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ONTOLOGY REPORT - ANNOTATIONS

Term:synapse pruning
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Accession:GO:0098883 term browser browse the term
Definition:A cellular process that results in the controlled breakdown of synapse. After it starts the process is continuous until the synapse has disappeared.
Synonyms:exact_synonym: synapse clearance;   synapse disassembly;   synapse elimination;   synapse removal


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synapse pruning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1QA complement C1q A chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:80,586,259...80,589,213
Ensembl chr 6:80,586,280...80,589,204 		JBrowse link
G C1QB complement C1q B chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:80,601,680...80,606,076
Ensembl chr 6:80,601,665...80,607,471 		JBrowse link
G C1QC complement C1q C chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:80,592,591...80,597,464
Ensembl chr 6:80,592,473...80,597,452 		JBrowse link
G CX3CR1 C-X3-C motif chemokine receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:23,944,386...23,957,567
Ensembl chr13:23,944,369...23,957,486 		JBrowse link
G EPHA4 EPH receptor A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:123,350,867...123,501,872
Ensembl chr15:123,352,816...123,503,126 		JBrowse link
complement-mediated synapse pruning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1QA complement C1q A chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:80,586,259...80,589,213
Ensembl chr 6:80,586,280...80,589,204 		JBrowse link
G C3 complement C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:72,431,470...72,471,622
Ensembl chr 2:72,431,212...72,472,228 		JBrowse link
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:36,465,921...36,471,509
Ensembl chr 7:36,465,324...36,471,516 		JBrowse link
excitatory synapse pruning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:36,465,921...36,471,509
Ensembl chr 7:36,465,324...36,471,516 		JBrowse link
positive regulation of synapse pruning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TREM2 triggering receptor expressed on myeloid cells 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:36,465,921...36,471,509
Ensembl chr 7:36,465,324...36,471,516 		JBrowse link
regulation of excitatory synapse pruning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KCNK13 potassium two pore domain channel subfamily K member 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:111,866,471...111,981,304
Ensembl chr 7:111,867,546...111,980,663 		JBrowse link
regulation of synapse pruning term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRB3 adhesion G protein-coupled receptor B3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:48,885,885...49,619,783
Ensembl chr 1:48,886,491...49,619,769 		JBrowse link
G C1QL1 complement C1q like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:18,410,191...18,416,758
Ensembl chr12:18,409,992...18,417,759 		JBrowse link
G CD47 CD47 molecule involved_in ISO (PMID:30308165) SynGO PMID:30308165 NCBI chr13:151,427,933...151,488,064
Ensembl chr13:151,429,288...151,488,544 		JBrowse link
G CDK5 cyclin dependent kinase 5 involved_in ISO PMID:17143272 SynGO PMID:17143272 RGD:8554385 NCBI chr18:6,166,914...6,171,157 JBrowse link
G EPHA4 EPH receptor A4 involved_in ISO PMID:17143272 SynGO PMID:17143272 RGD:8554385 NCBI chr15:123,350,867...123,501,872
Ensembl chr15:123,352,816...123,503,126 		JBrowse link
G ITGB1 integrin subunit beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:56,078,393...56,130,608
Ensembl chr10:56,078,396...56,173,326 		JBrowse link
G NGEF neuronal guanine nucleotide exchange factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:133,332,715...133,460,161
Ensembl chr15:133,332,718...133,460,166 		JBrowse link
G PLXNC1 plexin C1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:88,900,238...89,055,837
Ensembl chr 5:88,900,234...89,055,924 		JBrowse link
G SARM1 sterile alpha and TIR motif containing 1 involved_in ISO (PMID:22678360) SynGO PMID:22678360 NCBI chr12:44,654,364...44,676,942
Ensembl chr12:44,655,811...44,676,945 		JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:90,051,994...90,080,701
Ensembl chr 4:90,051,277...90,080,635 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18944
    cellular process 18487
      cellular component organization or biogenesis 7420
        cellular component organization 7214
          cell junction organization 956
            synapse organization 687
              synapse pruning 17
                complement-mediated synapse pruning 3
                excitatory synapse pruning + 2
                negative regulation of synapse pruning + 0
                positive regulation of synapse pruning 1
                regulation of synapse pruning + 12
paths to the root