Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasmic side of rough endoplasmic reticulum membrane
go back to main search page
Accession:GO:0098556 term browser browse the term
Definition:The side (leaflet) of the rough endoplasmic reticulum membrane that faces the cytoplasm.


show annotations for term's descendants           Sort by:
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg5 ALG5, dolichyl-phosphate beta-glucosyltransferase is_active_in ISO UniProtKB:P40350 (PMID:10359825) RGD PMID:10359825 NCBI chr 2:141,087,126...141,101,397
Ensembl chr 2:138,936,993...138,951,216 		JBrowse link
G Epm2a EPM2A glucan phosphatase, laforin located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:11001928)		 UniProt
Ensembl
RGD		 PMID:11001928 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:7,547,369...7,673,449
Ensembl chr 1:5,727,066...5,920,555 		JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 IDA gonadotropin-releasing hormone-associated peptide RGD PMID:2183089 RGD:9685146 NCBI chr15:46,147,878...46,152,086
Ensembl chr15:41,972,905...41,973,581
Ensembl chr15:41,972,905...41,973,581 		JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:168,084,487...168,097,519
Ensembl chr 5:162,804,368...162,811,128 		JBrowse link
G Mgat2 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:93,392,416...93,394,905
Ensembl chr 6:87,656,349...87,658,177 		JBrowse link
G Rpl10 ribosomal protein L10 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:157,205,850...157,208,057
Ensembl chr  X:152,054,452...152,056,761 		JBrowse link
G Rpl11 ribosomal protein L11 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:153,557,592...153,561,230
Ensembl chr 5:148,274,069...148,277,599 		JBrowse link
G Rpl23 ribosomal protein L23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr10:83,268,223...83,272,184
Ensembl chr10:82,771,538...82,775,870 		JBrowse link
G Rpl27 ribosomal protein L27 located_in ISS
ISO		 GO_REF:0000024
(PMID:24930395)		 UniProt
RGD		 PMID:24930395 GO_REF:0000024 NCBI chr10:86,875,758...86,879,457
Ensembl chr10:86,375,454...86,379,193 		JBrowse link
G Rpl29 ribosomal protein L29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:115,056,443...115,949,677
Ensembl chr 8:107,068,480...107,070,914
Ensembl chr12:107,068,480...107,070,914 		JBrowse link
G Rpl31 ribosomal protein L31 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 9:49,143,044...49,147,155
Ensembl chr 9:41,647,426...41,662,129
Ensembl chr 8:41,647,426...41,662,129 		JBrowse link
G Rpl32 ribosomal protein L32 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 4:150,536,650...150,540,214
Ensembl chr 4:148,864,044...148,867,612
Ensembl chr 3:148,864,044...148,867,612 		JBrowse link
G Rpl35 ribosomal protein L35 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 3:43,162,960...43,166,485
Ensembl chr 3:22,753,253...22,756,243 		JBrowse link
G Rpl6 ribosomal protein L6 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr12:41,008,142...41,012,756
Ensembl chr12:35,347,497...35,351,921 		JBrowse link
G Rps15 ribosomal protein S15 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 7:10,066,572...10,068,167
Ensembl chr 7:9,416,004...9,417,450
Ensembl chr 7:9,416,004...9,417,450 		JBrowse link
G Rps16 ribosomal protein S16 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:92,770,658...92,773,603
Ensembl chr 1:83,643,130...83,646,206
Ensembl chr19:83,643,130...83,646,206 		JBrowse link
G Rps17 ribosomal protein S17 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:144,705,150...144,707,736
Ensembl chr 1:135,295,919...135,298,535
Ensembl chr 8:135,295,919...135,298,535 		JBrowse link
G Rps18 ribosomal protein S18 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr20:4,933,741...4,937,423
Ensembl chr20:4,931,768...4,938,315 		JBrowse link
G Rps20 ribosomal protein S20 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:21,616,687...21,618,068
Ensembl chr 5:16,819,304...16,820,475
Ensembl chr 9:16,819,304...16,820,475
Ensembl chr 3:16,819,304...16,820,475
Ensembl chr 5:16,819,304...16,820,475 		JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 5:158,670,141...158,670,484
Ensembl chr 5:153,387,176...153,387,427 		JBrowse link
G Rps23 ribosomal protein S23 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 2:23,814,517...23,816,087
Ensembl chr 2:22,079,302...22,080,918 		JBrowse link
G Rps26 ribosomal protein S26 located_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 7:1,641,846...1,643,404
Ensembl chr  X:107,822,178...107,822,525 		JBrowse link
G Rps26l5 ribosomal protein S26 like 5 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr  X:112,618,864...112,619,204
Ensembl chr  X:107,822,178...107,822,525 		JBrowse link
G Rps28 ribosomal protein S28 located_in ISS
ISO		 GO_REF:0000024
(PMID:24930395)		 UniProt
RGD		 PMID:24930395 GO_REF:0000024 NCBI chr 7:15,309,964...15,311,333
Ensembl chr 7:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170
Ensembl chr16:14,607,801...14,609,170 		JBrowse link
G Rps29 ribosomal protein S29 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 6:93,371,293...93,372,731
Ensembl chr 6:87,635,230...87,636,636
Ensembl chr13:87,635,230...87,636,636 		JBrowse link
G Rps3 ribosomal protein S3 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 1:163,190,476...163,195,885
Ensembl chr 1:153,777,472...153,783,680 		JBrowse link
G Rpsa ribosomal protein SA located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr 8:128,728,761...128,732,736
Ensembl chr 8:119,851,225...119,855,247 		JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 located_in ISO (PMID:24930395) RGD PMID:24930395 NCBI chr16:18,952,583...18,954,780
Ensembl chr16:18,900,616...18,920,807 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21329
    cellular anatomical structure 21034
      side of membrane 823
        cytoplasmic side of membrane 226
          cytoplasmic side of endoplasmic reticulum membrane 43
            cytoplasmic side of rough endoplasmic reticulum membrane 28
Path 2
Term Annotations click to browse term
  cellular_component 21329
    cellular anatomical structure 21034
      intracellular anatomical structure 15552
        intracellular organelle 13830
          intracellular membrane-bounded organelle 12255
            endoplasmic reticulum 1894
              endoplasmic reticulum subcompartment 1114
                endoplasmic reticulum membrane 1104
                  rough endoplasmic reticulum membrane 56
                    cytoplasmic side of rough endoplasmic reticulum membrane 28
paths to the root