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ONTOLOGY REPORT - ANNOTATIONS


Term:detection of external biotic stimulus
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Accession:GO:0098581 term browser browse the term
Definition:The series of events in which an external biotic stimulus is detected and converted into a molecular signal. An external biotic stimulus is defined as one caused or produced by a living organism other than the one being stimulated.
Synonyms:exact_synonym: detection of exogenous biotic stimulus



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detection of bacterial lipoprotein term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssc5d scavenger receptor cysteine rich family member with 5 domains involved_in IBA
ISO
GO_REF:0000033
(PMID:21217009)
GO_Central
RGD
PMID:21217009 GO_REF:0000033 NCBI chr 1:77,920,781...77,939,284
Ensembl chr 1:68,891,949...68,909,743
JBrowse link
detection of bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (PMID:14707091) RGD PMID:14707091 NCBI chr12:6,713,795...6,722,414
Ensembl chr12:1,915,919...1,924,539
JBrowse link
G Naip5 NLR family, apoptosis inhibitory protein 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:33,289,785...33,342,807
Ensembl chr 2:31,557,817...31,608,634
JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 involved_in IBA
ISO
GO_REF:0000033
(PMID:21874021)
GO_Central
RGD
PMID:21874021 GO_REF:0000033 NCBI chr 2:33,241,520...33,293,184
Ensembl chr 2:31,507,424...31,570,542
JBrowse link
G Nlrc4 NLR family, CARD domain containing 4 involved_in ISO
IBA
ISS
(PMID:15107016)
(PMID:22885697)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:15107016 PMID:22885697 GO_REF:0000024 GO_REF:0000033 NCBI chr 6:26,743,658...26,771,783
Ensembl chr 6:20,995,266...21,018,248
JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr 4:85,391,142...85,442,281
Ensembl chr 4:84,060,880...84,111,404
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
JBrowse link
G Parg poly (ADP-ribose) glycohydrolase acts_upstream_of_or_within ISO MGI:3052740 (PMID:15282315) RGD PMID:15282315 NCBI chr16:7,442,696...7,550,585
Ensembl chr16:7,436,476...7,544,273
JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 1:87,659,863...87,665,048
Ensembl chr 1:78,531,815...78,537,001
JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 7:12,069,414...12,082,437
Ensembl chr 7:11,418,880...11,427,773
JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:180,174,931...180,186,007
Ensembl chr 2:177,477,407...177,490,736
Ensembl chr 2:177,477,407...177,490,736
JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:178,500,238...178,669,328
Ensembl chr 2:176,218,519...176,242,251
JBrowse link
detection of diacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
G Tlr6 toll-like receptor 6 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,715,809...43,727,019
Ensembl chr14:43,362,164...43,375,685
JBrowse link
detection of lipopolysaccharide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp4 caspase 4 involved_in ISO (PMID:23887873), (PMID:24031018), (PMID:30589883), (PMID:38632402) RGD PMID:23887873 PMID:24031018 PMID:30589883 PMID:38632402 NCBI chr 8:10,883,817...10,919,978
Ensembl chr 8:2,598,876...2,635,092
JBrowse link
G Ly96 lymphocyte antigen 96 involved_in ISO
IBA
(PMID:19252480)
GO_REF:0000033
RGD
GO_Central
PMID:19252480 GO_REF:0000033 NCBI chr 5:7,365,536...7,397,864
Ensembl chr 5:2,582,254...2,612,386
JBrowse link
G Nr4a1 nuclear receptor subfamily 4, group A, member 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:37001519)
UniProt
RGD
PMID:37001519 GO_REF:0000024 NCBI chr 7:134,247,153...134,268,044
Ensembl chr 7:132,374,840...132,389,297
JBrowse link
G Scarb1 scavenger receptor class B, member 1 involved_in ISO
IEA
(PMID:12651854)
GO_REF:0000107
RGD
Ensembl
PMID:12651854 GO_REF:0000107 NCBI chr12:36,957,302...37,023,982
Ensembl chr12:31,296,156...31,362,647
JBrowse link
G Tlr4 toll-like receptor 4 involved_in ISO
IEA
ISS
IBA
(PMID:19252480)
GO_REF:0000107
GO_REF:0000024
GO_REF:0000033
(PMID:28098138)
RGD
Ensembl
UniProt
GO_Central
PMID:19252480 PMID:28098138 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:80,145,826...80,159,628
JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:12847223) RGD PMID:12847223 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
detection of lipoteichoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:12847223) RGD PMID:12847223 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
detection of molecule of bacterial origin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lbp lipopolysaccharide binding protein involved_in ISO
IEA
(PMID:11528597)
GO_REF:0000107
RGD
Ensembl
PMID:11528597 GO_REF:0000107 NCBI chr 3:167,373,786...167,400,941
Ensembl chr 3:146,954,015...146,981,586
JBrowse link
G Tlr9 toll-like receptor 9 involved_in ISO (PMID:17128265) RGD PMID:17128265 NCBI chr 8:115,743,407...115,747,523
Ensembl chr 8:106,864,680...106,868,796
JBrowse link
detection of molecule of fungal origin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec7a C-type lectin domain containing 7A involved_in ISO (PMID:15213161) RGD PMID:15213161 NCBI chr 4:164,588,737...164,599,953
Ensembl chr 4:162,902,732...162,913,897
JBrowse link
detection of muramyl dipeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within
ISO (PMID:15998797)
(PMID:12527755)
RGD PMID:12527755 PMID:15998797 NCBI chr19:34,555,832...34,596,281
Ensembl chr19:18,382,439...18,417,177
JBrowse link
detection of peptidoglycan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:12847223) RGD PMID:12847223 NCBI chr 9:20,145,215...20,151,797
Ensembl chr 9:12,647,259...12,654,170
JBrowse link
detection of triacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr1 toll-like receptor 1 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,737,761...43,750,389
Ensembl chr14:43,384,932...43,397,125
JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:171,499,189...171,504,831
Ensembl chr 2:169,197,419...169,206,630
JBrowse link
detection of yeast term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4a C-type lectin domain family 4, member A involved_in ISO (PMID:22041900) RGD PMID:22041900 NCBI chr 4:158,026,138...158,119,904
Ensembl chr 4:156,414,688...156,432,402
JBrowse link
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (PMID:14707091) RGD PMID:14707091 NCBI chr12:6,713,795...6,722,414
Ensembl chr12:1,915,919...1,924,539
JBrowse link
G Clec6a-ps1 C-type lectin domain family 6, member A, pseudogene 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:158,225,100...158,244,722
Ensembl chr 4:156,539,408...156,558,605
Ensembl chr 4:156,539,408...156,558,605
JBrowse link
G Clec7a C-type lectin domain containing 7A acts_upstream_of_or_within
involved_in
ISO (PMID:14698225)
(PMID:19136564)
RGD PMID:14698225 PMID:19136564 NCBI chr 4:164,588,737...164,599,953
Ensembl chr 4:162,902,732...162,913,897
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    response to stimulus 11014
      response to biotic stimulus 1924
        detection of biotic stimulus 37
          detection of external biotic stimulus 26
            detection of molecule of bacterial origin + 13
            detection of molecule of fungal origin 1
            detection of molecule of oomycetes origin 0
            detection of other organism + 18
paths to the root