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ONTOLOGY REPORT - ANNOTATIONS

Term:presynaptic endosome
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Accession:GO:0098830 term browser browse the term
Definition:An endosome present in the presynapse that fuses with endocytic vesicles arising in the presynaptic endocytic zone. This organelle is believed to be involved in regeneration of synaptic vesicles.
Comment:As of 2015, there is still controversy over the nature of presynaptic endosomes and their relationship to regular endosomes. See Jahne et al., 2015 (PMID:25939282) for details.


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presynaptic endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3d1 adaptor related protein complex 3 subunit delta 1 is_active_in IBA
ISO		 GO_REF:0000033
(PMID:19144828)		 GO_Central
RGD		 PMID:19144828 GO_REF:0000033 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643 		JBrowse link
G Ctsd cathepsin D is_active_in IDA PMID:31340140 SynGO PMID:31340140 RGD:155230699 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488 		JBrowse link
G Eea1 early endosome antigen 1 is_active_in IDA
IMP		 PMID:31074746 SynGO PMID:31074746 PMID:31074746 RGD:41408338, RGD:41408338 NCBI chr 7:30,554,686...30,722,186
Ensembl chr 7:30,554,552...30,718,487 		JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 is_active_in
located_in		 ISO
IEA		 (PMID:35318705)
GO_REF:0000107		 RGD
Ensembl		 PMID:35318705 GO_REF:0000107 NCBI chr18:21,845,282...21,934,387
Ensembl chr18:21,845,295...21,929,048 		JBrowse link
G Rab11a RAB11a, member RAS oncogene family is_active_in IMP
IDA
EXP		 PMID:30301801 SynGO PMID:30301801 PMID:30301801 PMID:30301801 RGD:405650222, RGD:405650222, RGD:405650222 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family is_active_in IDA
IMP		 PMID:31074746 SynGO PMID:31074746 PMID:31074746 RGD:41408338, RGD:41408338 NCBI chr 9:6,483,906...6,512,877
Ensembl chr 9:6,484,469...6,512,873 		JBrowse link
G Rab5al1 Rab5a, member RAS oncogene family-like 1 is_active_in IDA
IMP		 PMID:31074746 SynGO PMID:31074746 PMID:31074746 RGD:41408338, RGD:41408338 NCBI chr14:68,332,360...68,334,470
Ensembl chr14:68,332,558...68,333,205 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family is_active_in IDA
NAS
IMP		 PMID:29950309
PMID:31074746		 SynGO PMID:29950309 PMID:31074746 PMID:31074746 PMID:31074746 RGD:405650288, RGD:41408338, RGD:41408338, RGD:41408338 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rabgef1 RAB guanine nucleotide exchange factor 1 is_active_in IDA
IMP		 PMID:31074746 SynGO PMID:31074746 PMID:31074746 RGD:41408338, RGD:41408338 NCBI chr12:26,459,190...26,503,790
Ensembl chr12:26,460,175...26,503,744 		JBrowse link
G Snx4 sorting nexin 4 is_active_in ISO (PMID:33106523) RGD PMID:33106523 NCBI chr11:67,460,872...67,518,143
Ensembl chr11:67,460,870...67,518,174 		JBrowse link
G Vac14 VAC14 component of PIKFYVE complex is_active_in ISO (PMID:22842785) RGD PMID:22842785 NCBI chr19:38,590,569...38,691,911
Ensembl chr19:38,590,569...38,691,909 		JBrowse link
presynaptic endosome membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vamp4 vesicle-associated membrane protein 4 is_active_in ISO (PMID:22406549) RGD PMID:22406549 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686 		JBrowse link
G Vti1b vesicle transport through interaction with t-SNAREs 1B is_active_in IDA
IEP
NAS		 PMID:10908612 SynGO PMID:10908612 PMID:10908612 PMID:10908612 RGD:634537, RGD:634537, RGD:634537 NCBI chr 6:97,957,700...97,976,491
Ensembl chr 6:97,961,346...97,976,465 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      presynapse 895
        presynaptic endosome 13
          presynaptic endosome membrane + 2
Path 2
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      organelle 14240
        membrane-bounded organelle 12805
          intracellular membrane-bounded organelle 12253
            intracellular vesicle 2073
              cytoplasmic vesicle 2064
                endosome 951
                  presynaptic endosome 13
                    presynaptic endosome membrane + 2
paths to the root