Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:presynaptic cytosol
go back to main search page
Accession:GO:0099523 term browser browse the term
Definition:The region of the cytosol consisting of all cytosol that is part of the presynapse.


show annotations for term's descendants           Sort by:
presynaptic cytosol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anks1b ankyrin repeat and sterile alpha motif domain containing 1B is_active_in IDA PMID:20575057 SynGO PMID:20575057 RGD:13702247 NCBI chr 7:24,313,339...25,479,307
Ensembl chr 7:24,312,843...25,477,693 		JBrowse link
G Arl6ip5 ARF like GTPase 6 interacting protein 5 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:17897781)		 Ensembl
RGD		 PMID:17897781 GO_REF:0000107 NCBI chr 4:129,810,650...129,838,628
Ensembl chr 4:129,810,645...129,838,608 		JBrowse link
G Baiap2 BAR/IMD domain containing adaptor protein 2 is_active_in IDA PMID:15673667 SynGO PMID:15673667 RGD:9684988 NCBI chr10:105,223,065...105,290,130
Ensembl chr10:105,223,090...105,290,134 		JBrowse link
G Calb1 calbindin 1 is_active_in IDA PMID:12528187 SynGO PMID:12528187 RGD:727642 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Calm1 calmodulin 1 is_active_in IDA
NAS		 PMID:22848456 SynGO PMID:22848456 PMID:22848456 RGD:12050095, RGD:12050095 NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227 		JBrowse link
G Calm2 calmodulin 2 is_active_in ISO
IDA
NAS		 (PMID:31628181)
PMID:22848456		 RGD PMID:31628181 PMID:22848456 PMID:22848456 RGD:12050095, RGD:12050095 NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287
Ensembl chr15:7,091,567...7,104,287 		JBrowse link
G Calm3 calmodulin 3 is_active_in IDA
NAS		 PMID:22848456 SynGO PMID:22848456 PMID:22848456 RGD:12050095, RGD:12050095 NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207 		JBrowse link
G Camk2a calcium/calmodulin-dependent protein kinase II alpha is_active_in IDA PMID:17957478 SynGO PMID:17957478 RGD:13702290 NCBI chr18:54,378,642...54,441,120
Ensembl chr18:54,378,784...54,438,994 		JBrowse link
G Ctbp2 C-terminal binding protein 2 is_active_in ISO (PMID:22745816) RGD PMID:22745816 NCBI chr 1:187,782,064...187,918,115
Ensembl chr 1:187,782,682...187,920,222 		JBrowse link
G Erc1 ELKS/RAB6-interacting/CAST family member 1 is_active_in ISO (PMID:32521280) RGD PMID:32521280 NCBI chr 4:152,763,664...153,055,724
Ensembl chr 4:152,767,419...153,055,639 		JBrowse link
G Fbxo45 F-box protein 45 located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:19996097)		 Ensembl
RGD		 PMID:19996097 GO_REF:0000107 NCBI chr11:68,551,430...68,567,053
Ensembl chr11:68,551,122...68,566,800 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 is_active_in ISO (PMID:19193898) RGD PMID:19193898 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Fus Fus RNA binding protein is_active_in ISO
IDA		 (PMID:34021139)
PMID:26834559		 RGD PMID:34021139 PMID:26834559 RGD:405650265 NCBI chr 1:182,576,479...182,590,417
Ensembl chr 1:182,576,545...182,590,414 		JBrowse link
G Gda guanine deaminase is_active_in IMP
IDA		 PMID:10595517 SynGO PMID:10595517 PMID:10595517 RGD:405650272, RGD:405650272 NCBI chr 1:218,903,045...218,982,360
Ensembl chr 1:218,906,815...218,982,416 		JBrowse link
G Gdi1 GDP dissociation inhibitor 1 is_active_in IDA PMID:20926670 SynGO PMID:20926670 RGD:13432355 NCBI chr  X:152,087,611...152,094,274
Ensembl chr  X:152,087,444...152,094,272 		JBrowse link
G Hap1 huntingtin-associated protein 1 is_active_in IDA PMID:9742138 SynGO PMID:9742138 RGD:13702459 NCBI chr10:85,277,890...85,286,126
Ensembl chr10:85,277,890...85,286,126 		JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B is_active_in ISO (PMID:21471000) RGD PMID:21471000 NCBI chr10:35,857,040...35,862,935
Ensembl chr10:35,857,041...35,863,344 		JBrowse link
G Htt huntingtin located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:7748555)		 Ensembl
RGD		 PMID:7748555 GO_REF:0000107 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 is_active_in ISO
IEP
IDA		 (PMID:17341485)
PMID:18445495		 RGD PMID:17341485 PMID:18445495 PMID:18445495 RGD:13462049, RGD:13462049 NCBI chr 7:122,826,696...122,987,711
Ensembl chr 7:122,826,696...122,987,703 		JBrowse link
G Marcks myristoylated alanine rich protein kinase C substrate is_active_in EXP
IDA		 PMID:2332803 SynGO PMID:2332803 PMID:2332803 RGD:9685308, RGD:9685308 NCBI chr20:40,685,315...40,691,012
Ensembl chr20:40,685,315...40,691,012 		JBrowse link
G Marcksl1 MARCKS-like 1 is_active_in IDA
IEP		 PMID:8557647 SynGO PMID:8557647 PMID:8557647 RGD:13702350, RGD:13702350 NCBI chr 5:141,851,491...141,853,814
Ensembl chr 5:141,850,110...141,853,817 		JBrowse link
G Ncs1 neuronal calcium sensor 1 is_active_in IDA PMID:11910115 SynGO PMID:11910115 RGD:13702284 NCBI chr 3:14,523,220...14,568,829
Ensembl chr 3:14,523,220...14,568,829 		JBrowse link
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase is_active_in IDA PMID:12618343 SynGO PMID:12618343 RGD:155230725 NCBI chr  X:66,771,278...66,816,148
Ensembl chr  X:66,771,349...66,816,146 		JBrowse link
G Pias1 protein inhibitor of activated STAT, 1 is_active_in ISO (PMID:34459572) RGD PMID:34459572 NCBI chr 8:63,338,150...63,451,670
Ensembl chr 8:63,338,150...63,438,905 		JBrowse link
G Pias3 protein inhibitor of activated STAT, 3 is_active_in
located_in		 ISO
IEA		 (PMID:34459572)
GO_REF:0000107		 RGD
Ensembl		 PMID:34459572 GO_REF:0000107 NCBI chr 2:184,232,546...184,241,455
Ensembl chr 2:184,232,571...184,241,480 		JBrowse link
G Pnkd PNKD metallo-beta-lactamase domain containing is_active_in ISO (PMID:25730884) RGD PMID:25730884 NCBI chr 9:75,868,620...75,937,126
Ensembl chr 9:75,867,468...75,937,124 		JBrowse link
G Ppfia2 PTPRF interacting protein alpha 2 is_active_in ISO (PMID:29439199) RGD PMID:29439199 NCBI chr 7:41,765,716...42,240,104
Ensembl chr 7:41,765,575...42,239,599 		JBrowse link
G Ppp3cc protein phosphatase 3 catalytic subunit gamma is_active_in ISO (PMID:26627835) RGD PMID:26627835 NCBI chr15:45,289,917...45,362,012
Ensembl chr15:45,290,373...45,361,832 		JBrowse link
G Ppt1 palmitoyl-protein thioesterase 1 is_active_in ISO (PMID:35358180) RGD PMID:35358180 NCBI chr 5:135,121,164...135,142,048
Ensembl chr 5:135,121,163...135,142,048 		JBrowse link
G Prkca protein kinase C, alpha is_active_in ISO (PMID:21658591) RGD PMID:21658591 NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012 		JBrowse link
G Prkcb protein kinase C, beta located_in
is_active_in		 IEA
ISO		 GO_REF:0000107
(PMID:21658591)		 Ensembl
RGD		 PMID:21658591 GO_REF:0000107 NCBI chr 1:176,832,173...177,163,539
Ensembl chr 1:176,832,226...177,163,536 		JBrowse link
G Prkce protein kinase C, epsilon is_active_in IDA PMID:8481800 SynGO PMID:8481800 RGD:13702341 NCBI chr 6:7,965,048...8,451,966
Ensembl chr 6:7,965,048...8,451,719 		JBrowse link
G Prkcg protein kinase C, gamma is_active_in ISO (PMID:24794094) RGD PMID:24794094 NCBI chr 1:65,832,851...65,860,676
Ensembl chr 1:65,832,855...65,859,384 		JBrowse link
G Rabep1 rabaptin, RAB GTPase binding effector protein 1 is_active_in IDA
IEP		 PMID:9742146 SynGO PMID:9742146 PMID:9742146 RGD:155230775, RGD:155230775 NCBI chr10:55,566,156...55,667,595
Ensembl chr10:55,566,185...55,665,973 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 is_active_in
located_in		 ISO
IEA		 (PMID:30075745)
GO_REF:0000107		 RGD
Ensembl		 PMID:30075745 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408 		JBrowse link
G Senp1 SUMO specific peptidase 1 is_active_in ISO (PMID:33113832) RGD PMID:33113832 NCBI chr 7:129,163,173...129,226,766
Ensembl chr 7:129,165,774...129,221,598 		JBrowse link
G Senp5 SUMO specific peptidase 5 is_active_in ISO (PMID:29277914) RGD PMID:29277914 NCBI chr11:68,784,699...68,819,569
Ensembl chr11:68,784,957...68,819,562 		JBrowse link
G Senp6 SUMO specific peptidase 6 is_active_in ISO (PMID:33113832) RGD PMID:33113832 NCBI chr 8:80,988,675...81,071,606
Ensembl chr 8:80,989,052...81,067,170 		JBrowse link
G Senp7 SUMO specific peptidase 7 is_active_in
located_in		 ISO
IEA		 (PMID:33113832)
GO_REF:0000107		 RGD
Ensembl		 PMID:33113832 GO_REF:0000107 NCBI chr11:44,423,733...44,584,129
Ensembl chr11:44,423,735...44,564,711 		JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 is_active_in ISO (PMID:23785143) RGD PMID:23785143 NCBI chr 5:99,653,189...99,827,500
Ensembl chr 5:99,653,152...100,113,843 		JBrowse link
G Sncb synuclein, beta is_active_in IDA PMID:7877458 SynGO PMID:7877458 RGD:13702277 NCBI chr17:9,846,802...9,855,013
Ensembl chr17:9,846,802...9,855,012 		JBrowse link
G Stxbp1 syntaxin binding protein 1 is_active_in ISO (PMID:24590174) RGD PMID:24590174 NCBI chr 3:16,076,725...16,138,431
Ensembl chr 3:16,076,391...16,138,369 		JBrowse link
G Stxbp5 syntaxin binding protein 5 is_active_in IDA
IEP		 PMID:9620695 SynGO PMID:9620695 PMID:9620695 RGD:1299498, RGD:1299498 NCBI chr 1:4,182,489...4,335,290
Ensembl chr 1:4,185,529...4,335,101 		JBrowse link
G Sumo1 small ubiquitin-like modifier 1 is_active_in ISO (PMID:31749687) RGD PMID:31749687 NCBI chr 9:61,078,790...61,108,697
Ensembl chr 9:61,077,435...61,108,761 		JBrowse link
G Sumo2 small ubiquitin-like modifier 2 is_active_in ISO (PMID:31749687) RGD PMID:31749687 NCBI chr10:100,771,941...100,784,503
Ensembl chr10:100,686,797...100,784,513
Ensembl chr 5:100,686,797...100,784,513 		JBrowse link
G Sumo3 small ubiquitin-like modifier 3 is_active_in ISO (PMID:31749687) RGD PMID:31749687 NCBI chr20:11,010,140...11,020,850
Ensembl chr20:11,007,148...11,020,877
Ensembl chr20:11,007,148...11,020,877 		JBrowse link
G Syt1 synaptotagmin 1 is_active_in IDA PMID:28686803 SynGO PMID:28686803 RGD:405650245 NCBI chr 7:43,813,204...44,358,020
Ensembl chr 7:43,815,785...44,357,803 		JBrowse link
G Tnk2 tyrosine kinase, non-receptor, 2 is_active_in ISO (PMID:16052498) RGD PMID:16052498 NCBI chr11:68,114,725...68,154,254
Ensembl chr11:68,114,726...68,154,009 		JBrowse link
G Trim9 tripartite motif-containing 9 is_active_in IDA
IEP		 PMID:11524423 SynGO PMID:11524423 PMID:11524423 RGD:631246, RGD:631246 NCBI chr 6:88,756,824...88,856,588
Ensembl chr 6:88,757,303...88,856,542 		JBrowse link
G Ube2i ubiquitin-conjugating enzyme E2I is_active_in ISO (PMID:31749687) RGD PMID:31749687 NCBI chr10:14,277,749...14,294,681
Ensembl chr10:69,701,618...69,702,443
Ensembl chr10:69,701,618...69,702,443 		JBrowse link
G Usp14 ubiquitin specific peptidase 14 is_active_in ISO (PMID:12368914) RGD PMID:12368914 NCBI chr18:1,018,111...1,057,727
Ensembl chr18:1,019,400...1,057,519 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      presynapse 895
        presynaptic cytosol 51
Path 2
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      intracellular anatomical structure 15547
        cytoplasm 12254
          cytosol 4507
            cytosolic region 75
              presynaptic cytosol 51
paths to the root