ONTOLOGY REPORT - ANNOTATIONS
Term: photoreceptor cell cilium
Accession: GO:0097733
browse the term
Definition: A specialised 9+0 non-motile cilium found in photoreceptor cells. A ciliary transition zone called 'photoreceptor connecting cilium' links the photoreceptor outer segment to the inner segment.
Synonyms: exact_synonym: photoreceptor cilium
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Atp1a4
ATPase Na+/K+ transporting subunit alpha 4
located_in
ISO
(PMID:26373354)
RGD
PMID:26373354
NCBI chr13:84,683,766...84,719,790
Ensembl chr13:84,683,768...84,719,687
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Cfap410
cilia and flagella associated protein 410
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737
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Fam161a
FAM161 centrosomal protein A
located_in
ISO
(PMID:22791751)
RGD
PMID:22791751
NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588
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Ift52
intraflagellar transport 52
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980
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Pex6
peroxisomal biogenesis factor 6
located_in
ISO ISS
(PMID:26593283) GO_REF:0000024
RGD UniProt
PMID:26593283
GO_REF:0000024
NCBI chr 9:14,258,145...14,270,335
Ensembl chr 9:14,258,145...14,270,303
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Rp1
RP1, axonemal microtubule associated
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
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Sdccag8
SHH signaling and ciliogenesis regulator SDCCAG8
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr13:88,754,521...88,979,363
Ensembl chr13:88,754,626...89,097,111
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Ush1g
USH1 protein network component sans
located_in
ISO
(PMID:31637240)
RGD
PMID:31637240
NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
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Cnga3
cyclic nucleotide gated channel subunit alpha 3
located_in
ISO
(PMID:10813773)
RGD
PMID:10813773
NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183
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Guca1a
guanylate cyclase activator 1A
located_in is_active_in
ISO IBA
(PMID:9620085) GO_REF:0000033
RGD GO_Central
PMID:9620085
GO_REF:0000033
NCBI chr 9:13,588,988...13,598,566
Ensembl chr 9:13,588,525...13,598,565
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Guca1b
guanylate cyclase activator 1B
located_in is_active_in
ISO IBA
(PMID:9620085) GO_REF:0000033
RGD GO_Central
PMID:9620085
GO_REF:0000033
NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
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Ift140
intraflagellar transport 140
located_in
ISO
(PMID:24619649)
RGD
PMID:24619649
NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
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Opn1sw
opsin 1, short wave sensitive
located_in
IEA ISO
GO_REF:0000107 (PMID:10813773)
Ensembl RGD
PMID:10813773
GO_REF:0000107
NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
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Pcare
photoreceptor cilium actin regulator
located_in
ISO
(PMID:25616964)
RGD
PMID:25616964
NCBI chr 6:23,749,700...23,758,424
Ensembl chr 6:23,749,757...23,758,169
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Prkca
protein kinase C, alpha
located_in
ISO
(PMID:10813773)
RGD
PMID:10813773
NCBI chr10:92,889,390...93,288,013
Ensembl chr10:92,894,012...93,288,012
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Rd3
RD3 regulator of GUCY2D
located_in
ISO
(PMID:21078983)
RGD
PMID:21078983
NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
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Slc24a4
solute carrier family 24 member 4
located_in
ISO
(PMID:28650316)
RGD
PMID:28650316
NCBI chr 6:121,279,590...121,419,811
Ensembl chr 6:121,280,031...121,414,949
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Tmem237
transmembrane protein 237
located_in
ISO
(PMID:20375344)
RGD
PMID:20375344
NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567
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AC131360.2
located_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
Ensembl chr18:29,185,443...29,187,845
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Adgrv1
adhesion G protein-coupled receptor V1
located_in
ISO
(PMID:17906286)
RGD
PMID:17906286
NCBI chr 2:11,331,434...11,911,713
Ensembl chr 2:11,331,442...11,911,688
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Alpk1
alpha-kinase 1
located_in
ISO
(PMID:30967659)
RGD
PMID:30967659
NCBI chr 2:216,126,939...216,247,180
Ensembl chr 2:216,128,825...216,247,157
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Arl3
ARF like GTPase 3
located_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (PMID:12417528)
UniProt Ensembl RGD
PMID:12417528
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:245,400,659...245,446,673
Ensembl chr 1:245,400,550...245,446,820
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Bbs4
Bardet-Biedl syndrome 4
located_in
ISO
(PMID:23943788)
RGD
PMID:23943788
NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
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Cep290
centrosomal protein 290
located_in
ISO
(PMID:16632484), (PMID:16682973), (PMID:23943788)
RGD
PMID:16632484 PMID:16682973 PMID:23943788
NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392
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Cetn1
centrin 1
located_in
ISO
(PMID:15347651), (PMID:30120214)
RGD
PMID:15347651 PMID:30120214
NCBI chr18:651,591...652,293
Ensembl chr18:651,591...652,293
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Cetn2
centrin 2
located_in
ISO
(PMID:15347651)
RGD
PMID:15347651
NCBI chr X:150,769,944...150,774,833
Ensembl chr X:150,769,953...150,774,919
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Cetn3
centrin 3
located_in
ISO
(PMID:15347651), (PMID:22031837), (PMID:24833722)
RGD
PMID:15347651 PMID:22031837 PMID:24833722
NCBI chr 2:12,089,025...12,101,828
Ensembl chr 2:12,089,226...12,101,828
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Cfap410
cilia and flagella associated protein 410
located_in
ISO
(PMID:26974433)
RGD
PMID:26974433
NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737
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Fam161a
FAM161 centrosomal protein A
located_in is_active_in
IDA ISO IBA IEA
PMID:22940612 (PMID:22791751), (PMID:22940612), (PMID:24833722) GO_REF:0000033 GO_REF:0000107 (PMID:22940612)
RGD GO_Central Ensembl
PMID:22791751 PMID:22940612 PMID:24833722 PMID:22940612
GO_REF:0000033 GO_REF:0000107, RGD:8553427
NCBI chr14:97,009,449...97,027,865
Ensembl chr14:97,009,491...97,028,588
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Gnat1
G protein subunit alpha transducin 1
located_in
ISO
(PMID:17881533)
RGD
PMID:17881533
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
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Ift122
intraflagellar transport 122
located_in
ISO
(PMID:19208653)
RGD
PMID:19208653
NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
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Ift140
intraflagellar transport 140
located_in
ISO
(PMID:20368623), (PMID:24619649)
RGD
PMID:20368623 PMID:24619649
NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
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Ift20
intraflagellar transport 20
located_in
ISO
(PMID:31637240) (PMID:21307337)
RGD
PMID:21307337 PMID:31637240
NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
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Ift52
intraflagellar transport 52
located_in
ISO
(PMID:31637240) (PMID:20368623)
RGD
PMID:20368623 PMID:31637240
NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980
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Ift57
intraflagellar transport 57
located_in
ISO
(PMID:31637240) (PMID:20368623)
RGD
PMID:20368623 PMID:31637240
NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812
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Ift88
intraflagellar transport 88
located_in
ISO
(PMID:19208653), (PMID:20368623)
RGD
PMID:19208653 PMID:20368623
NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
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Iqcb1
IQ motif containing B1
located_in
ISO
(PMID:15723066)
RGD
PMID:15723066
NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093
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Kiaa1549
KIAA1549 homolog
located_in
ISO
(PMID:30120214)
RGD
PMID:30120214
NCBI chr 4:66,840,674...66,968,407
Ensembl chr 4:66,760,162...66,968,436
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Kif17
kinesin family member 17
located_in
ISO
(PMID:19384852)
RGD
PMID:19384852
NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638
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Kif3a
kinesin family member 3a
located_in
ISO
(PMID:19208653)
RGD
PMID:19208653
NCBI chr10:37,725,930...37,761,183
Ensembl chr10:37,725,970...37,759,191
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Kifap3
kinesin-associated protein 3
located_in
ISO
(PMID:19384852)
RGD
PMID:19384852
NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650
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Lca5
lebercilin LCA5
located_in
ISO IDA
(PMID:21606596) PMID:17546029
RGD
PMID:21606596 PMID:17546029
RGD:14397561
NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956
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Mak
male germ cell-associated kinase
located_in
IEA ISO
GO_REF:0000107 (PMID:21148103)
Ensembl RGD
PMID:21148103
GO_REF:0000107
NCBI chr17:23,683,753...23,731,125
Ensembl chr17:23,693,878...23,730,001
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Myo7a
myosin VIIA
located_in
ISO
(PMID:10414956)
RGD
PMID:10414956
NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
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Nphp1
nephrocystin 1
located_in
ISO
(PMID:16885411)
RGD
PMID:16885411
NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
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Nphp4
nephrocystin 4
located_in
ISO
(PMID:21078623)
RGD
PMID:21078623
NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
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Pcdhb22
protocadherin beta 22
located_in
ISO
(PMID:18279309)
RGD
PMID:18279309
NCBI chr18:29,223,028...29,229,132
Ensembl chr18:29,223,149...29,225,536
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Poc5
POC5 centriolar protein
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:27,719,745...27,748,805
Ensembl chr 2:27,719,762...27,748,805
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Rp1
RP1, axonemal microtubule associated
located_in
ISO
(PMID:11767049) (PMID:11773008), (PMID:14507858)
RGD
PMID:11767049 PMID:11773008 PMID:14507858
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
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Rp1l1
RP1 like 1
located_in
ISO
(PMID:19657028)
RGD
PMID:19657028
NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316
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Rpgr
retinitis pigmentosa GTPase regulator
located_in
ISO
(PMID:10725384)
RGD
PMID:10725384
NCBI chr X:12,566,447...12,628,171
Ensembl chr X:12,566,645...12,747,882
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Rpgrip1
RPGR interacting protein 1
located_in
ISO
(PMID:25398945)
RGD
PMID:25398945
NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
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Rpgrip1l
Rpgrip1-like
is_active_in
IDA IBA
GO_REF:0000033
GO_Central RGD
PMID:17558407
GO_REF:0000033, RGD:11537356
NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
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Septin2
septin 2
located_in
ISO IEA
(PMID:23572511) GO_REF:0000107
RGD Ensembl
PMID:23572511
GO_REF:0000107
NCBI chr 9:94,018,141...94,051,386
Ensembl chr 9:94,018,208...94,051,386
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Spata7
spermatogenesis associated 7
located_in
ISS ISO
GO_REF:0000024 (PMID:25398945)
UniProt RGD
PMID:25398945
GO_REF:0000024
NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
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Sptbn5
spectrin, beta, non-erythrocytic 5
located_in
ISO
(PMID:23704327)
RGD
PMID:23704327
NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324
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Tbcc
tubulin folding cofactor C
located_in
ISO
(PMID:12417528)
RGD
PMID:12417528
NCBI chr 9:14,098,855...14,100,043
Ensembl chr 9:14,098,868...14,100,042
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Tmem237
transmembrane protein 237
located_in
ISO
(PMID:20375344)
RGD
PMID:20375344
NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567
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Topors
TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase
located_in is_active_in
ISO IBA
(PMID:21159800) GO_REF:0000033
RGD GO_Central
PMID:21159800
GO_REF:0000033
NCBI chr 5:55,388,033...55,399,937
Ensembl chr 5:55,387,632...55,399,937
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Tsga10ip
testis specific 10 interacting protein
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:202,700,576...202,714,668
Ensembl chr 1:202,700,578...202,714,798
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Ttc8
tetratricopeptide repeat domain 8
located_in
ISO
(PMID:14520415)
RGD
PMID:14520415
NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
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Ush1g
USH1 protein network component sans
located_in
ISO
(PMID:17906286)
RGD
PMID:17906286
NCBI chr10:100,559,721...100,563,590
Ensembl chr10:100,557,629...100,563,590
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Ush2a
usherin
located_in
IDA ISO IEA
(PMID:17906286), (PMID:21212183) GO_REF:0000107
RGD Ensembl
PMID:17906286 PMID:21212183 PMID:16434480
GO_REF:0000107, RGD:1600128
NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
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Wdr19
WD repeat domain 19
located_in
ISO
(PMID:19208653)
RGD
PMID:19208653
NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
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Whrn
whirlin
located_in
IDA ISO IEA
(PMID:17906286), (PMID:21212183) GO_REF:0000107
RGD Ensembl
PMID:17906286 PMID:21212183 PMID:16434480
GO_REF:0000107, RGD:1600128
NCBI chr 5:76,828,308...76,911,945
Ensembl chr 5:76,828,301...76,912,223
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AC131360.2
located_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
Ensembl chr18:29,185,443...29,187,845
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Rho
rhodopsin
located_in
ISS ISO IEA
GO_REF:0000024 (PMID:25664179) GO_REF:0000107
UniProt RGD Ensembl
PMID:25664179
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
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Sptbn5
spectrin, beta, non-erythrocytic 5
located_in
ISO
(PMID:23704327)
RGD
PMID:23704327
NCBI chr 3:107,013,783...107,054,878
Ensembl chr 3:107,013,265...107,054,324
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Ahi1
Abelson helper integration site 1
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
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Cep290
centrosomal protein 290
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392
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Nphp1
nephrocystin 1
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
G
Nphp4
nephrocystin 4
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
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Rpgr
retinitis pigmentosa GTPase regulator
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr X:12,566,447...12,628,171
Ensembl chr X:12,566,645...12,747,882
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Rpgrip1
RPGR interacting protein 1
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
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Spata7
spermatogenesis associated 7
located_in is_active_in
IEA IBA ISO
GO_REF:0000107 GO_REF:0000033 MGI:5660490 (PMID:29899041)
Ensembl GO_Central RGD
PMID:29899041
GO_REF:0000033 GO_REF:0000107
NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
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Abca4
ATP binding cassette subfamily A member 4
located_in
ISO
(PMID:23943788), (PMID:9202155)
RGD
PMID:9202155 PMID:23943788
NCBI chr 2:210,164,813...210,302,069
Ensembl chr 2:210,164,813...210,302,069
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Ahi1
Abelson helper integration site 1
located_in
ISO
(PMID:20592197)
RGD
PMID:20592197
NCBI chr 1:15,762,485...15,891,213
Ensembl chr 1:15,762,462...15,891,041
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Arr3
arrestin 3
located_in
IEA ISO
GO_REF:0000107 (PMID:10725384), (PMID:12486395)
Ensembl RGD
PMID:10725384 PMID:12486395
GO_REF:0000107
NCBI chr X:65,699,881...65,712,224
Ensembl chr X:65,698,699...65,712,153
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Bbs4
Bardet-Biedl syndrome 4
located_in
ISO
(PMID:23943788)
RGD
PMID:23943788
NCBI chr 8:59,731,912...59,765,408
Ensembl chr 8:59,731,912...59,765,607
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Bbs7
Bardet-Biedl syndrome 7
located_in
ISO
(PMID:23943788)
RGD
PMID:23943788
NCBI chr 2:119,434,760...119,474,665
Ensembl chr 2:119,434,760...119,474,396
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Bsg
basigin
located_in
ISS ISO
GO_REF:0000024 (PMID:25957687)
UniProt RGD
PMID:25957687
GO_REF:0000024
NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387
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Cacna1f
calcium voltage-gated channel subunit alpha1 F
IDA
RGD
PMID:11526344
RGD:632484
NCBI chr X:14,868,096...14,896,413
Ensembl chr X:14,868,024...14,896,413
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Cep250
centrosomal protein 250
located_in
ISO
(PMID:28005958)
RGD
PMID:28005958
NCBI chr 3:144,470,946...144,516,125
Ensembl chr 3:144,471,214...144,516,125
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Cep290
centrosomal protein 290
located_in
ISO
(PMID:23943788)
RGD
PMID:23943788
NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392
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Cerkl
CERK like autophagy regulator
located_in
ISO
(PMID:23142158)
RGD
PMID:23142158
NCBI chr 3:64,238,714...64,344,695
Ensembl chr 3:64,237,522...64,340,675
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Cfap410
cilia and flagella associated protein 410
located_in
ISO
(PMID:27548899)
RGD
PMID:27548899
NCBI chr20:10,687,863...10,694,736
Ensembl chr20:10,687,863...10,694,737
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Cib2
calcium and integrin binding family member 2
located_in
ISS ISO
GO_REF:0000024 (PMID:23023331)
UniProt RGD
PMID:23023331
GO_REF:0000024
NCBI chr 8:54,930,265...54,947,157
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Cnga1
cyclic nucleotide gated channel subunit alpha 1
located_in
ISO
(PMID:10725384), (PMID:15634774), (PMID:20592197)
RGD
PMID:10725384 PMID:15634774 PMID:20592197
NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065
G
Cnga3
cyclic nucleotide gated channel subunit alpha 3
located_in
ISO
(PMID:15634774)
RGD
PMID:15634774
NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183
G
Cngb1
cyclic nucleotide gated channel subunit beta 1
is_active_in located_in
IBA ISO
GO_REF:0000033 (PMID:22183407)
GO_Central RGD
PMID:22183407
GO_REF:0000033
NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
G
Cngb3
cyclic nucleotide gated channel subunit beta 3
is_active_in located_in
IBA ISO
GO_REF:0000033 (PMID:15634774)
GO_Central RGD
PMID:15634774
GO_REF:0000033
NCBI chr 5:32,746,988...32,995,121
Ensembl chr 5:32,746,988...32,995,121
G
Crb1
crumbs cell polarity complex component 1
located_in
ISO
(PMID:15316081)
RGD
PMID:15316081
NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
G
Gnat1
G protein subunit alpha transducin 1
located_in
IDA ISO
(PMID:18367617), (PMID:20592197), (PMID:31696965) (PMID:2534964)
RGD
PMID:2534964 PMID:18367617 PMID:20592197 PMID:31696965 PMID:11931744 PMID:10396627 More...
RGD:1599009 , RGD:6893629
NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
G
Gnat2
G protein subunit alpha transducin 2
is_active_in located_in
IDA IBA ISO
GO_REF:0000033 (PMID:2534964)
GO_Central RGD
PMID:2534964 PMID:17591908
GO_REF:0000033, RGD:2302146
NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866
G
Gnat3
G protein subunit alpha transducin 3
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:17,162,500...17,212,283
Ensembl chr 4:17,162,490...17,212,283
G
Gnb1
G protein subunit beta 1
located_in
ISO
(PMID:18367617)
RGD
PMID:18367617
NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124
G
Gngt1
G protein subunit gamma transducin 1
IDA
RGD
PMID:11931744 PMID:10396627
RGD:1599009 , RGD:6893629
NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252
G
Grk1
G protein-coupled receptor kinase 1
located_in
ISO
(PMID:22183407)
RGD
PMID:22183407
NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
G
Guca1a
guanylate cyclase activator 1A
located_in
IDA ISO
(PMID:22183407)
RGD
PMID:22183407 PMID:9620085
RGD:1599354
NCBI chr 9:13,588,988...13,598,566
Ensembl chr 9:13,588,525...13,598,565
G
Guca1b
guanylate cyclase activator 1B
located_in
IDA ISO
(PMID:22183407)
RGD
PMID:22183407 PMID:9620085
RGD:1599354
NCBI chr 9:13,599,619...13,607,455
Ensembl chr 9:13,599,619...13,607,455
G
Gucy2e
guanylate cyclase 2E
located_in
ISO
(PMID:7912093)
RGD
PMID:7912093
NCBI chr10:53,954,918...53,975,576
Ensembl chr10:53,959,010...53,974,067
G
Hnf1a
HNF1 homeobox A
located_in
ISO
MGI:96770 (PMID:10090727)
RGD
PMID:10090727
NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
G
Ift20
intraflagellar transport 20
located_in
ISO
(PMID:21307337)
RGD
PMID:21307337
NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
G
Impg1
interphotoreceptor matrix proteoglycan 1
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr 8:81,243,624...81,389,722
Ensembl chr 8:81,243,624...81,389,722
G
Impg2
interphotoreceptor matrix proteoglycan 2
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr11:44,318,836...44,418,382
Ensembl chr11:44,318,836...44,418,382
G
Inha
inhibin subunit alpha
IDA
RGD
PMID:7596220
RGD:2290440
NCBI chr 9:76,994,465...76,997,366
Ensembl chr 9:76,993,589...76,997,248
G
Iqcb1
IQ motif containing B1
located_in
ISO
(PMID:15723066)
RGD
PMID:15723066
NCBI chr11:63,905,595...63,960,141
Ensembl chr11:63,905,590...63,960,093
G
Kif17
kinesin family member 17
located_in
ISO
(PMID:19384852)
RGD
PMID:19384852
NCBI chr 5:150,482,288...150,521,471
Ensembl chr 5:150,481,578...150,519,638
G
Kifap3
kinesin-associated protein 3
located_in
ISO
(PMID:19384852)
RGD
PMID:19384852
NCBI chr13:76,127,702...76,264,654
Ensembl chr13:76,127,696...76,264,650
G
Lyar
Ly1 antibody reactive
located_in
ISS ISO IEA
GO_REF:0000024 (PMID:25735755) GO_REF:0000107
UniProt RGD Ensembl
PMID:25735755
GO_REF:0000024 GO_REF:0000107
NCBI chr14:72,576,878...72,590,854
Ensembl chr14:72,576,879...72,590,612
G
Magi2
membrane associated guanylate kinase, WW and PDZ domain containing 2
located_in
ISS ISO
GO_REF:0000024 (PMID:24608321)
UniProt RGD
PMID:24608321
GO_REF:0000024
NCBI chr 4:14,386,389...15,870,036
Ensembl chr 4:14,386,399...15,870,240
G
Mak
male germ cell-associated kinase
located_in
ISS ISO IEA
GO_REF:0000024 (PMID:21148103) GO_REF:0000107
UniProt RGD Ensembl
PMID:21148103
GO_REF:0000024 GO_REF:0000107
NCBI chr17:23,683,753...23,731,125
Ensembl chr17:23,693,878...23,730,001
G
Map1a
microtubule-associated protein 1A
located_in
ISO
(PMID:24664738)
RGD
PMID:24664738
NCBI chr 3:108,263,217...108,283,936
Ensembl chr 3:108,263,151...108,282,899
G
Map1b
microtubule-associated protein 1B
located_in
ISO
(PMID:24664738)
RGD
PMID:24664738
NCBI chr 2:30,817,261...30,910,458
Ensembl chr 2:30,817,261...30,910,317
G
Mertk
MER proto-oncogene, tyrosine kinase
IDA
RGD
PMID:11861639
RGD:1299193
NCBI chr 3:115,939,351...116,045,141
Ensembl chr 3:115,939,351...116,046,554
G
Myo3b
myosin IIIB
located_in
ISO
(PMID:19332056)
RGD
PMID:19332056
NCBI chr 3:54,820,225...55,228,518
Ensembl chr 3:54,820,251...55,227,373
G
Myo5a
myosin VA
located_in
ISO
(PMID:14978221)
RGD
PMID:14978221
NCBI chr 8:75,811,985...75,980,049
Ensembl chr 8:75,812,412...75,975,918
G
Myo7a
myosin VIIA
located_in NOT|located_in
ISO
(PMID:8842737)
RGD
PMID:8842737
NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157
G
Myrip
myosin VIIA and Rab interacting protein
located_in
IEA ISO
GO_REF:0000107 (PMID:11964381)
Ensembl RGD
PMID:11964381
GO_REF:0000107
NCBI chr 8:120,017,749...120,184,821
Ensembl chr 8:120,017,524...120,183,833
G
Nup42
nucleoporin 42
located_in
ISO
(PMID:22183407)
RGD
PMID:22183407
NCBI chr 4:10,985,554...11,002,591
Ensembl chr 4:10,985,554...11,002,591
G
Ocrl
OCRL, inositol polyphosphate-5-phosphatase
located_in
ISO IEA
(PMID:22543976) GO_REF:0000107
RGD Ensembl
PMID:22543976
GO_REF:0000107
NCBI chr X:127,089,508...127,140,362
Ensembl chr X:127,089,590...127,140,362
G
Opn1mw
opsin 1, medium wave sensitive
located_in is_active_in
IDA ISO IBA
(PMID:10725384), (PMID:12651948), (PMID:19332056), (PMID:23351594), (PMID:23386608) GO_REF:0000033
RGD GO_Central
PMID:10725384 PMID:12651948 PMID:19332056 PMID:23351594 PMID:23386608 PMID:20209167 More...
GO_REF:0000033, RGD:6893562
NCBI chr X:151,905,056...151,925,419
Ensembl chr X:151,905,096...151,925,388
G
Opn1sw
opsin 1, short wave sensitive
located_in is_active_in
IDA ISO IBA
(PMID:10725384), (PMID:12651948), (PMID:19332056), (PMID:22183407), (PMID:23351594), (PMID:23386608), (PMID:26420485) GO_REF:0000033
RGD GO_Central
PMID:10725384 PMID:12651948 PMID:19332056 PMID:22183407 PMID:23351594 PMID:23386608 PMID:26420485 PMID:20209167 More...
GO_REF:0000033, RGD:6893562
NCBI chr 4:57,977,317...57,980,457
Ensembl chr 4:57,977,313...57,980,457
G
Opn3
opsin 3
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr13:87,589,333...87,619,847
Ensembl chr13:87,589,333...87,619,847
G
Pcare
photoreceptor cilium actin regulator
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:23,749,700...23,758,424
Ensembl chr 6:23,749,757...23,758,169
G
Pcdh15
protocadherin related 15
located_in
ISO
(PMID:14570705)
RGD
PMID:14570705
NCBI chr20:13,997,094...15,496,446
Ensembl chr20:13,963,565...15,494,719
G
Pdc
phosducin
is_active_in located_in
IBA ISO
GO_REF:0000033 (PMID:18367617)
GO_Central RGD
PMID:18367617
GO_REF:0000033
NCBI chr13:62,297,281...62,371,754
Ensembl chr13:62,358,196...62,371,754
G
Pde6b
phosphodiesterase 6B
located_in
ISO
(PMID:22183407)
RGD
PMID:22183407
NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
G
Pex6
peroxisomal biogenesis factor 6
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr 9:14,258,145...14,270,335
Ensembl chr 9:14,258,145...14,270,303
G
Pip4k2a
phosphatidylinositol-5-phosphate 4-kinase type 2 alpha
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr17:81,496,669...81,668,180
Ensembl chr17:81,496,670...81,668,029
G
Prcd
photoreceptor disc component
located_in
ISO
(PMID:23672200)
RGD
PMID:23672200
NCBI chr10:101,887,192...101,907,647
G
Prom1
prominin 1
located_in
ISO
(PMID:19228982)
RGD
PMID:19228982
NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
G
Prph
peripherin
located_in
ISO
(PMID:22183407)
RGD
PMID:22183407
NCBI chr 7:130,218,149...130,222,136
Ensembl chr 7:130,218,357...130,222,136
G
Prph2
peripherin 2
located_in
ISO
(PMID:22183407), (PMID:26420485), (PMID:28053051)
RGD
PMID:22183407 PMID:26420485 PMID:28053051
NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
G
Ptgs1
prostaglandin-endoperoxide synthase 1
located_in
IEA ISO
GO_REF:0000107 (PMID:12355421)
Ensembl RGD
PMID:12355421
GO_REF:0000107
NCBI chr 3:19,584,015...19,605,589
Ensembl chr 3:19,584,015...19,605,586
G
Ptprk
protein tyrosine phosphatase, receptor type, K
located_in
ISO
(PMID:18308476)
RGD
PMID:18308476
NCBI chr 1:16,738,896...17,236,687
Ensembl chr 1:16,850,576...17,103,605
G
Rab27a
RAB27A, member RAS oncogene family
located_in
ISO
(PMID:11964381)
RGD
PMID:11964381
NCBI chr 8:73,782,730...73,836,630
Ensembl chr 8:73,782,694...73,847,829
G
Rapgef4
Rap guanine nucleotide exchange factor 4
IDA
RGD
PMID:19883736
RGD:2314691
NCBI chr 3:56,809,388...57,101,332
Ensembl chr 3:56,809,270...57,102,316
G
Rd3
RD3 regulator of GUCY2D
located_in
ISO
(PMID:29515371)
RGD
PMID:29515371
NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
G
Rho
rhodopsin
located_in is_active_in
IDA ISO IBA
(PMID:10725384), (PMID:12651948), (PMID:20592197), (PMID:21212183), (PMID:22183407), (PMID:22869374), (PMID:23351594), (PMID:23943788), (PMID:25224828), (PMID:26420485) GO_REF:0000033 (PMID:11767049), (PMID:23704327)
RGD GO_Central
PMID:10725384 PMID:11767049 PMID:12651948 PMID:20592197 PMID:21212183 PMID:22183407 PMID:22869374 PMID:23351594 PMID:23704327 PMID:23943788 PMID:25224828 PMID:26420485 PMID:8814134 More...
GO_REF:0000033, RGD:6893595
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
G
Rom1
retinal outer segment membrane protein 1
located_in
ISO
(PMID:20592197), (PMID:22183407), (PMID:26420485)
RGD
PMID:20592197 PMID:22183407 PMID:26420485
NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
G
Rp1
RP1, axonemal microtubule associated
located_in
ISO
(PMID:14507858), (PMID:15269252)
RGD
PMID:14507858 PMID:15269252
NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
G
Rp1l1
RP1 like 1
located_in
ISO
(PMID:19657028)
RGD
PMID:19657028
NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316
G
Rpgr
retinitis pigmentosa GTPase regulator
located_in
ISO
(PMID:12140192)
RGD
PMID:12140192
NCBI chr X:12,566,447...12,628,171
Ensembl chr X:12,566,645...12,747,882
G
Rrh
retinal pigment epithelium derived rhodopsin homolog
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 2:218,362,195...218,374,387
Ensembl chr 2:218,362,200...218,374,599
G
Sag
S-antigen visual arrestin
is_active_in located_in
IDA IBA ISO IEA
GO_REF:0000033 (PMID:22869374) GO_REF:0000107 (PMID:3720866)
GO_Central RGD Ensembl
PMID:3720866 PMID:22869374 PMID:10396627
GO_REF:0000033 GO_REF:0000107, RGD:6893629
NCBI chr 9:88,467,797...88,508,821
Ensembl chr 9:88,469,376...88,508,820
G
Shank2
SH3 and multiple ankyrin repeat domains 2
located_in
ISS ISO
GO_REF:0000024 (PMID:19299912)
BHF-UCL RGD
PMID:19299912
GO_REF:0000024
NCBI chr 1:199,146,210...199,590,962
Ensembl chr 1:199,169,429...199,589,394
G
Stx3
syntaxin 3
located_in
ISS ISO IEA
GO_REF:0000024 (PMID:33974130) GO_REF:0000107
UniProt RGD Ensembl
PMID:33974130
GO_REF:0000024 GO_REF:0000107
NCBI chr 1:208,617,018...208,686,240
Ensembl chr 1:208,639,115...208,685,805
G
Tmem30a
transmembrane protein 30A
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr 8:80,728,749...80,757,197
Ensembl chr 8:80,729,619...80,753,248
G
Tulp1
TUB like protein 1
located_in
ISO
(PMID:19218615)
RGD
PMID:19218615
NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073
G
Ush1c
USH1 protein network component harmonin
located_in
IDA ISO
(PMID:14578428), (PMID:17906286)
RGD
PMID:14578428 PMID:17906286 PMID:14578428
RGD:1303964
NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671
G
Vcan
versican
located_in
IEA
GO_REF:0000044
UniProt
GO_REF:0000044
NCBI chr 2:20,761,718...20,860,637
Ensembl chr 2:20,761,718...20,860,637
G
Cdhr1
cadherin-related family member 1
located_in
IEA ISO
GO_REF:0000107 (PMID:18654668)
Ensembl RGD
PMID:18654668
GO_REF:0000107
NCBI chr16:12,843,436...12,863,321
Ensembl chr16:12,843,437...12,863,396
G
Cnga1
cyclic nucleotide gated channel subunit alpha 1
located_in
IEA ISO
GO_REF:0000107 (PMID:18654668)
Ensembl RGD
PMID:18654668
GO_REF:0000107
NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065
G
Gnb1
G protein subunit beta 1
IDA
RGD
PMID:11931744
RGD:1599009
NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124
G
Gucy2e
guanylate cyclase 2E
located_in
IEA ISO IDA
GO_REF:0000107 (PMID:21598940) PMID:9153227
Ensembl RGD
PMID:21598940 PMID:9153227
GO_REF:0000107, RGD:1599625
NCBI chr10:53,954,918...53,975,576
Ensembl chr10:53,959,010...53,974,067
G
Pde6a
phosphodiesterase 6A
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr18:54,676,863...54,748,640
Ensembl chr18:54,676,863...54,748,816
G
Pde6b
phosphodiesterase 6B
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
G
Pde6g
phosphodiesterase 6G
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr10:105,721,502...105,726,150
Ensembl chr10:105,721,682...105,726,719
G
Pde6h
phosphodiesterase 6H
is_active_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 4:169,857,793...169,872,969
Ensembl chr 4:169,857,812...169,872,969
G
Phlpp2
PH domain and leucine rich repeat protein phosphatase 2
IDA
RGD
PMID:20089132
RGD:5131540
NCBI chr19:37,835,125...37,901,804
Ensembl chr19:37,835,125...37,905,513
G
Prcd
photoreceptor disc component
located_in
ISO
(PMID:27613864) (PMID:27509380), (PMID:27613864)
RGD
PMID:27509380 PMID:27613864
NCBI chr10:101,887,192...101,907,647
G
Prom1
prominin 1
located_in
ISO
(PMID:18654668)
RGD
PMID:18654668
NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
G
Prph
peripherin
located_in
ISO
(PMID:10414956)
RGD
PMID:10414956
NCBI chr 7:130,218,149...130,222,136
Ensembl chr 7:130,218,357...130,222,136
G
Rdh11
retinol dehydrogenase 11
NOT|located_in
ISO
(PMID:15790565)
RGD
PMID:15790565
NCBI chr 6:97,979,377...97,995,252
Ensembl chr 6:97,979,378...97,995,252
G
Rho
rhodopsin
located_in
IDA IEA ISO ISS
GO_REF:0000107 (PMID:19934218) GO_REF:0000024
Ensembl RGD UniProt
PMID:19934218 PMID:2209754
GO_REF:0000024 GO_REF:0000107, RGD:6893561
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
G
Rom1
retinal outer segment membrane protein 1
located_in
ISO
(PMID:18654668)
RGD
PMID:18654668
NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
G
Cep290
centrosomal protein 290
located_in
ISO
(PMID:29899041)
RGD
PMID:29899041
NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392
G
Atp1a4
ATPase Na+/K+ transporting subunit alpha 4
located_in
ISO IEA
(PMID:26373354) GO_REF:0000107
RGD Ensembl
PMID:26373354
GO_REF:0000107
NCBI chr13:84,683,766...84,719,790
Ensembl chr13:84,683,768...84,719,687
G
Cep290
centrosomal protein 290
is_active_in
ISO
MGI:2144877 (PMID:29899041)
RGD
PMID:29899041
NCBI chr 7:35,310,071...35,399,388
Ensembl chr 7:35,310,199...35,399,392
G
Cnga1
cyclic nucleotide gated channel subunit alpha 1
located_in
ISS ISO IEA
GO_REF:0000024 (PMID:22802073) GO_REF:0000107
UniProt RGD Ensembl
PMID:22802073
GO_REF:0000024 GO_REF:0000107
NCBI chr14:35,566,947...35,605,065
Ensembl chr14:35,567,125...35,605,065
G
Cngb1
cyclic nucleotide gated channel subunit beta 1
located_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr19:9,726,595...9,791,111
Ensembl chr19:9,726,595...9,791,173
G
Gucy2f
guanylate cyclase 2F
located_in
ISS ISO
GO_REF:0000024 (PMID:21078983)
UniProt RGD
PMID:21078983
GO_REF:0000024
NCBI chr X:105,710,356...105,808,183
Ensembl chr X:105,710,356...105,808,183
G
Rd3
RD3 regulator of GUCY2D
located_in
ISO
(PMID:21078983)
RGD
PMID:21078983
NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
G
Rgs9bp
regulator of G protein signaling 9 binding protein
located_in
IEA
GO_REF:0000107
Ensembl
GO_REF:0000107
NCBI chr 1:88,249,438...88,250,151
Ensembl chr 1:88,249,438...88,250,151
G
Rho
rhodopsin
located_in
IEA ISO
GO_REF:0000107 (PMID:19332056), (PMID:21444805), (PMID:23178122)
Ensembl RGD
PMID:19332056 PMID:21444805 PMID:23178122
GO_REF:0000107
NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
G
Spata7
spermatogenesis associated 7
located_in is_active_in
IEA ISO IBA
GO_REF:0000107 MGI:2384917|MGI:5660490 (PMID:29899041) GO_REF:0000033
Ensembl RGD GO_Central
PMID:29899041
GO_REF:0000033 GO_REF:0000107
NCBI chr 6:117,879,828...117,925,284
Ensembl chr 6:117,879,823...117,925,284
G
Tmem237
transmembrane protein 237
located_in
ISO
(PMID:20375344)
RGD
PMID:20375344
NCBI chr 9:60,533,348...60,569,253
Ensembl chr 9:60,535,233...60,572,567
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