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ONTOLOGY REPORT - ANNOTATIONS


Term:ligand-modulated transcription factor activity
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Accession:GO:0098531 term browser browse the term
Definition:A DNA-binding transcription factor activity regulated by binding to a ligand and that modulates the transcription of specific genes and gene sets. Examples include the lac and trp repressors in E.coli and steroid hormone receptors.
Comment:For usage guidance, see comment in GO:0003700 ; DNA-binding transcription factor activity.
Synonyms:exact_synonym: direct ligand regulated sequence-specific DNA binding transcription factor activity
 narrow_synonym: ligand-activated transcription factor activity



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ligand-modulated transcription factor activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BACH1 BTB domain and CNC homolog 1 enables IEA Ensembl GO_REF:0000107 NCBI chr31:24,269,310...24,310,369
Ensembl chr31:24,269,280...24,381,454
JBrowse link
G RORA RAR related orphan receptor A enables IEA Ensembl GO_REF:0000107 NCBI chr30:25,315,974...26,026,708
Ensembl chr30:25,325,275...26,026,623
JBrowse link
G RORC RAR related orphan receptor C enables IEA Ensembl GO_REF:0000107 NCBI chr17:60,821,498...60,842,485
Ensembl chr17:60,821,981...60,842,453
JBrowse link
bile acid nuclear receptor activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR1H4 nuclear receptor subfamily 1 group H member 4 enables IEA Ensembl GO_REF:0000107 NCBI chr15:39,497,313...39,608,120
Ensembl chr15:39,536,290...39,608,116
JBrowse link
G VDR vitamin D receptor enables IEA Ensembl GO_REF:0000107 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470
JBrowse link
nuclear estrogen receptor activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ESR1 estrogen receptor 1 enables IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 1:42,081,952...42,368,544
Ensembl chr 1:42,081,969...42,368,544
JBrowse link
G ESR2 estrogen receptor 2 enables IEA Ensembl
InterPro
GO_REF:0000002 GO_REF:0000107 NCBI chr 8:38,645,917...38,715,347
Ensembl chr 8:38,645,430...38,702,691
JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 enables IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 6:15,792,072...15,796,922
Ensembl chr 6:15,792,897...15,794,051
JBrowse link
G PDE3A phosphodiesterase 3A enables IEA Ensembl GO_REF:0000107 NCBI chr27:26,555,558...26,878,624
Ensembl chr27:26,560,547...26,878,913
JBrowse link
nuclear glucocorticoid receptor activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NR3C1 nuclear receptor subfamily 3 group C member 1 enables IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107 NCBI chr 2:38,124,568...38,242,510
Ensembl chr 2:38,123,190...38,240,755
JBrowse link
nuclear receptor activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHR aryl hydrocarbon receptor contributes_to
enables
ISO
IBA
IEA
(PMID:34521881) UniProt
GO_Central
UniProt
Ensembl
PMID:34521881 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr14:31,743,704...31,793,484
Ensembl chr14:31,686,170...31,791,444
JBrowse link
G AHRR aryl hydrocarbon receptor repressor enables IBA GO_Central GO_REF:0000033 NCBI chr34:11,820,119...11,865,681
Ensembl chr34:11,820,473...11,867,821
JBrowse link
G AR androgen receptor NOT|enables ISO
IBA
IEA
ISS
(PMID:19244107) UniProt
GO_Central
Ensembl
InterPro
BHF-UCL
RGD
PMID:2341409 PMID:19244107 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 RGD:1298681 NCBI chr24:34,713,390...34,731,461
NCBI chr  X:51,969,785...52,167,450
Ensembl chr  X:51,969,785...52,151,912
JBrowse link
G ARNT aryl hydrocarbon receptor nuclear translocator enables
contributes_to
IEA
ISO
(PMID:11043581)
(PMID:34521881)
Ensembl
MGI
UniProt
PMID:11043581 PMID:34521881 GO_REF:0000107 Ensembl chr17:59,941,353...60,010,867
Ensembl chr17:59,941,353...60,010,867
JBrowse link
G ESR1 estrogen receptor 1 enables IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 1:42,081,952...42,368,544
Ensembl chr 1:42,081,969...42,368,544
JBrowse link
G ESR2 estrogen receptor 2 enables IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 8:38,645,917...38,715,347
Ensembl chr 8:38,645,430...38,702,691
JBrowse link
G ESRRA estrogen related receptor alpha enables IBA GO_Central GO_REF:0000033 NCBI chr18:52,755,547...52,762,938
Ensembl chr18:52,756,344...52,763,355
JBrowse link
G ESRRB estrogen related receptor beta enables IBA GO_Central GO_REF:0000033 NCBI chr 8:49,253,877...49,424,148
Ensembl chr 8:49,253,332...49,421,332
JBrowse link
G ESRRG estrogen related receptor gamma enables IBA GO_Central GO_REF:0000033 NCBI chr38:11,825,055...12,439,143
Ensembl chr38:11,823,520...12,256,028
JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha enables IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr24:31,847,864...31,908,337
Ensembl chr24:31,847,961...31,905,916
JBrowse link
G HNF4G hepatocyte nuclear factor 4 gamma enables IBA GO_Central GO_REF:0000033 NCBI chr29:23,683,380...23,801,799
Ensembl chr29:23,732,339...23,801,519
JBrowse link
G LOC607038 bile acid receptor-like enables IBA GO_Central GO_REF:0000033 NCBI chr17:52,517,654...52,537,209 JBrowse link
G NKX3-1 NK3 homeobox 1 enables IEA Ensembl GO_REF:0000107 NCBI chr25:33,815,343...33,817,465
Ensembl chr25:33,815,095...33,817,474
JBrowse link
G NR1D1 nuclear receptor subfamily 1 group D member 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 9:22,461,556...22,469,243
Ensembl chr 9:22,461,705...22,469,053
JBrowse link
G NR1D2 nuclear receptor subfamily 1 group D member 2 enables IBA GO_Central GO_REF:0000033 NCBI chr23:19,758,907...19,787,725
Ensembl chr23:19,762,052...19,787,614
JBrowse link
G NR1H2 nuclear receptor subfamily 1 group H member 2 enables IEA
IBA
Ensembl
GO_Central
InterPro
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:106,332,691...106,339,168
Ensembl chr 1:106,332,798...106,339,135
JBrowse link
G NR1H3 nuclear receptor subfamily 1 group H member 3 enables
contributes_to
IEA
IBA
ISO
(PMID:17107947) InterPro
GO_Central
BHF-UCL
Ensembl
PMID:17107947 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr18:42,333,173...42,346,152
Ensembl chr18:42,333,202...42,341,236
JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 enables IEA
IBA
InterPro
GO_Central
Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr15:39,497,313...39,608,120
Ensembl chr15:39,536,290...39,608,116
JBrowse link
G NR1I2 nuclear receptor subfamily 1 group I member 2 enables ISO
IBA
IEA
RGD
GO_Central
Ensembl
PMID:10967130 GO_REF:0000033 GO_REF:0000107 RGD:61490 NCBI chr33:23,444,367...23,456,405
Ensembl chr33:23,432,690...23,455,347
JBrowse link
G NR1I3 nuclear receptor subfamily 1 group I member 3 enables IEA
IBA
InterPro
GO_Central
Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr38:21,252,874...21,257,951
Ensembl chr38:21,253,089...21,258,827
JBrowse link
G NR2C1 nuclear receptor subfamily 2 group C member 1 enables IBA GO_Central GO_REF:0000033 NCBI chr15:35,003,658...35,049,812
Ensembl chr15:35,005,066...35,038,968
JBrowse link
G NR2C2 nuclear receptor subfamily 2 group C member 2 enables IBA GO_Central GO_REF:0000033 NCBI chr20:5,041,656...5,139,859
Ensembl chr20:5,052,232...5,133,721
JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 enables IBA GO_Central GO_REF:0000033 NCBI chr12:65,209,177...65,230,274
Ensembl chr12:65,209,542...65,228,998
JBrowse link
G NR2E3 nuclear receptor subfamily 2 group E member 3 enables IBA GO_Central GO_REF:0000033 NCBI chr30:35,375,181...35,382,398 JBrowse link
G NR2F1 nuclear receptor subfamily 2 group F member 1 enables IBA GO_Central GO_REF:0000033 NCBI chr 3:15,707,198...15,716,875
Ensembl chr 3:15,707,640...15,716,875
JBrowse link
G NR2F2 nuclear receptor subfamily 2 group F member 2 enables IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 3:44,135,143...44,148,836
Ensembl chr 3:44,136,463...44,148,524
JBrowse link
G NR2F6 nuclear receptor subfamily 2 group F member 6 enables IBA GO_Central GO_REF:0000033 NCBI chr20:45,490,113...45,500,606
Ensembl chr20:45,464,356...45,500,608
JBrowse link
G NR3C1 nuclear receptor subfamily 3 group C member 1 enables IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr 2:38,124,568...38,242,510
Ensembl chr 2:38,123,190...38,240,755
JBrowse link
G NR3C2 nuclear receptor subfamily 3 group C member 2 enables IBA GO_Central GO_REF:0000033 NCBI chr15:46,390,030...46,718,000
Ensembl chr15:46,390,023...46,710,131
JBrowse link
G NR4A1 nuclear receptor subfamily 4 group A member 1 enables IEA InterPro GO_REF:0000002 NCBI chr27:2,947,729...2,965,045
Ensembl chr27:2,891,053...2,955,655
JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 enables IEA InterPro GO_REF:0000002 NCBI chr36:2,546,237...2,554,559
Ensembl chr36:2,547,421...2,552,780
JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 enables IEA InterPro GO_REF:0000002 NCBI chr11:56,806,506...56,846,997
Ensembl chr11:56,812,804...56,847,689
JBrowse link
G NR5A1 nuclear receptor subfamily 5 group A member 1 enables IEA InterPro
Ensembl
GO_REF:0000002 GO_REF:0000107
G NR5A2 nuclear receptor subfamily 5 group A member 2 enables ISO
IEA
RGD
Ensembl
InterPro
PMID:8668203 GO_REF:0000002 GO_REF:0000107 RGD:68248 NCBI chr 7:2,925,915...3,062,118
Ensembl chr 7:2,927,326...3,062,348
JBrowse link
G NR6A1 nuclear receptor subfamily 6 group A member 1 enables IEA
IBA
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr 9:58,385,981...58,485,003
Ensembl chr 9:58,266,726...58,446,000
Ensembl chr 9:58,266,726...58,446,000
JBrowse link
G PGR progesterone receptor enables IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr21:447,197...552,511
Ensembl chr21:447,319...552,511
JBrowse link
G PPARA peroxisome proliferator activated receptor alpha enables ISO
IBA
ISS
IEA
RGD
GO_Central
UniProt
InterPro
PMID:12189208 PMID:12966092 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 RGD:1580224 RGD:729665 NCBI chr10:19,934,020...20,006,096
Ensembl chr10:19,934,165...20,006,146
JBrowse link
G PPARD peroxisome proliferator activated receptor delta enables ISS
IBA
IEA
UniProt
GO_Central
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr12:4,492,867...4,579,340
Ensembl chr12:4,492,672...4,579,340
JBrowse link
G PPARG peroxisome proliferator activated receptor gamma enables ISS
IBA
IEA
UniProt
GO_Central
InterPro
GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 NCBI chr20:6,134,618...6,265,481
Ensembl chr20:6,050,357...6,207,981
JBrowse link
G RARA retinoic acid receptor alpha enables IEA
IBA
Ensembl
GO_Central
InterPro
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:22,254,803...22,298,614
Ensembl chr 9:22,254,806...22,289,459
JBrowse link
G RARB retinoic acid receptor beta enables IEA InterPro GO_REF:0000002 NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652
JBrowse link
G RARG retinoic acid receptor gamma enables ISO
IEA
RGD
InterPro
PMID:11072095 GO_REF:0000002 RGD:1300463 NCBI chr27:1,958,432...1,978,471
Ensembl chr27:1,958,204...1,978,476
JBrowse link
G RORA RAR related orphan receptor A enables IEA
IBA
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr30:25,315,974...26,026,708
Ensembl chr30:25,325,275...26,026,623
JBrowse link
G RORB RAR related orphan receptor B enables IEA
IBA
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr 1:83,470,569...83,666,200
Ensembl chr 1:83,476,816...83,666,061
JBrowse link
G RORC RAR related orphan receptor C enables IEA
IBA
InterPro
GO_Central
GO_REF:0000002 GO_REF:0000033 NCBI chr17:60,821,498...60,842,485
Ensembl chr17:60,821,981...60,842,453
JBrowse link
G RXRA retinoid X receptor alpha enables
contributes_to
IEA
IBA
ISO
(PMID:17107947) Ensembl
GO_Central
BHF-UCL
PMID:17107947 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:50,525,195...50,575,720
Ensembl chr 9:50,484,567...50,573,119
JBrowse link
G RXRB retinoid X receptor beta enables ISO
IBA
IEA
RGD
GO_Central
Ensembl
PMID:1662118 GO_REF:0000033 GO_REF:0000107 RGD:729677 NCBI chr12:2,657,058...2,663,648
Ensembl chr12:2,657,792...2,663,706
JBrowse link
G RXRG retinoid X receptor gamma enables IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr38:17,867,123...17,912,328
Ensembl chr38:17,867,182...17,920,085
JBrowse link
G SF1 splicing factor 1 enables IEA InterPro GO_REF:0000002 NCBI chr18:52,380,058...52,393,833
Ensembl chr18:52,380,211...52,393,048
JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 enables IEA Ensembl GO_REF:0000107 NCBI chr 5:41,663,809...41,686,764
Ensembl chr 5:41,663,773...41,686,776
JBrowse link
G STAT3 signal transducer and activator of transcription 3 enables IEA Ensembl GO_REF:0000107 NCBI chr 9:20,539,660...20,614,631
Ensembl chr 9:20,539,697...20,612,672
JBrowse link
G THRA thyroid hormone receptor alpha enables IEA
IBA
InterPro
GO_Central
Ensembl
GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:22,469,466...22,493,445
Ensembl chr 9:22,468,594...22,493,445
JBrowse link
G THRB thyroid hormone receptor beta enables ISO
IBA
IEA
RGD
GO_Central
Ensembl
InterPro
PMID:2457590 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 RGD:729962 NCBI chr23:19,278,650...19,648,547
Ensembl chr23:19,277,493...19,660,283
JBrowse link
G TSEN2 tRNA splicing endonuclease subunit 2 enables IEA InterPro GO_REF:0000002 NCBI chr20:6,031,295...6,090,938
Ensembl chr20:6,050,357...6,207,981
JBrowse link
G VDR vitamin D receptor enables ISO
IBA
IEA
RGD
GO_Central
Ensembl
InterPro
PMID:9579411 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 RGD:70308 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470
JBrowse link
nuclear steroid receptor activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABHD2 abhydrolase domain containing 2, acylglycerol lipase enables IEA Ensembl GO_REF:0000107 NCBI chr 3:52,151,500...52,255,024
Ensembl chr 3:52,151,535...52,249,612
JBrowse link
G ESR1 estrogen receptor 1 ISO 17-beta-estradiol (E2) RGD PMID:17928626 RGD:5128669 NCBI chr 1:42,081,952...42,368,544
Ensembl chr 1:42,081,969...42,368,544
JBrowse link
G ESR2 estrogen receptor 2 enables ISO
IEA
17-beta-estradiol (E2) RGD
InterPro
PMID:17928626 GO_REF:0000002 RGD:5128669 NCBI chr 8:38,645,917...38,715,347
Ensembl chr 8:38,645,430...38,702,691
JBrowse link
G ESRRA estrogen related receptor alpha enables IEA InterPro GO_REF:0000002 NCBI chr18:52,755,547...52,762,938
Ensembl chr18:52,756,344...52,763,355
JBrowse link
G ESRRB estrogen related receptor beta enables IEA InterPro GO_REF:0000002 NCBI chr 8:49,253,877...49,424,148
Ensembl chr 8:49,253,332...49,421,332
JBrowse link
G ESRRG estrogen related receptor gamma enables IEA InterPro GO_REF:0000002 NCBI chr38:11,825,055...12,439,143
Ensembl chr38:11,823,520...12,256,028
JBrowse link
G HNF4A hepatocyte nuclear factor 4 alpha enables IEA InterPro GO_REF:0000002 NCBI chr24:31,847,864...31,908,337
Ensembl chr24:31,847,961...31,905,916
JBrowse link
G HNF4G hepatocyte nuclear factor 4 gamma enables IEA InterPro GO_REF:0000002 NCBI chr29:23,683,380...23,801,799
Ensembl chr29:23,732,339...23,801,519
JBrowse link
G NR3C2 nuclear receptor subfamily 3 group C member 2 ISO RGD PMID:17260968 RGD:1600931 NCBI chr15:46,390,030...46,718,000
Ensembl chr15:46,390,023...46,710,131
JBrowse link
G OR51E2 olfactory receptor family 51 subfamily E member 2 enables IEA Ensembl GO_REF:0000107 NCBI chr21:27,078,888...27,081,746
Ensembl chr21:27,080,476...27,081,438
JBrowse link
G OR51F23 olfactory receptor family 51 subfamily F member 23 enables IEA Ensembl GO_REF:0000107 NCBI chr21:27,089,071...27,090,339
Ensembl chr21:27,089,139...27,090,068
JBrowse link
G PAQR7 progestin and adipoQ receptor family member 7 enables IBA GO_Central GO_REF:0000033 NCBI chr 2:74,084,915...74,095,633
Ensembl chr 2:74,093,089...74,094,625
JBrowse link
G PAQR8 progestin and adipoQ receptor family member 8 enables IBA GO_Central GO_REF:0000033 NCBI chr12:19,968,950...20,059,344
Ensembl chr12:20,020,016...20,056,008
JBrowse link
G PGR progesterone receptor enables ISO
IEA
RGD
Ensembl
InterPro
UniProt
PMID:11113338 GO_REF:0000002 GO_REF:0000104 GO_REF:0000107 RGD:1601290 NCBI chr21:447,197...552,511
Ensembl chr21:447,319...552,511
JBrowse link
G PPARA peroxisome proliferator activated receptor alpha enables ISO (PMID:19955185) BHF-UCL PMID:19955185 NCBI chr10:19,934,020...20,006,096
Ensembl chr10:19,934,165...20,006,146
JBrowse link
G R3HDML R3H domain containing like enables IEA InterPro GO_REF:0000002 NCBI chr24:31,829,484...31,839,355
Ensembl chr24:31,830,246...31,839,336
JBrowse link
G RXRA retinoid X receptor alpha enables IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr 9:50,525,195...50,575,720
Ensembl chr 9:50,484,567...50,573,119
JBrowse link
G RXRB retinoid X receptor beta enables IEA InterPro GO_REF:0000002 NCBI chr12:2,657,058...2,663,648
Ensembl chr12:2,657,792...2,663,706
JBrowse link
G RXRG retinoid X receptor gamma enables IEA InterPro
UniProt
GO_REF:0000002 GO_REF:0000104 NCBI chr38:17,867,123...17,912,328
Ensembl chr38:17,867,182...17,920,085
JBrowse link
G VDR vitamin D receptor enables ISO (PMID:10678179), (PMID:12016314), (PMID:17082781) UniProt PMID:10678179 PMID:12016314 PMID:17082781 NCBI chr27:6,852,915...6,909,466
Ensembl chr27:6,852,723...6,909,470
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 21950
    transcription regulator activity 1673
      DNA-binding transcription factor activity 1196
        ligand-modulated transcription factor activity 64
          ligand-modulated transcription activator activity 0
          ligand-modulated transcription repressor activity 0
          nuclear receptor activity + 63
paths to the root