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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of pigmentation
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Accession:GO:0120305 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of the deposition or modulates the distribution of coloring matter in an organism.


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background adaptation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (PMID:24373883) RGD PMID:24373883 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO MGI:3588845 (PMID:24373883) RGD PMID:24373883 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
negative regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tpcn2 two pore segment channel 2 involved_in ISO (PMID:27140606)
(PMID:27231233)		 RGD PMID:27140606 PMID:27231233 NCBI chr 1:200,416,538...200,446,252
Ensembl chr 1:200,416,540...200,446,236 		JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (PMID:17464332) RGD PMID:17464332 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
positive regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO MGI:99702 (PMID:9241272) RGD PMID:9241272 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:88138 (PMID:9241272) RGD PMID:9241272 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
positive regulation of melanocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:3766915 (PMID:18454205) RGD PMID:18454205 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (PMID:18454205) RGD PMID:18454205 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2158305 (PMID:16427619)		 Ensembl
RGD		 PMID:16427619 GO_REF:0000107 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Kitlg KIT ligand acts_upstream_of_or_within ISO (PMID:16427619) RGD PMID:16427619 NCBI chr 7:34,896,075...34,977,215
Ensembl chr 7:34,896,053...34,977,214 		JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (PMID:24769727) RGD PMID:24769727 NCBI chr 3:29,214,581...29,344,890
Ensembl chr 3:29,218,301...29,345,157 		JBrowse link
positive regulation of pigment cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:17182842) RGD PMID:17182842 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISS
ISO		 GO_REF:0000024
(PMID:17182842)		 UniProt
RGD		 PMID:17182842 GO_REF:0000024 NCBI chr 3:109,816,397...109,826,528
Ensembl chr 3:109,816,366...109,828,308 		JBrowse link
regulation of developmental pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts20 ADAM metallopeptidase with thrombospondin type 1 motif, 20 acts_upstream_of_or_within ISO MGI:1916320|MGI:2675831|MGI:3766915|MGI:96677 (PMID:14138974), (PMID:18454205) RGD PMID:14138974 PMID:18454205 NCBI chr 7:125,396,227...125,528,020
Ensembl chr 7:125,397,734...125,527,777 		JBrowse link
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif, 9 acts_upstream_of_or_within ISO MGI:2660628 (PMID:18454205) RGD PMID:18454205 NCBI chr 4:125,290,633...125,462,988
Ensembl chr 4:125,291,490...125,462,929 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519 (PMID:15818405) RGD PMID:15818405 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:15818405) RGD PMID:15818405 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068 		JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within ISO MGI:1856392 (PMID:14138974) RGD PMID:14138974 NCBI chr 3:163,562,307...163,586,636
Ensembl chr 3:163,562,520...163,585,093 		JBrowse link
G Vps33a VPS33A core subunit of CORVET and HOPS complexes involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1856687 (PMID:12538872)		 Ensembl
RGD		 PMID:12538872 GO_REF:0000107 NCBI chr12:33,024,596...33,051,399
Ensembl chr12:33,024,650...33,051,393 		JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO MGI:4460276 (PMID:22664872) RGD PMID:22664872 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20535
    pigmentation 107
      regulation of pigmentation 16
        background adaptation + 2
        regulation of developmental pigmentation + 14
Path 2
Term Annotations click to browse term
  biological_process 20535
    biological regulation 13817
      regulation of biological process 13372
        regulation of pigmentation 16
          background adaptation + 2
          regulation of developmental pigmentation + 14
paths to the root