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ONTOLOGY REPORT - ANNOTATIONS

Term:tRNA pseudouridine synthase activity
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Accession:GO:0106029 term browser browse the term
Definition:Catalysis of the reaction: tRNA uridine = tRNA pseudouridine. Conversion of uridine in a tRNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Synonyms:narrow_synonym: tRNA-uridine isomerase activity;   tRNA-uridine uracilmutase activity;   transfer RNA pseudouridine synthetase activity;   transfer ribonucleate pseudouridine synthetase activity
 xref: RHEA:54572


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tRNA pseudouridine synthase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 enables ISO
IEA		 (PMID:10094309)
GO_REF:0000116
GO_REF:0000107		 RGD
RHEA
Ensembl		 PMID:10094309 GO_REF:0000107 GO_REF:0000116 NCBI chr12:51,539,659...51,548,975
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Pus10 pseudouridine synthase 10 enables ISO
IEA		 (PMID:30530625), (PMID:31819270)
GO_REF:0000107		 RGD
Ensembl		 PMID:30530625 PMID:31819270 GO_REF:0000107 NCBI chr14:97,621,228...97,684,059
Ensembl chr14:97,621,391...97,684,046 		JBrowse link
G Rpusd4 RNA pseudouridine synthase D4 enables IEA GO_REF:0000116 RHEA GO_REF:0000116 NCBI chr 8:33,617,384...33,626,873
Ensembl chr 8:33,617,379...33,626,873 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 enables IEA GO_REF:0000116 RHEA GO_REF:0000116 NCBI chr 1:266,518,510...266,559,633
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
tRNA pseudouridine(13) synthase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus7 pseudouridine synthase 7 enables ISO
IEA		 (PMID:34718722)
GO_REF:0000107		 RGD
Ensembl		 PMID:34718722 GO_REF:0000107 NCBI chr 4:12,252,553...12,293,547
Ensembl chr 4:11,360,188...11,401,172 		JBrowse link
tRNA pseudouridine(38-40) synthase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus1 pseudouridine synthase 1 enables IEA GO_REF:0000003
GO_REF:0000116		 UniProt
RHEA		 GO_REF:0000003 GO_REF:0000116 NCBI chr12:51,539,659...51,548,975
Ensembl chr12:45,880,440...45,889,196 		JBrowse link
G Pusl1 pseudouridine synthase like 1 enables IEA GO_REF:0000003
GO_REF:0000116		 UniProt
RHEA		 GO_REF:0000003 GO_REF:0000116 NCBI chr 5:171,773,284...171,782,893
Ensembl chr 5:166,496,755...166,500,611 		JBrowse link
tRNA pseudouridine(38/39) synthase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus3 pseudouridine synthase 3 enables ISO
IEA		 (PMID:27055666)
GO_REF:0000107		 RGD
Ensembl		 PMID:27055666 GO_REF:0000107 NCBI chr 8:33,910,461...33,918,716
Ensembl chr 8:33,911,357...33,918,714 		JBrowse link
tRNA pseudouridine(55) synthase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pus10 pseudouridine synthase 10 enables IEA GO_REF:0000003 UniProt GO_REF:0000003 NCBI chr14:97,621,228...97,684,059
Ensembl chr14:97,621,391...97,684,046 		JBrowse link
G Trub1 TruB pseudouridine synthase family member 1 enables IEA GO_REF:0000116 RHEA GO_REF:0000116 NCBI chr 1:266,518,510...266,559,633
Ensembl chr 1:256,515,562...256,552,814 		JBrowse link
G Trub2 TruB pseudouridine synthase family member 2 enables IEA GO_REF:0000116 RHEA GO_REF:0000116 NCBI chr 3:13,049,220...13,059,836
Ensembl chr 3:13,033,745...13,059,930 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21100
    catalytic activity 6213
      catalytic activity, acting on a nucleic acid 651
        catalytic activity, acting on RNA 411
          catalytic activity, acting on a tRNA 138
            tRNA pseudouridine synthase activity 8
              mitochondrial tRNA pseudouridine(27/28) synthase activity 0
              tRNA pseudouridine(13) synthase activity 1
              tRNA pseudouridine(31) synthase activity 0
              tRNA pseudouridine(32) synthase activity 0
              tRNA pseudouridine(38-40) synthase activity 2
              tRNA pseudouridine(38/39) synthase activity 1
              tRNA pseudouridine(55) synthase activity 3
              tRNA pseudouridine(65) synthase activity 0
paths to the root