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ONTOLOGY REPORT - ANNOTATIONS

Term:9+0 non-motile cilium
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Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium

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show annotations for term's descendants           Sort by:
9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap96 cilia and flagella associated protein 96 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936554:3,908,570...3,925,957
Ensembl chrNW_004936554:3,908,413...3,925,942 		JBrowse link
G CUNH1orf115 chromosome unknown C1orf115 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936650:1,575,098...1,586,515
Ensembl chrNW_004936650:1,575,083...1,586,548 		JBrowse link
G Dynll2 dynein light chain LC8-type 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:4,968,806...4,977,691
Ensembl chrNW_004936490:4,968,806...4,977,727 		JBrowse link
G Enkd1 enkurin domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:18,055,005...18,058,925
Ensembl chrNW_004936475:18,054,983...18,058,633 		JBrowse link
G Ift80 intraflagellar transport 80 located_in
is_active_in		 IEA
ISO		 (PMID:26996322) Ensembl
MGI		 PMID:26996322 GO_REF:0000107 NCBI chrNW_004936708:238,302...362,537
Ensembl chrNW_004936708:238,268...362,519 		JBrowse link
G Iftap intraflagellar transport associated protein located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936533:1,746,762...1,805,191
Ensembl chrNW_004936533:1,747,525...1,805,194 		JBrowse link
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:8,730,766...9,160,102
Ensembl chrNW_004936476:8,730,842...9,159,863 		JBrowse link
G Smo smoothened, frizzled class receptor located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021
Ensembl chrNW_004936579:5,892,542...5,917,281 		JBrowse link
G Ttll4 tubulin tyrosine ligase like 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936569:1,153,376...1,201,704
Ensembl chrNW_004936569:1,153,447...1,194,269 		JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004936488:4,723,314...4,983,926
Ensembl chrNW_004936488:4,724,909...4,983,318 		JBrowse link
G Ttll6 tubulin tyrosine ligase like 6 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:12,625,977...12,652,318
Ensembl chrNW_004936490:12,626,007...12,652,286 		JBrowse link
G Ttll7 tubulin tyrosine ligase like 7 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004936608:1,534,847...1,675,997
Ensembl chrNW_004936608:1,534,836...1,680,532 		JBrowse link
G Tulp3 TUB like protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936606:3,209,170...3,278,809
Ensembl chrNW_004936606:3,209,141...3,278,563 		JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cimip3 ciliary microtubule inner protein 3 located_in ISO (PMID:9620085) UniProt PMID:9620085
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chrNW_004936744:1,499,431...1,537,784
Ensembl chrNW_004936744:1,514,821...1,540,580 		JBrowse link
G Guca1a guanylate cyclase activator 1A located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:17,690,484...17,701,288
Ensembl chrNW_004936476:17,691,045...17,701,859 		JBrowse link
G Guca1b guanylate cyclase activator 1B located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936476:17,679,505...17,688,970
Ensembl chrNW_004936476:17,679,500...17,691,037 		JBrowse link
G Ift140 intraflagellar transport 140 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:2,344,448...2,419,396
Ensembl chrNW_004936694:2,344,283...2,423,520 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:15,696,063...15,702,311
Ensembl chrNW_004936479:15,699,604...15,702,352 		JBrowse link
G Pcare photoreceptor cilium actin regulator located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:3,768,032...3,781,511
Ensembl chrNW_004936493:3,768,688...3,777,634 		JBrowse link
G Prkca protein kinase C alpha located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chrNW_004936541:6,231,604...6,488,201
Ensembl chrNW_004936541:6,233,110...6,488,052 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,852,996...1,873,070
Ensembl chrNW_004936557:1,852,940...1,876,313 		JBrowse link
G Slc24a4 solute carrier family 24 member 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936733:515,546...639,699
Ensembl chrNW_004936733:515,510...639,705 		JBrowse link
G Tmem237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936726:872,368...892,185
Ensembl chrNW_004936726:869,238...891,283 		JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:82,702...90,525
Ensembl chrNW_004936500:82,716...90,523 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in ISO (PMID:22791751) UniProt PMID:22791751 NCBI chrNW_004936491:7,202,877...7,221,493
Ensembl chrNW_004936491:7,212,194...7,221,618 		JBrowse link
G Ift52 intraflagellar transport 52 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:2,965,587...3,003,758
Ensembl chrNW_004936530:2,967,533...3,003,980 		JBrowse link
G LOC101966280 sodium/potassium-transporting ATPase subunit alpha-4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936740:445,952...478,580
Ensembl chrNW_004936740:445,952...478,532 		JBrowse link
G Pex6 peroxisomal biogenesis factor 6 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:16,948,137...16,963,601
Ensembl chrNW_004936476:16,949,028...16,964,040 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936496:1,524,123...1,583,114 JBrowse link
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936526:7,202,147...7,431,455
Ensembl chrNW_004936526:7,202,150...7,430,874 		JBrowse link
G Ush1g USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:258,115...262,739
Ensembl chrNW_004936594:259,030...262,778 		JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:17906286) MGI PMID:17906286 NCBI chrNW_004936469:8,653,031...9,209,840 JBrowse link
G Alpk1 alpha kinase 1 located_in ISO (PMID:30967659) UniProt PMID:30967659 NCBI chrNW_004936563:3,233,913...3,296,671
Ensembl chrNW_004936563:3,235,181...3,296,257 		JBrowse link
G Arl3 ARF like GTPase 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936600:3,190,212...3,229,831
Ensembl chrNW_004936600:3,190,208...3,232,755 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:31,962,500...32,019,516
Ensembl chrNW_004936471:31,962,336...32,020,712 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:16632484), (PMID:16682973), (PMID:23943788) MGI PMID:16632484 PMID:16682973 PMID:23943788 NCBI chrNW_004936507:5,223,756...5,305,392
Ensembl chrNW_004936507:5,221,910...5,305,422 		JBrowse link
G Cetn1 centrin 1 located_in ISO (PMID:15347651), (PMID:30120214) UniProt PMID:15347651 PMID:30120214 NCBI chrNW_004936550:102,360...103,032 JBrowse link
G Cetn2 centrin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936714:274,098...279,177
Ensembl chrNW_004936714:274,036...279,381 		JBrowse link
G Cetn3 centrin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:8,501,572...8,516,722
Ensembl chrNW_004936469:8,501,552...8,516,927 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:82,702...90,525
Ensembl chrNW_004936500:82,716...90,523 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936491:7,202,877...7,221,493
Ensembl chrNW_004936491:7,212,194...7,221,618 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:1,735,258...1,740,297
Ensembl chrNW_004936529:1,735,440...1,742,567 		JBrowse link
G Ift122 intraflagellar transport 122 located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004936602:908,034...956,634
Ensembl chrNW_004936602:905,486...956,521 		JBrowse link
G Ift140 intraflagellar transport 140 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:2,344,448...2,419,396
Ensembl chrNW_004936694:2,344,283...2,423,520 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:31637240)
(PMID:21307337)		 UniProt
MGI		 PMID:21307337 PMID:31637240 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Ift52 intraflagellar transport 52 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:2,965,587...3,003,758
Ensembl chrNW_004936530:2,967,533...3,003,980 		JBrowse link
G Ift57 intraflagellar transport 57 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936645:1,471,393...1,524,193
Ensembl chrNW_004936645:1,468,375...1,524,238 		JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (PMID:19208653), (PMID:20368623) MGI PMID:19208653 PMID:20368623 NCBI chrNW_004936720:1,041,216...1,168,725
Ensembl chrNW_004936720:1,041,211...1,168,748 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:8,164,120...8,213,690
Ensembl chrNW_004936536:8,163,554...8,213,708 		JBrowse link
G Kiaa1549 KIAA1549 ortholog located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:3,132,166...3,215,835
Ensembl chrNW_004936592:3,132,703...3,275,199 		JBrowse link
G Kif17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,598,641...6,642,491
Ensembl chrNW_004936474:6,600,209...6,642,496 		JBrowse link
G Kif3a kinesin family member 3A located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004936647:2,461,017...2,502,550
Ensembl chrNW_004936647:2,461,138...2,501,871 		JBrowse link
G Kifap3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:16,664,025...16,777,440
Ensembl chrNW_004936481:16,663,974...16,779,428 		JBrowse link
G Lca5 lebercilin LCA5 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:10,652,378...10,702,761
Ensembl chrNW_004936510:10,671,297...10,703,618 		JBrowse link
G LOC101978287 protocadherin beta-15 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936504:12,871,992...12,887,960 JBrowse link
G Mak male germ cell associated kinase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:2,170,853...2,239,647
Ensembl chrNW_004936534:2,170,794...2,224,065 		JBrowse link
G Myo7a myosin VIIA located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:5,758,572...5,824,526
Ensembl chrNW_004936498:5,751,779...5,824,378 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:21078623) MGI PMID:21078623 NCBI chrNW_004936623:802,152...904,198 JBrowse link
G PCDHB13 protocadherin beta 13 located_in IEA Ensembl GO_REF:0000107 Ensembl chrNW_004936504:12,929,876...12,932,278 JBrowse link
G Poc5 POC5 centriolar protein located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936549:1,065,495...1,111,642
Ensembl chrNW_004936549:1,065,475...1,114,496 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:11767049)
(PMID:11773008), (PMID:14507858)		 MGI
UniProt		 PMID:11767049 PMID:11773008 PMID:14507858 NCBI chrNW_004936496:1,524,123...1,583,114 JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chrNW_004936675:2,527,406...2,564,464 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:10725384) MGI PMID:10725384 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936880:440,900...511,503
Ensembl chrNW_004936880:440,737...512,685 		JBrowse link
G Rpgrip1l RPGRIP1 like located_in ISO
IEA		 RGD
TreeGrafter		 PMID:17558407 GO_REF:0000118 RGD:11537356 NCBI chrNW_004936475:6,219,187...6,321,612
Ensembl chrNW_004936475:6,215,475...6,321,618 		JBrowse link
G Septin2 septin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936745:518,650...555,187
Ensembl chrNW_004936745:518,391...546,953 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:15,878,167...15,911,301
Ensembl chrNW_004936488:15,878,158...15,911,415 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 located_in ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004936471:5,154,294...5,195,083 JBrowse link
G Tbcc tubulin folding cofactor C located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:17,145,956...17,147,299
Ensembl chrNW_004936476:17,146,017...17,147,054 		JBrowse link
G Tmem237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936726:872,368...892,185
Ensembl chrNW_004936726:869,238...891,283 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936524:1,219,101...1,229,937
Ensembl chrNW_004936524:1,219,907...1,229,723 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:16,258,247...16,306,077
Ensembl chrNW_004936488:16,258,058...16,306,589 		JBrowse link
G Ush1g USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:258,115...262,739
Ensembl chrNW_004936594:259,030...262,778 		JBrowse link
G Ush2a usherin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936628:2,123,917...2,859,958
Ensembl chrNW_004936628:2,123,957...2,858,872 		JBrowse link
G Wdr19 WD repeat domain 19 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:6,863,592...6,937,810
Ensembl chrNW_004936482:6,863,571...6,937,979 		JBrowse link
G Whrn whirlin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:3,668,465...3,748,234
Ensembl chrNW_004936487:3,669,104...3,748,238 		JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCDHB13 protocadherin beta 13 located_in IEA Ensembl GO_REF:0000107 Ensembl chrNW_004936504:12,929,876...12,932,278 JBrowse link
G Rho rhodopsin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:896,730...901,480
Ensembl chrNW_004936602:894,617...901,664 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 located_in ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004936471:5,154,294...5,195,083 JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936560:2,881,631...3,057,256
Ensembl chrNW_004936560:2,881,977...3,038,725 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936507:5,223,756...5,305,392
Ensembl chrNW_004936507:5,221,910...5,305,422 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936623:802,152...904,198 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936880:440,900...511,503
Ensembl chrNW_004936880:440,737...512,685 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in
is_active_in		 IEA
ISO		 (PMID:29899041) Ensembl
MGI
TreeGrafter		 PMID:29899041 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:15,878,167...15,911,301
Ensembl chrNW_004936488:15,878,158...15,911,415 		JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:4,969,456...5,326,682
Ensembl chrNW_004936537:5,202,093...5,323,527 		JBrowse link
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:20592197) MGI PMID:20592197 NCBI chrNW_004936560:2,881,631...3,057,256
Ensembl chrNW_004936560:2,881,977...3,038,725 		JBrowse link
G Arr3 arrestin 3 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chrNW_004936762:1,194,251...1,207,914
Ensembl chrNW_004936762:1,194,166...1,208,844 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:31,962,500...32,019,516
Ensembl chrNW_004936471:31,962,336...32,020,712 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936662:1,081,237...1,116,719
Ensembl chrNW_004936662:1,080,295...1,116,636 		JBrowse link
G Bsg basigin (Ok blood group) located_in ISO (PMID:25957687) UniProt PMID:25957687 NCBI chrNW_004936588:181,688...189,795
Ensembl chrNW_004936588:181,576...189,287 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO RGD PMID:11526344 RGD:632484 NCBI chrNW_004936721:1,078,570...1,106,153
Ensembl chrNW_004936721:1,078,650...1,106,113 		JBrowse link
G Cep250 centrosomal protein 250 located_in ISO (PMID:28005958) UniProt PMID:28005958 NCBI chrNW_004936561:5,283,258...5,331,688
Ensembl chrNW_004936561:5,280,959...5,322,038 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chrNW_004936507:5,223,756...5,305,392
Ensembl chrNW_004936507:5,221,910...5,305,422 		JBrowse link
G Cerkl CERK like autophagy regulator located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936509:10,294,247...10,404,743
Ensembl chrNW_004936509:10,294,988...10,404,609 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:82,702...90,525
Ensembl chrNW_004936500:82,716...90,523 		JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chrNW_004936471:36,859,018...36,879,170
Ensembl chrNW_004936471:36,859,018...36,878,878 		JBrowse link
G Cimip3 ciliary microtubule inner protein 3 located_in ISO (PMID:22183407) MGI PMID:22183407
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:14,091,343...14,107,793
Ensembl chrNW_004936482:14,091,913...14,107,787 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:15634774) MGI PMID:15634774 NCBI chrNW_004936744:1,499,431...1,537,784
Ensembl chrNW_004936744:1,514,821...1,540,580 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004936475:9,844,438...9,908,009 JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936544:1,166,896...1,305,339
Ensembl chrNW_004936544:1,166,508...1,305,457 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:6,347,661...6,559,731
Ensembl chrNW_004936567:6,366,489...6,559,766 		JBrowse link
G Gna11 G protein subunit alpha 11 located_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936588:1,770,777...1,789,143
Ensembl chrNW_004936588:1,770,771...1,789,170 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:10396627 PMID:11931744 GO_REF:0000107 RGD:1599009 RGD:6893629 NCBI chrNW_004936529:1,735,258...1,740,297
Ensembl chrNW_004936529:1,735,440...1,742,567 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 located_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:17591908 GO_REF:0000107 GO_REF:0000118 RGD:2302146 NCBI chrNW_004936704:1,079,255...1,093,732
Ensembl chrNW_004936704:1,084,587...1,093,691 		JBrowse link
G Gnb1 G protein subunit beta 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936737:1,518,855...1,554,926
Ensembl chrNW_004936737:1,524,325...1,555,102 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO RGD PMID:10396627 PMID:11931744 RGD:1599009 RGD:6893629 NCBI chrNW_004936803:67,933...71,508
Ensembl chrNW_004936803:67,608...71,541 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004936472:152,202...165,134
Ensembl chrNW_004936472:151,854...165,281 		JBrowse link
G Guca1a guanylate cyclase activator 1A located_in ISO
IEA		 RGD
Ensembl		 PMID:9620085 GO_REF:0000107 RGD:1599354 NCBI chrNW_004936476:17,690,484...17,701,288
Ensembl chrNW_004936476:17,691,045...17,701,859 		JBrowse link
G Guca1b guanylate cyclase activator 1B located_in ISO (PMID:22183407) RGD
MGI		 PMID:9620085 PMID:22183407 RGD:1599354 NCBI chrNW_004936476:17,679,505...17,688,970
Ensembl chrNW_004936476:17,679,500...17,691,037 		JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,235,747...1,250,294
Ensembl chrNW_004936595:1,235,711...1,250,354 		JBrowse link
G Hnf1a HNF1 homeobox A located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936668:62,103...81,549
Ensembl chrNW_004936668:67,535...81,505 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:21307337) MGI PMID:21307337 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004936788:1,258,547...1,401,910
Ensembl chrNW_004936788:1,268,614...1,401,998 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004936630:1,982,860...2,069,472
Ensembl chrNW_004936630:1,982,783...2,071,953 		JBrowse link
G Inha inhibin subunit alpha ISO RGD PMID:7596220 RGD:2290440 NCBI chrNW_004936569:1,949,747...1,954,179
Ensembl chrNW_004936569:1,950,297...1,954,165 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936536:8,164,120...8,213,690
Ensembl chrNW_004936536:8,163,554...8,213,708 		JBrowse link
G Kif17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936474:6,598,641...6,642,491
Ensembl chrNW_004936474:6,600,209...6,642,496 		JBrowse link
G Kifap3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936481:16,664,025...16,777,440
Ensembl chrNW_004936481:16,663,974...16,779,428 		JBrowse link
G Lyar Ly1 antibody reactive located_in ISO (PMID:25735755) UniProt PMID:25735755 NCBI chrNW_004936477:16,934,401...16,958,722 JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISO (PMID:24608321) UniProt PMID:24608321 NCBI chrNW_004936479:21,373,917...22,062,498
Ensembl chrNW_004936479:21,373,746...21,920,214 		JBrowse link
G Mak male germ cell associated kinase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:2,170,853...2,239,647
Ensembl chrNW_004936534:2,170,794...2,224,065 		JBrowse link
G Map1a microtubule associated protein 1A located_in ISO (PMID:24664738) MGI PMID:24664738 NCBI chrNW_004936471:6,685,565...6,706,860
Ensembl chrNW_004936471:6,685,728...6,705,477 		JBrowse link
G Map1b microtubule associated protein 1B located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936549:4,266,371...4,371,579
Ensembl chrNW_004936549:4,266,351...4,371,644 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO RGD PMID:11861639 RGD:1299193 NCBI chrNW_004936783:607,425...704,879
Ensembl chrNW_004936783:607,382...704,889 		JBrowse link
G Myo3b myosin IIIB located_in ISO (PMID:19332056) MGI PMID:19332056 NCBI chrNW_004936509:615,958...1,074,742
Ensembl chrNW_004936509:615,898...1,074,870 		JBrowse link
G Myo5a myosin VA located_in ISO (PMID:14978221) MGI PMID:14978221 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246 		JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in		 IEA
ISO		 (PMID:8842737) Ensembl
UniProt		 PMID:8842737 GO_REF:0000107 NCBI chrNW_004936498:5,758,572...5,824,526
Ensembl chrNW_004936498:5,751,779...5,824,378 		JBrowse link
G Myrip myosin VIIA and Rab interacting protein located_in ISO (PMID:11964381) UniProt PMID:11964381 NCBI chrNW_004936473:28,921,837...29,252,737
Ensembl chrNW_004936473:28,982,604...29,252,745 		JBrowse link
G Nup42 nucleoporin 42 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004936478:345,997...362,501
Ensembl chrNW_004936478:345,974...364,099 		JBrowse link
G Ocrl OCRL inositol polyphosphate-5-phosphatase located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936479:1,955,362...2,011,608
Ensembl chrNW_004936479:1,953,488...2,012,018 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in ISO
IEA		 RGD
Ensembl		 PMID:20209167 GO_REF:0000107 RGD:6893562 NCBI chrNW_004936479:15,696,063...15,702,311
Ensembl chrNW_004936479:15,699,604...15,702,352 		JBrowse link
G Pcare photoreceptor cilium actin regulator located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936493:3,768,032...3,781,511
Ensembl chrNW_004936493:3,768,688...3,777,634 		JBrowse link
G Pcdh15 protocadherin related 15 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936910:233,800...602,145
Ensembl chrNW_004936910:141,917...602,089 		JBrowse link
G Pdc phosducin located_in IEA Ensembl
TreeGrafter
UniProt		 GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936481:3,974,831...3,995,431
Ensembl chrNW_004936481:3,974,682...3,995,423 		JBrowse link
G Pde6b phosphodiesterase 6B located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:22,418,037...22,472,251
Ensembl chrNW_004936477:22,417,453...22,472,185 		JBrowse link
G Prcd photoreceptor disc component located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:1,615,165...1,628,455
Ensembl chrNW_004936594:1,616,794...1,619,049 		JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:19228982) UniProt PMID:19228982 NCBI chrNW_004936477:11,878,261...12,017,228
Ensembl chrNW_004936477:11,878,012...12,018,177 		JBrowse link
G Prph peripherin located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004936512:7,046,275...7,050,958
Ensembl chrNW_004936512:7,047,253...7,051,007 		JBrowse link
G Prph2 peripherin 2 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chrNW_004936476:17,159,756...17,174,226
Ensembl chrNW_004936476:17,160,016...17,173,981 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:10,745,465...10,758,812
Ensembl chrNW_004936487:10,745,327...10,758,823 		JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K located_in ISO (PMID:18308476) MGI PMID:18308476 NCBI chrNW_004936639:1,279,795...1,683,944
Ensembl chrNW_004936639:1,278,808...1,682,279 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:16,738,204...16,815,561
Ensembl chrNW_004936471:16,738,230...16,815,943 		JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:19883736 RGD:2314691 NCBI chrNW_004936509:2,722,279...3,006,436
Ensembl chrNW_004936509:2,722,428...3,005,288 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,852,996...1,873,070
Ensembl chrNW_004936557:1,852,940...1,876,313 		JBrowse link
G Rho rhodopsin located_in ISO
IEA		 RGD
UniProt
Ensembl		 PMID:8814134 GO_REF:0000044 GO_REF:0000107 RGD:6893595 NCBI chrNW_004936602:896,730...901,480
Ensembl chrNW_004936602:894,617...901,664 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chrNW_004936581:642,322...644,286
Ensembl chrNW_004936581:641,753...644,637 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:14507858), (PMID:15269252) UniProt PMID:14507858 PMID:15269252 NCBI chrNW_004936496:1,524,123...1,583,114 JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chrNW_004936675:2,527,406...2,564,464 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) UniProt PMID:12140192 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Sag S-antigen visual arrestin located_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:10396627 GO_REF:0000107 GO_REF:0000118 RGD:6893629 NCBI chrNW_004936525:3,932,118...3,965,651
Ensembl chrNW_004936525:3,931,933...3,964,834 		JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 located_in ISO (PMID:19299912) BHF-UCL PMID:19299912 NCBI chrNW_004936599:196,512...463,749
Ensembl chrNW_004936599:217,138...463,771 		JBrowse link
G Stx3 syntaxin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:2,944,230...2,976,957
Ensembl chrNW_004936581:2,941,953...2,971,405 		JBrowse link
G Tulp1 TUB like protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936476:23,744,707...23,757,002
Ensembl chrNW_004936476:23,744,757...23,756,565 		JBrowse link
G Ush1c USH1 protein network component harmonin located_in ISO (PMID:14578428), (PMID:17906286) RGD
MGI		 PMID:14578428 PMID:17906286 RGD:1303964 NCBI chrNW_004936528:1,552,175...1,594,740
Ensembl chrNW_004936528:1,552,289...1,594,801 		JBrowse link
G Vcan versican located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004936469:2,585,142...2,688,029
Ensembl chrNW_004936469:2,585,134...2,688,029 		JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr1 cadherin related family member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936767:805,910...829,838
Ensembl chrNW_004936767:805,558...827,712 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:14,091,343...14,107,793
Ensembl chrNW_004936482:14,091,913...14,107,787 		JBrowse link
G Gnb1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004936737:1,518,855...1,554,926
Ensembl chrNW_004936737:1,524,325...1,555,102 		JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:1,235,747...1,250,294
Ensembl chrNW_004936595:1,235,711...1,250,354 		JBrowse link
G Pde6g phosphodiesterase 6G located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:5,263,345...5,267,240
Ensembl chrNW_004936594:5,263,333...5,267,476 		JBrowse link
G Pde6h phosphodiesterase 6H located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936587:2,505,755...2,514,103
Ensembl chrNW_004936587:2,506,585...2,514,157 		JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20089132 RGD:5131540 NCBI chrNW_004936475:22,074,620...22,138,308
Ensembl chrNW_004936475:22,074,568...22,138,334 		JBrowse link
G Prcd photoreceptor disc component located_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936594:1,615,165...1,628,455
Ensembl chrNW_004936594:1,616,794...1,619,049 		JBrowse link
G Prom1 prominin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:11,878,261...12,017,228
Ensembl chrNW_004936477:11,878,012...12,018,177 		JBrowse link
G Prph peripherin located_in ISO (PMID:10414956) MGI PMID:10414956 NCBI chrNW_004936512:7,046,275...7,050,958
Ensembl chrNW_004936512:7,047,253...7,051,007 		JBrowse link
G Rdh11 retinol dehydrogenase 11 NOT|located_in ISO (PMID:15790565) MGI PMID:15790565 NCBI chrNW_004936495:11,065,946...11,082,104
Ensembl chrNW_004936495:11,066,660...11,082,044 		JBrowse link
G Rho rhodopsin located_in ISO
IEA		 RGD
Ensembl		 PMID:2209754 GO_REF:0000107 RGD:6893561 NCBI chrNW_004936602:896,730...901,480
Ensembl chrNW_004936602:894,617...901,664 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936581:642,322...644,286
Ensembl chrNW_004936581:641,753...644,637 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936507:5,223,756...5,305,392
Ensembl chrNW_004936507:5,221,910...5,305,422 		JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 is_active_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004936507:5,223,756...5,305,392
Ensembl chrNW_004936507:5,221,910...5,305,422 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:14,091,343...14,107,793
Ensembl chrNW_004936482:14,091,913...14,107,787 		JBrowse link
G Gucy2f guanylate cyclase 2F, retinal located_in ISO (PMID:21078983) UniProt PMID:21078983 NCBI chrNW_004936499:5,653,384...5,752,732 JBrowse link
G LOC101966280 sodium/potassium-transporting ATPase subunit alpha-4 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936740:445,952...478,580
Ensembl chrNW_004936740:445,952...478,532 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936557:1,852,996...1,873,070
Ensembl chrNW_004936557:1,852,940...1,876,313 		JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936570:3,042,233...3,043,884
Ensembl chrNW_004936570:3,042,773...3,043,480 		JBrowse link
G Rho rhodopsin located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936602:896,730...901,480
Ensembl chrNW_004936602:894,617...901,664 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in
is_active_in		 IEA
ISO		 (PMID:29899041) Ensembl
TreeGrafter
MGI		 PMID:29899041 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936488:15,878,167...15,911,301
Ensembl chrNW_004936488:15,878,158...15,911,415 		JBrowse link
G Tmem237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936726:872,368...892,185
Ensembl chrNW_004936726:869,238...891,283 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18223
    cellular anatomical structure 18002
      cell projection 2554
        plasma membrane bounded cell projection 2497
          cilium 944
            non-motile cilium 172
              9+0 non-motile cilium 129
                photoreceptor cell cilium + 116
paths to the root