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ONTOLOGY REPORT - ANNOTATIONS

Term:lncRNA binding
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Accession:GO:0106222 term browser browse the term
Definition:Binding to a long noncoding RNA (lncRNA).
Synonyms:exact_synonym: long noncoding RNA binding


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lncRNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2a2 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 enables IEA
ISO 		GO_REF:0000107
MGI:1916199 (PMID:29475982) 		Ensembl
RGD		 PMID:29475982 GO_REF:0000107 NCBI chr12:39,733,519...39,782,942
Ensembl chr12:34,072,683...34,122,101 		JBrowse link
G Brd3 bromodomain containing 3 enables ISO
IEA 		(PMID:32895492)
GO_REF:0000107 		RGD
Ensembl		 PMID:32895492 GO_REF:0000107 NCBI chr 3:10,773,163...10,829,675
Ensembl chr 3:10,775,272...10,829,577 		JBrowse link
G Celf1 CUGBP, Elav-like family member 1 enables IEA
ISO 		GO_REF:0000107
MGI:3045386 (PMID:28763438) 		Ensembl
RGD		 PMID:28763438 GO_REF:0000107 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426 		JBrowse link
G Celf2 CUGBP, Elav-like family member 2 enables ISO MGI:3045386 (PMID:28763438) RGD PMID:28763438 NCBI chr17:75,813,928...76,639,300
Ensembl chr17:71,210,853...71,728,333 		JBrowse link
G Csde1 cold shock domain containing E1 enables ISO RNAcentral:URS000075C624_9606 (PMID:36354136) RGD PMID:36354136 NCBI chr 2:193,234,546...193,271,301
Ensembl chr 2:190,554,980...190,582,784 		JBrowse link
G Ctbp1 C-terminal binding protein 1 enables ISO
IEA 		(PMID:34435359)
GO_REF:0000107 		RGD
Ensembl		 PMID:34435359 GO_REF:0000107 NCBI chr14:81,679,956...81,707,331
Ensembl chr14:77,455,696...77,482,821 		JBrowse link
G Ddx17 DEAD-box helicase 17 enables ISO MGI:6278009 (PMID:29431742), (PMID:30622218) RGD PMID:29431742 PMID:30622218 NCBI chr 7:112,971,522...112,989,747
Ensembl chr 7:111,089,445...111,109,193 		JBrowse link
G Dnmt1 DNA methyltransferase 1 enables ISO
IEA 		(PMID:25686699)
GO_REF:0000107 		RGD
Ensembl		 PMID:25686699 GO_REF:0000107 NCBI chr 8:27,716,797...27,763,405
Ensembl chr 8:19,440,611...19,486,659 		JBrowse link
G Dnmt3a DNA methyltransferase 3 alpha enables ISO
IEA 		(PMID:25686699)
(PMID:23435381)
GO_REF:0000107 		RGD
Ensembl		 PMID:23435381 PMID:25686699 GO_REF:0000107 NCBI chr 6:32,507,316...32,621,678
Ensembl chr 6:26,822,609...26,896,687 		JBrowse link
G Dnmt3b DNA methyltransferase 3 beta enables ISO (PMID:25686699) RGD PMID:25686699 NCBI chr 3:162,590,777...162,629,313
Ensembl chr 3:142,130,592...142,169,124 		JBrowse link
G Eef2 eukaryotic translation elongation factor 2 enables ISO
IEA 		(PMID:37612724)
GO_REF:0000107 		RGD
Ensembl		 PMID:37612724 GO_REF:0000107 NCBI chr 7:9,183,836...9,196,255
Ensembl chr 7:8,533,116...8,559,183 		JBrowse link
G Elavl1 ELAV like RNA binding protein 1 enables ISO
IEA 		MGI:3045386 (PMID:28763438), (PMID:33262333)
GO_REF:0000107 		RGD
Ensembl		 PMID:28763438 PMID:33262333 GO_REF:0000107 NCBI chr12:2,640,936...2,684,787
Ensembl chr12:2,645,061...2,684,784 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit enables ISO
IEA 		(PMID:27618650)
GO_REF:0000107 		RGD
Ensembl		 PMID:27618650 GO_REF:0000107 NCBI chr 4:77,624,223...77,698,598
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Hadhb hydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit beta enables ISO (PMID:32513690) RGD PMID:32513690 NCBI chr 6:31,873,404...31,907,557
Ensembl chr 6:26,153,578...26,184,869 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U enables ISO MGI:3650929 (PMID:25921091), (PMID:28636939) RGD PMID:25921091 PMID:28636939 NCBI chr13:92,609,791...92,618,580
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Kdm1a lysine demethylase 1A enables ISO (PMID:27618650) RGD PMID:27618650 NCBI chr 5:148,782,976...148,838,319
Ensembl chr 5:148,782,976...148,838,319 		JBrowse link
G Klf4 KLF transcription factor 4 enables ISO
IEA 		MGI:2443549 (PMID:36662856)
GO_REF:0000107 		RGD
Ensembl		 PMID:36662856 GO_REF:0000107 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G Mir135a microRNA 135a enables ISO (PMID:31545249) RGD PMID:31545249 NCBI chr 7:26,611,990...26,612,089
Ensembl chr 7:26,611,990...26,612,089 		JBrowse link
G Mir185 microRNA 185 enables ISO (PMID:29053187) RGD PMID:29053187 NCBI chr11:82,664,716...82,664,795
Ensembl chr11:82,664,716...82,664,795 		JBrowse link
G Mir195 microRNA 195 enables ISO (PMID:31921616) RGD PMID:31921616 NCBI chr10:54,951,838...54,951,924
Ensembl chr10:54,951,838...54,951,924 		JBrowse link
G Mir223 microRNA 223 enables ISO (PMID:31525642) RGD PMID:31525642 NCBI chr  X:65,151,383...65,151,492
Ensembl chr  X:61,141,887...61,141,996 		JBrowse link
G Mir29a microRNA 29a enables ISO (PMID:31694982) RGD PMID:31694982 NCBI chr 4:60,617,955...60,618,042 JBrowse link
G Mir29b1 microRNA 29b-1 enables ISO (PMID:31694982) RGD PMID:31694982 NCBI chr 4:60,618,334...60,618,414
Ensembl chr 4:59,650,986...59,651,067 		JBrowse link
G Mir29b2 microRNA 29b-2 enables ISO (PMID:31694982) RGD PMID:31694982 NCBI chr13:106,570,371...106,570,451
Ensembl chr13:106,570,367...106,570,456 		JBrowse link
G Mir361 microRNA 361 enables ISO (PMID:31694982) RGD PMID:31694982 NCBI chr  X:78,246,206...78,246,275
Ensembl chr  X:78,246,206...78,246,275 		JBrowse link
G Mir665 microRNA 665 enables ISO (PMID:34454184) RGD PMID:34454184 NCBI chr 6:128,539,440...128,539,533
Ensembl chr 6:128,539,440...128,539,533 		JBrowse link
G Nono non-POU domain containing, octamer-binding IDA Giver RGD PMID:30566058 RGD:155883176 NCBI chr  X:66,554,131...66,571,992
Ensembl chr  X:66,554,098...66,571,952 		JBrowse link
G Pcbp2 poly(rC) binding protein 2 enables ISO (PMID:31361039) RGD PMID:31361039 NCBI chr 7:133,605,375...133,631,312
Ensembl chr 7:133,605,573...133,629,863 		JBrowse link
G Pdia3 protein disulfide isomerase family A, member 3 enables ISO
IEA 		MGI:1925615 (PMID:36647387)
GO_REF:0000107 		RGD
Ensembl		 PMID:36647387 GO_REF:0000107 NCBI chr 3:128,841,781...128,865,733
Ensembl chr 3:108,388,245...108,413,236 		JBrowse link
G Pou1f1 POU class 1 homeobox 1 enables IDA PMID:30982661 MGI PMID:30982661 RGD:151356638 NCBI chr11:16,763,312...16,781,295
Ensembl chr11:3,317,058...3,334,801 		JBrowse link
G Ppargc1a PPARG coactivator 1 alpha enables ISO MGI:2144114 (PMID:27760051) RGD PMID:27760051 NCBI chr14:63,073,505...63,729,215
Ensembl chr14:58,861,144...59,512,656 		JBrowse link
G Ppme1 protein phosphatase methylesterase 1 enables ISO
IEA 		(PMID:31213650)
GO_REF:0000107 		RGD
Ensembl		 PMID:31213650 GO_REF:0000107 NCBI chr 1:154,668,099...154,715,079
Ensembl chr 1:154,668,109...154,715,110 		JBrowse link
G Pum2 pumilio RNA-binding family member 2 enables ISO
IEA 		(PMID:30735131)
GO_REF:0000107 		RGD
Ensembl		 PMID:30735131 GO_REF:0000107 NCBI chr 6:31,462,879...31,542,976
Ensembl chr 6:31,462,872...31,542,976 		JBrowse link
G Rad21 RAD21 cohesin complex component IDA MIAT RGD PMID:33741460 RGD:243065262 NCBI chr 7:85,177,715...85,204,657
Ensembl chr 7:83,287,870...83,314,817 		JBrowse link
G Rbm33 RNA binding motif protein 33 enables ISO
IEA 		(PMID:35589130)
GO_REF:0000107 		RGD
Ensembl		 PMID:35589130 GO_REF:0000107 NCBI chr 4:6,980,807...7,088,334
Ensembl chr 4:6,983,970...7,089,918 		JBrowse link
G Sirt6 sirtuin 6 enables ISO (PMID:27912097) RGD PMID:27912097 NCBI chr 7:8,733,056...8,738,543
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 enables ISO MGI:3642848 (PMID:25119045) RGD PMID:25119045 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 enables ISO
IEA 		(PMID:24744378)
GO_REF:0000107 		RGD
Ensembl		 PMID:24744378 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
G Sugt1 SGT1 homolog, MIS12 kinetochore complex assembly cochaperone enables IEA
ISO 		GO_REF:0000107
MGI:3650059 (PMID:32483152) 		Ensembl
RGD		 PMID:32483152 GO_REF:0000107 NCBI chr15:54,991,419...55,032,244
Ensembl chr15:54,990,672...55,069,150 		JBrowse link
G Suz12 SUZ12 polycomb repressive complex 2 subunit enables ISO
IEA 		MGI:2442953 (PMID:28041882)
GO_REF:0000107 		RGD
Ensembl		 PMID:28041882 GO_REF:0000107 NCBI chr10:64,967,035...65,012,916
Ensembl chr10:64,966,967...65,012,738 		JBrowse link
G Usp17la ubiquitin specific peptidase 17-like A enables ISO (PMID:31674275) RGD PMID:31674275 NCBI chr 1:159,165,961...159,169,738 JBrowse link
G Wdr82 WD repeat domain 82 enables ISO
IEA 		(PMID:35315911)
GO_REF:0000107 		RGD
Ensembl		 PMID:35315911 GO_REF:0000107 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
Term paths to the root
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Term Annotations click to browse term
  molecular_function 21054
    binding 18050
      nucleic acid binding 3928
        RNA binding 1645
          lncRNA binding 42
paths to the root