI chr20:5,204,682...5,217,080
Ensembl chr20:5,202,837...5,214,164
Ensembl chr17:5,202,837...5,214,164
JBrowse link
regulation of mitochondrial gene expression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rbfox2 RNA binding fox-1 homolog 2 IMP RGD PMID:34731606 RGD:329845875 NCBI chr 7:110,691,230...110,934,901
Ensembl chr 7:108,810,628...109,054,691
JBrowse link
regulation of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bckdk branched chain ketoacid dehydrogenase kinase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 1:191,945,809...191,950,480
Ensembl chr 1:182,515,327...182,536,633
JBrowse link
G Kansl1 KAT8 regulatory NSL complex subunit 1 involved_in ISO (PMID:27768893) RGD PMID:27768893 NCBI chr10:89,737,637...89,868,620
Ensembl chr10:89,237,667...89,366,951
JBrowse link
G Kansl3 KAT8 regulatory NSL complex subunit 3 involved_in ISO
IEA
ISS
(PMID:27768893)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27768893 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:38,562,170...38,605,757
Ensembl chr 9:38,562,177...38,605,692
JBrowse link
G Kat8 lysine acetyltransferase 8 involved_in ISO
IEA
ISS
(PMID:27768893)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:27768893 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:191,954,827...191,967,107
Ensembl chr 1:182,515,327...182,536,633
JBrowse link
G Mettl4 methyltransferase 4, N6-adenosine involved_in ISO (PMID:32183942) RGD PMID:32183942 NCBI chr 9:111,440,976...111,523,871
Ensembl chr 9:111,441,027...111,464,749
JBrowse link
G Mtres1 mitochondrial transcription rescue factor 1 involved_in ISO
IBA
(PMID:31226201)
GO_REF:0000033
RGD
GO_Central
PMID:31226201 GO_REF:0000033 NCBI chr20:47,022,343...47,038,888
Ensembl chr20:47,022,342...47,038,805
JBrowse link
G Thap11 THAP domain containing 11 acts_upstream_of_or_within ISO MGI:3052237|MGI:3797582 (PMID:26876175) RGD PMID:26876175 NCBI chr19:50,656,839...50,658,656
Ensembl chr19:33,746,854...33,749,540
JBrowse link
regulation of mitochondrial translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh1 alkB homolog 1, histone H2A dioxygenase involved_in ISO (PMID:27497299) RGD PMID:27497299 NCBI chr 6:107,068,301...107,088,784
Ensembl chr 6:107,068,475...107,088,759
JBrowse link
G Lrpprc leucine-rich pentatricopeptide repeat containing involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:5438913 (PMID:22045337)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:22045337 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:15,612,638...15,695,113
Ensembl chr 6:9,859,867...9,942,293
JBrowse link
G Mtg1 mitochondrial ribosome-associated GTPase 1 involved_in ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 1:194,931,543...194,944,278
Ensembl chr 1:194,931,531...194,944,277
JBrowse link
G Mtg2 mitochondrial ribosome-associated GTPase 2 involved_in ISO (PMID:23396448) RGD PMID:23396448 NCBI chr 3:167,165,542...167,181,358
Ensembl chr 3:167,165,982...167,181,358
JBrowse link
G Nsun3 NOP2/Sun RNA methyltransferase 3 involved_in ISO (PMID:27356879), (PMID:27497299) RGD PMID:27356879 PMID:27497299 NCBI chr11:37,490,832...37,575,607
Ensembl chr11:37,490,838...37,568,543
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 involved_in ISO (PMID:29364879), (PMID:29452640)
(PMID:29323231), (PMID:29452640)
RGD PMID:29323231 PMID:29364879 PMID:29452640 NCBI chr 7:65,244,247...65,249,580
Ensembl chr 7:63,358,961...63,364,236
JBrowse link
G Taco1 translational activator of cytochrome c oxidase I involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5905291 (PMID:27319982)
Ensembl
RGD
PMID:27319982 GO_REF:0000107 NCBI chr10:91,502,395...91,510,299
Ensembl chr10:91,002,640...91,012,042
JBrowse link
G Tsfm Ts translation elongation factor, mitochondrial involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:27677415)
UniProt
Ensembl
RGD
PMID:27677415 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:64,714,330...64,750,106
Ensembl chr 7:62,845,488...62,864,769
JBrowse link
termination of mitochondrial transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mterf1 mitochondrial transcription termination factor 1 involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:20550934)
UniProt
GO_Central
RGD
PMID:20550934 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:31,181,048...31,188,130
Ensembl chr 4:30,226,343...30,233,584
JBrowse link
G Mterf2 mitochondrial transcription termination factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:20,485,901...20,495,979
Ensembl chr 7:18,598,103...18,620,684
JBrowse link
transcription elongation by mitochondrial RNA polymerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tefm transcription elongation factor, mitochondrial involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:65,119,657...65,124,233
Ensembl chr10:65,119,659...65,124,486
JBrowse link
transcription initiation at mitochondrial promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polrmt RNA polymerase mitochondrial involved_in ISO (PMID:29149603) RGD PMID:29149603 NCBI chr 7:10,610,149...10,620,411
Ensembl chr 7:9,959,576...9,969,791
JBrowse link
G Tfam transcription factor A, mitochondrial involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:20410300), (PMID:29149603)
UniProt
GO_Central
RGD
PMID:20410300 PMID:29149603 GO_REF:0000024 GO_REF:0000033 NCBI chr20:17,355,373...17,367,422
Ensembl chr20:17,356,197...17,368,292
JBrowse link
G Tfb1m transcription factor B1, mitochondrial involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:46,520,510...46,567,004
Ensembl chr 1:44,119,166...44,161,709
JBrowse link
G Tfb2m transcription factor B2, mitochondrial involved_in ISS
IBA
ISO
GO_REF:0000024
GO_REF:0000033
(PMID:20410300), (PMID:29149603)
UniProt
GO_Central
RGD
PMID:20410300 PMID:29149603 GO_REF:0000024 GO_REF:0000033 NCBI chr13:93,810,859...93,828,678
Ensembl chr13:91,278,898...91,296,657
JBrowse link
tRNA aminoacylation for mitochondrial protein translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ears2 glutamyl-tRNA synthetase 2, mitochondrial involved_in ISO (PMID:19805282) RGD PMID:19805282 NCBI chr 1:176,597,986...176,625,848
Ensembl chr 1:176,597,986...176,625,836
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    cellular process 19525
      metabolic process 12160
        macromolecule metabolic process 9981
          macromolecule biosynthetic process 7653
            gene expression 7211
              mitochondrial gene expression 117
                mitochondrial RNA processing + 22
                mitochondrial transcription + 30
                mitochondrial translation + 69
                regulation of mitochondrial gene expression + 40
paths to the root