Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:sequence-specific single stranded DNA binding
go back to main search page
Accession:GO:0098847 term browser browse the term
Definition:Binding to single-stranded DNA of a specific nucleotide composition.


show annotations for term's descendants           Sort by:
sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSF1 heat shock transcription factor 1 enables ISO
IEA		 RGD
Ensembl		 PMID:21512157 GO_REF:0000107 RGD:10402944 NCBI chr 8:144,291,604...144,314,720
Ensembl chr 8:144,291,591...144,314,720 		JBrowse link
G PCBP1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 2:70,087,477...70,089,203
Ensembl chr 2:70,087,477...70,089,203 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NABP2 nucleic acid binding protein 2 NOT|enables IDA (PMID:25589350) BHF-UCL PMID:25589350 NCBI chr12:56,222,015...56,229,854
Ensembl chr12:56,222,015...56,229,854 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTC1 CST telomere replication complex component 1 enables IDA (PMID:22763445) BHF-UCL PMID:22763445 NCBI chr17:8,224,815...8,248,056
Ensembl chr17:8,224,815...8,248,058 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 enables IDA (PMID:23935072) BHF-UCL PMID:23935072 NCBI chr12:54,280,726...54,287,087
Ensembl chr12:54,280,193...54,287,088 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISS BHF-UCL GO_REF:0000024 NCBI chr 7:26,189,927...26,200,746
Ensembl chr 7:26,171,151...26,201,529 		JBrowse link
G NABP2 nucleic acid binding protein 2 enables IDA (PMID:25589350) BHF-UCL PMID:25589350 NCBI chr12:56,222,015...56,229,854
Ensembl chr12:56,222,015...56,229,854 		JBrowse link
G POT1 protection of telomeres 1 enables IDA
IBA		 (PMID:17237768), (PMID:21852327), (PMID:22763445) BHF-UCL
GO_Central		 PMID:17237768 PMID:21852327 PMID:22763445 GO_REF:0000033 NCBI chr 7:124,822,386...124,929,825
Ensembl chr 7:124,822,386...124,929,983 		JBrowse link
G RPA1 replication protein A1 enables IMP
IDA		 (PMID:26041456)
(PMID:16973897), (PMID:24747047)		 BHF-UCL PMID:16973897 PMID:24747047 PMID:26041456 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082 		JBrowse link
G RPA2 replication protein A2 enables IDA (PMID:24747047) BHF-UCL PMID:24747047 NCBI chr 1:27,891,524...27,914,797
Ensembl chr 1:27,891,524...27,914,746 		JBrowse link
G TERF1 telomeric repeat binding factor 1 enables IDA (PMID:17694070) BHF-UCL PMID:17694070 NCBI chr 8:73,008,864...73,048,123
Ensembl chr 8:73,008,856...73,048,123 		JBrowse link
G TERF2 telomeric repeat binding factor 2 enables IDA
IBA		 (PMID:17694070) BHF-UCL
GO_Central		 PMID:17694070 GO_REF:0000033 NCBI chr16:69,355,567...69,386,007
Ensembl chr16:69,355,567...69,408,571 		JBrowse link
G TERF2IP TERF2 interacting protein enables IDA (PMID:17694070) BHF-UCL PMID:17694070 NCBI chr16:75,647,773...75,657,432
Ensembl chr16:75,647,773...75,761,872 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IDA
IBA		 (PMID:15659580) HGNC-UCL
GO_Central		 PMID:15659580 GO_REF:0000033 NCBI chr 7:26,189,927...26,200,746
Ensembl chr 7:26,171,151...26,201,529 		JBrowse link
G POT1 protection of telomeres 1 enables IMP
IEA
IDA		 (PMID:12768206)
(PMID:15632080), (PMID:17237767)		 UniProt
InterPro
BHF-UCL		 PMID:12768206 PMID:15632080 PMID:17237767 GO_REF:0000002 NCBI chr 7:124,822,386...124,929,825
Ensembl chr 7:124,822,386...124,929,983 		JBrowse link
G RAD50 RAD50 double strand break repair protein enables IBA GO_Central GO_REF:0000033 NCBI chr 5:132,556,977...132,646,349
Ensembl chr 5:132,556,019...132,646,349 		JBrowse link
G RPA1 replication protein A1 enables IBA GO_Central GO_REF:0000033 NCBI chr17:1,830,005...1,900,082
Ensembl chr17:1,829,702...1,900,082 		JBrowse link
G STN1 STN1 subunit of CST complex enables IDA
IEA		 (PMID:19648609) UniProt
InterPro		 PMID:19648609 GO_REF:0000002 GO_REF:0000104 NCBI chr10:103,877,569...103,918,184
Ensembl chr10:103,856,806...103,918,332 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 19683
    binding 18143
      nucleic acid binding 4752
        DNA binding 2656
          sequence-specific DNA binding 1698
            sequence-specific single stranded DNA binding 14
              single-stranded telomeric DNA binding + 12
paths to the root