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ONTOLOGY REPORT - ANNOTATIONS

Term:sequence-specific single stranded DNA binding
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Accession:GO:0098847 term browser browse the term
Definition:Binding to single-stranded DNA of a specific nucleotide composition.


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sequence-specific single stranded DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HSF1 heat shock transcription factor 1 ISO RGD PMID:21512157 RGD:10402944 NCBI chr 8:141,055,310...141,078,360
Ensembl chr 8:144,062,137...144,067,866 		JBrowse link
G PCBP1 poly(rC) binding protein 1 enables IEA Ensembl GO_REF:0000107 NCBI chr2A:70,144,217...70,145,938
Ensembl chr2A:71,258,331...71,261,658 		JBrowse link
C-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NABP2 nucleic acid binding protein 2 NOT|enables ISO (PMID:25589350) BHF-UCL PMID:25589350 NCBI chr12:32,685,521...32,693,318
Ensembl chr12:32,937,017...32,944,754 		JBrowse link
G-rich strand telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTC1 CST telomere replication complex component 1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:43,410,385...43,433,784
Ensembl chr17:48,142,864...48,165,537 		JBrowse link
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 enables ISO (PMID:23935072) BHF-UCL PMID:23935072 NCBI chr12:34,456,900...34,463,317
Ensembl chr12:35,184,943...35,188,443 		JBrowse link
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables ISO PMID:23184978 BHF-UCL PMID:23184978 RGD:11567256 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985 		JBrowse link
G LOC100984603 telomeric repeat-binding factor 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr  X:72,829,188...72,893,727 JBrowse link
G LOC100986897 telomeric repeat-binding factor 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr21:505,145...506,691 JBrowse link
G LOC103783346 telomeric repeat-binding factor 1-like enables IEA TreeGrafter GO_REF:0000118 NCBI chr11:58,446,938...58,448,548 JBrowse link
G NABP2 nucleic acid binding protein 2 enables IEA Ensembl GO_REF:0000107 NCBI chr12:32,685,521...32,693,318
Ensembl chr12:32,937,017...32,944,754 		JBrowse link
G POT1 protection of telomeres 1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558 		JBrowse link
G RPA1 replication protein A1 enables IEA Ensembl GO_REF:0000107 NCBI chr17:1,813,610...1,886,093
Ensembl chr17:1,705,380...1,775,596 		JBrowse link
G RPA2 replication protein A2 enables IEA Ensembl GO_REF:0000107 NCBI chr 1:27,151,784...27,175,110
Ensembl chr 1:28,191,731...28,214,666 		JBrowse link
G TERF1 telomeric repeat binding factor 1 enables IEA TreeGrafter GO_REF:0000118 NCBI chr 8:69,545,115...69,583,997 JBrowse link
G TERF2 telomeric repeat binding factor 2 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:49,729,906...49,763,002
Ensembl chr16:69,116,539...69,148,423 		JBrowse link
G TERF2IP TERF2 interacting protein enables IEA Ensembl GO_REF:0000107 NCBI chr16:56,216,920...56,226,612
Ensembl chr16:75,565,184...75,573,882 		JBrowse link
single-stranded telomeric DNA binding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 enables IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:26,835,881...26,846,578
Ensembl chr 7:26,439,443...26,449,985 		JBrowse link
G POT1 protection of telomeres 1 enables IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr 7:116,807,913...116,926,998
Ensembl chr 7:129,487,571...129,605,558 		JBrowse link
G RAD50 RAD50 double strand break repair protein enables IEA TreeGrafter GO_REF:0000118 NCBI chr 5:127,972,630...128,059,911
Ensembl chr 5:134,134,495...134,222,261 		JBrowse link
G STN1 STN1 subunit of CST complex enables IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 NCBI chr10:100,456,589...100,518,010
Ensembl chr10:103,942,422...103,977,847 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 17700
    binding 16297
      nucleic acid binding 3379
        DNA binding 2196
          sequence-specific DNA binding 1533
            sequence-specific single stranded DNA binding 17
              single-stranded telomeric DNA binding + 15
paths to the root