ONTOLOGY REPORT - ANNOTATIONS
Term: detection of external biotic stimulus
Accession: GO:0098581
browse the term
Definition: The series of events in which an external biotic stimulus is detected and converted into a molecular signal. An external biotic stimulus is defined as one caused or produced by a living organism other than the one being stimulated.
Synonyms: exact_synonym: detection of exogenous biotic stimulus
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Ssc5d
scavenger receptor cysteine rich family member with 5 domains
involved_in
IBA ISO
GO_REF:0000033 (PMID:21217009)
GO_Central RGD
PMID:21217009
GO_REF:0000033
NCBI chr 1:77,920,781...77,939,284
Ensembl chr 1:68,891,949...68,909,743
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Clec4m
C-type lectin domain family 4 member M
acts_upstream_of_or_within
ISO
(PMID:14707091)
RGD
PMID:14707091
NCBI chr12:6,713,795...6,722,414
Ensembl chr12:1,915,919...1,924,539
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Naip5
NLR family, apoptosis inhibitory protein 5
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:33,289,785...33,342,807
Ensembl chr 2:31,557,817...31,608,634
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Naip6
NLR family, apoptosis inhibitory protein 6
involved_in
IBA ISO
GO_REF:0000033 (PMID:21874021)
GO_Central RGD
PMID:21874021
GO_REF:0000033
NCBI chr 2:33,241,520...33,293,184
Ensembl chr 2:31,507,424...31,570,542
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Nlrc4
NLR family, CARD domain containing 4
involved_in
ISO IBA ISS
(PMID:15107016) (PMID:22885697) GO_REF:0000033 GO_REF:0000024
RGD GO_Central UniProt
PMID:15107016 PMID:22885697
GO_REF:0000024 GO_REF:0000033
NCBI chr 6:26,743,658...26,771,783
Ensembl chr 6:20,995,266...21,018,248
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Nod1
nucleotide-binding oligomerization domain containing 1
involved_in
ISO
(PMID:15653568)
RGD
PMID:15653568
NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:84,060,880...84,111,404
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Nod2
nucleotide-binding oligomerization domain containing 2
involved_in
ISO
(PMID:15653568)
RGD
PMID:15653568
NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
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Parg
poly (ADP-ribose) glycohydrolase
acts_upstream_of_or_within
ISO
MGI:3052740 (PMID:15282315)
RGD
PMID:15282315
NCBI chr16:7,442,696...7,550,585
Ensembl chr16:7,436,476...7,544,273
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Pglyrp1
peptidoglycan recognition protein 1
involved_in
ISO
(PMID:11461926)
RGD
PMID:11461926
NCBI chr 1:87,659,863...87,665,048
Ensembl chr 1:78,531,815...78,537,001
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Pglyrp2
peptidoglycan recognition protein 2
involved_in
ISO
(PMID:11461926)
RGD
PMID:11461926
NCBI chr 7:12,069,414...12,082,437
Ensembl chr 7:11,418,880...11,427,773
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Pglyrp3
peptidoglycan recognition protein 3
involved_in
ISO
(PMID:11461926)
RGD
PMID:11461926
NCBI chr 2:180,174,931...180,186,007
Ensembl chr 2:177,477,407...177,490,736 Ensembl chr 2:177,477,407...177,490,736
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Pglyrp4
peptidoglycan recognition protein 4
involved_in
ISO
(PMID:11461926)
RGD
PMID:11461926
NCBI chr 2:178,500,238...178,669,328
Ensembl chr 2:176,218,519...176,242,251
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Tlr2
toll-like receptor 2
acts_upstream_of_or_within
ISO
(PMID:19931471)
RGD
PMID:19931471
NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
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Tlr6
toll-like receptor 6
acts_upstream_of_or_within
ISO
(PMID:19931471)
RGD
PMID:19931471
NCBI chr14:43,715,809...43,727,019
Ensembl chr14:43,362,164...43,375,685
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Casp4
caspase 4
involved_in
ISO
(PMID:23887873), (PMID:24031018), (PMID:30589883), (PMID:38632402)
RGD
PMID:23887873 PMID:24031018 PMID:30589883 PMID:38632402
NCBI chr 8:10,883,817...10,919,978
Ensembl chr 8:2,598,876...2,635,092
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Ly96
lymphocyte antigen 96
involved_in
ISO IBA
(PMID:19252480) GO_REF:0000033
RGD GO_Central
PMID:19252480
GO_REF:0000033
NCBI chr 5:7,365,536...7,397,864
Ensembl chr 5:2,582,254...2,612,386
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Nr4a1
nuclear receptor subfamily 4, group A, member 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:37001519)
UniProt RGD
PMID:37001519
GO_REF:0000024
NCBI chr 7:134,247,153...134,268,044
Ensembl chr 7:132,374,840...132,389,297
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Scarb1
scavenger receptor class B, member 1
involved_in
ISO IEA
(PMID:12651854) GO_REF:0000107
RGD Ensembl
PMID:12651854
GO_REF:0000107
NCBI chr12:36,957,302...37,023,982
Ensembl chr12:31,296,156...31,362,647
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Tlr4
toll-like receptor 4
involved_in
ISO IEA ISS IBA
(PMID:19252480) GO_REF:0000107 GO_REF:0000024 GO_REF:0000033 (PMID:28098138)
RGD Ensembl UniProt GO_Central
PMID:19252480 PMID:28098138
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:80,145,826...80,159,628
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Trem2
triggering receptor expressed on myeloid cells 2
involved_in
ISO
(PMID:12847223)
RGD
PMID:12847223
NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170
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Trem2
triggering receptor expressed on myeloid cells 2
involved_in
ISO
(PMID:12847223)
RGD
PMID:12847223
NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170
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Lbp
lipopolysaccharide binding protein
involved_in
ISO IEA
(PMID:11528597) GO_REF:0000107
RGD Ensembl
PMID:11528597
GO_REF:0000107
NCBI chr 3:167,373,786...167,400,941
Ensembl chr 3:146,954,015...146,981,586
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Tlr9
toll-like receptor 9
involved_in
ISO
(PMID:17128265)
RGD
PMID:17128265
NCBI chr 8:115,743,407...115,747,523
Ensembl chr 8:106,864,680...106,868,796
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Clec7a
C-type lectin domain containing 7A
involved_in
ISO
(PMID:15213161)
RGD
PMID:15213161
NCBI chr 4:164,588,737...164,599,953
Ensembl chr 4:162,902,732...162,913,897
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Nod2
nucleotide-binding oligomerization domain containing 2
involved_in acts_upstream_of_or_within
ISO
(PMID:15998797) (PMID:12527755)
RGD
PMID:12527755 PMID:15998797
NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
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Trem2
triggering receptor expressed on myeloid cells 2
involved_in
ISO
(PMID:12847223)
RGD
PMID:12847223
NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170
G
Tlr1
toll-like receptor 1
acts_upstream_of_or_within
ISO
(PMID:19931471)
RGD
PMID:19931471
NCBI chr14:43,737,761...43,750,389
Ensembl chr14:43,384,932...43,397,125
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Tlr2
toll-like receptor 2
acts_upstream_of_or_within
ISO
(PMID:19931471)
RGD
PMID:19931471
NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
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Clec4a
C-type lectin domain family 4, member A
involved_in
ISO
(PMID:22041900)
RGD
PMID:22041900
NCBI chr 4:158,026,138...158,119,904
Ensembl chr 4:156,414,688...156,432,402
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Clec4m
C-type lectin domain family 4 member M
acts_upstream_of_or_within
ISO
(PMID:14707091)
RGD
PMID:14707091
NCBI chr12:6,713,795...6,722,414
Ensembl chr12:1,915,919...1,924,539
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Clec6a-ps1
C-type lectin domain family 6, member A, pseudogene 1
involved_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 4:158,225,100...158,244,722
Ensembl chr 4:156,539,408...156,558,605 Ensembl chr 4:156,539,408...156,558,605
G
Clec7a
C-type lectin domain containing 7A
acts_upstream_of_or_within involved_in
ISO
(PMID:14698225) (PMID:19136564)
RGD
PMID:14698225 PMID:19136564
NCBI chr 4:164,588,737...164,599,953
Ensembl chr 4:162,902,732...162,913,897
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