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ONTOLOGY REPORT - ANNOTATIONS

Term:9+0 non-motile cilium
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Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium


show annotations for term's descendants           Sort by:
9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C10H1orf115 chromosome 10 C1orf115 homolog located_in IEA Ensembl GO_REF:0000107 NCBI chr10:10,115,917...10,127,722
Ensembl chr10:10,115,923...10,127,714 		JBrowse link
G CFAP96 cilia and flagella associated protein 96 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:46,470,680...46,612,173
Ensembl chr15:46,470,765...46,490,006 		JBrowse link
G DYNLL2 dynein light chain LC8-type 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:34,348,336...34,356,478
Ensembl chr12:34,349,294...34,356,472 		JBrowse link
G ENKD1 enkurin domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:28,283,108...28,289,266
Ensembl chr 6:28,283,117...28,287,306 		JBrowse link
G IFT80 intraflagellar transport 80 located_in
is_active_in		 IEA
ISO		 (PMID:26996322) Ensembl
MGI		 PMID:26996322 GO_REF:0000107 NCBI chr13:99,943,203...100,078,148
Ensembl chr13:99,943,208...100,078,148 		JBrowse link
G IFTAP intraflagellar transport associated protein located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:24,477,084...24,551,690
Ensembl chr 2:24,476,321...24,531,368 		JBrowse link
G PHYH phytanoyl-CoA 2-hydroxylase located_in IEA Ensembl GO_REF:0000107 NCBI chr10:48,404,298...48,423,978
Ensembl chr10:48,404,293...48,423,973 		JBrowse link
G PKHD1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:45,447,354...45,925,141
Ensembl chr 7:45,450,950...45,925,149 		JBrowse link
G SMO smoothened, frizzled class receptor located_in IEA Ensembl GO_REF:0000107 NCBI chr18:19,450,730...19,478,796
Ensembl chr18:19,450,743...19,478,898 		JBrowse link
G TTLL4 tubulin tyrosine ligase like 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:120,748,537...120,791,825
Ensembl chr15:120,773,185...120,793,194 		JBrowse link
G TTLL5 tubulin tyrosine ligase like 5 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chr 7:98,822,338...99,090,076
Ensembl chr 7:98,823,871...99,130,915 		JBrowse link
G TTLL6 tubulin tyrosine ligase like 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:24,980,421...25,033,509
Ensembl chr12:24,987,347...25,022,530 		JBrowse link
G TTLL7 tubulin tyrosine ligase like 7 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chr 6:129,708,353...129,868,498
Ensembl chr 6:129,708,374...129,867,887 		JBrowse link
G TULP3 TUB like protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,448...67,238,322 		JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chr 3:55,872,607...55,936,516
Ensembl chr 3:55,874,250...55,922,979 		JBrowse link
G GUCA1A guanylate cyclase activator 1A located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:37,282,630...37,296,713
Ensembl chr 7:37,282,700...37,296,717 		JBrowse link
G GUCA1B guanylate cyclase activator 1B located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:37,297,901...37,311,158
Ensembl chr 7:37,297,908...37,310,170 		JBrowse link
G IFT140 intraflagellar transport 140 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,635...40,372,135 		JBrowse link
G OPN1SW opsin 1, short wave sensitive located_in IEA Ensembl GO_REF:0000107 NCBI chr18:19,836,453...19,839,425
Ensembl chr18:19,836,453...19,839,425 		JBrowse link
G PCARE photoreceptor cilium actin regulator located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:110,209,100...110,220,608
Ensembl chr 3:110,209,535...110,218,348 		JBrowse link
G PRKCA protein kinase C alpha located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chr12:12,882,287...13,268,647
Ensembl chr12:12,882,064...13,263,554 		JBrowse link
G RD3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:131,712,858...131,716,179
Ensembl chr 9:131,705,229...131,719,288 		JBrowse link
G SLC24A4 solute carrier family 24 member 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:113,836,207...114,014,952
Ensembl chr 7:113,836,230...114,014,949 		JBrowse link
G TMEM237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:105,255,485...105,276,624
Ensembl chr15:105,252,479...105,276,970 		JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFAP410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:207,196,884...207,204,741
Ensembl chr13:207,196,117...207,204,719 		JBrowse link
G FAM161A FAM161 centrosomal protein A located_in ISO (PMID:22791751) UniProt PMID:22791751 NCBI chr 3:79,952,698...79,978,584
Ensembl chr 3:79,952,844...79,978,587 		JBrowse link
G IFT52 intraflagellar transport 52 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:46,209,956...46,246,696
Ensembl chr17:46,210,150...46,246,674 		JBrowse link
G LOC100157711 sodium/potassium-transporting ATPase subunit alpha-4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:90,291,281...90,319,590
Ensembl chr 4:90,290,394...90,332,760 		JBrowse link
G PEX6 peroxisomal biogenesis factor 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:38,039,852...38,052,384
Ensembl chr 7:38,039,862...38,052,369 		JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610 		JBrowse link
G SDCCAG8 SHH signaling and ciliogenesis regulator SDCCAG8 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:16,191,178...16,441,828
Ensembl chr10:16,191,156...16,441,815 		JBrowse link
G USH1G USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,333,640...6,341,083
Ensembl chr12:6,334,310...6,340,361 		JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRV1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:17906286) MGI PMID:17906286 NCBI chr 2:97,703,648...98,277,847
Ensembl chr 2:97,735,053...98,275,748 		JBrowse link
G ALPK1 alpha kinase 1 located_in ISO (PMID:30967659) UniProt PMID:30967659 NCBI chr 8:110,241,220...110,368,001
Ensembl chr 8:110,241,227...110,367,912 		JBrowse link
G ARL3 ADP ribosylation factor like GTPase 3 located_in ISS UniProt GO_REF:0000024 NCBI chr14:113,668,375...113,699,583
Ensembl chr14:113,665,270...113,707,591 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:60,631,913...60,693,359
Ensembl chr 7:60,631,914...60,693,334 		JBrowse link
G CEP290 centrosomal protein 290 located_in ISO (PMID:16632484), (PMID:16682973), (PMID:23943788) MGI PMID:16632484 PMID:16682973 PMID:23943788 NCBI chr 5:94,384,397...94,474,337
Ensembl chr 5:94,384,415...94,474,335 		JBrowse link
G CETN1 centrin 1 located_in ISO (PMID:15347651), (PMID:30120214) UniProt PMID:15347651 PMID:30120214 NCBI chr 6:105,740,188...105,742,226
Ensembl chr 6:105,740,550...105,741,465 		JBrowse link
G CETN2 centrin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:123,902,240...123,906,046
Ensembl chr  X:123,902,241...123,906,230 		JBrowse link
G CETN3 centrin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:97,574,003...97,593,320
Ensembl chr 2:97,572,449...97,593,291 		JBrowse link
G CFAP410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:207,196,884...207,204,741
Ensembl chr13:207,196,117...207,204,719 		JBrowse link
G FAM161A FAM161 centrosomal protein A located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:79,952,698...79,978,584
Ensembl chr 3:79,952,844...79,978,587 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:32,671,377...32,678,394
Ensembl chr13:32,671,432...32,678,391 		JBrowse link
G IFT122 intraflagellar transport 122 located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chr13:68,828,710...68,902,062
Ensembl chr13:68,828,719...68,902,060 		JBrowse link
G IFT140 intraflagellar transport 140 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,635...40,372,135 		JBrowse link
G IFT20 intraflagellar transport 20 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:44,609,586...44,616,685
Ensembl chr12:44,609,508...44,616,655 		JBrowse link
G IFT52 intraflagellar transport 52 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:46,209,956...46,246,696
Ensembl chr17:46,210,150...46,246,674 		JBrowse link
G IFT57 intraflagellar transport 57 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:151,298,552...151,356,715
Ensembl chr13:151,298,554...151,357,155 		JBrowse link
G IFT88 intraflagellar transport 88 located_in ISO (PMID:19208653), (PMID:20368623) MGI PMID:19208653 PMID:20368623 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,025,613 		JBrowse link
G IQCB1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:138,689,544...138,741,228
Ensembl chr13:138,681,740...138,741,367 		JBrowse link
G KIAA1549 KIAA1549 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:10,676,845...10,829,487
Ensembl chr18:10,675,328...10,829,360 		JBrowse link
G KIF17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:78,897,875...78,953,024 JBrowse link
G KIF3A kinesin family member 3A located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chr 2:134,932,339...135,069,408
Ensembl chr 2:134,932,615...135,069,377 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:80,922,032...81,105,135
Ensembl chr 4:80,921,682...81,108,360 		JBrowse link
G LCA5 lebercilin LCA5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:86,596,967...86,685,073
Ensembl chr 1:86,597,283...86,685,068 		JBrowse link
G LOC100514339 protocadherin beta-2-like located_in ISO (PMID:18279309) MGI PMID:18279309 NCBI chr 2:142,803,760...142,808,886 JBrowse link
G MAK male germ cell associated kinase located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:7,482,089...7,538,373
Ensembl chr 7:7,482,097...7,538,282 		JBrowse link
G MYO7A myosin VIIA located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296 		JBrowse link
G NPHP1 nephrocystin 1 located_in ISO (PMID:16885411) UniProt PMID:16885411 NCBI chr 3:46,316,864...46,378,279
Ensembl chr 3:46,316,875...46,377,273 		JBrowse link
G NPHP4 nephrocystin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:66,815,282...66,928,245
Ensembl chr 6:66,815,281...66,928,146 		JBrowse link
G POC5 POC5 centriolar protein is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 2:84,689,592...84,730,980
Ensembl chr 2:84,689,370...84,730,951 		JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610 		JBrowse link
G RP1L1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chr14:13,790,287...13,841,230 JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in ISO (PMID:10725384) MGI PMID:10725384 NCBI chr  X:34,238,961...34,522,814
Ensembl chr  X:34,228,124...34,296,589 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 is_active_in
located_in		 IBA
ISO		 (PMID:25398945) GO_Central
UniProt		 PMID:25398945 GO_REF:0000033 NCBI chr 7:77,813,964...77,903,973
Ensembl chr 7:77,813,775...77,903,928 		JBrowse link
G RPGRIP1L RPGRIP1 like is_active_in ISO
IBA		 RGD
GO_Central		 PMID:17558407 GO_REF:0000033 RGD:11537356 NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,190 		JBrowse link
G SEPTIN2 septin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:140,023,836...140,058,291
Ensembl chr15:140,024,049...140,058,289 		JBrowse link
G SPATA7 spermatogenesis associated 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:110,309,414...110,368,370
Ensembl chr 7:110,309,462...110,364,033 		JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:129,461,598...129,514,380
Ensembl chr 1:129,462,568...129,511,568 		JBrowse link
G TBCC tubulin folding cofactor C located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:37,822,764...37,823,994
Ensembl chr 7:37,822,767...37,824,953 		JBrowse link
G TMEM237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:105,255,485...105,276,624
Ensembl chr15:105,252,479...105,276,970 		JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in
is_active_in		 IDA
IBA
IEA		 (PMID:21159800) BHF-UCL
GO_Central
Ensembl		 PMID:21159800 GO_REF:0000033 GO_REF:0000107 NCBI chr10:33,865,967...33,878,135
Ensembl chr10:33,865,959...33,879,070 		JBrowse link
G TSGA10IP testis specific 10 interacting protein is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 2:6,374,617...6,391,457
Ensembl chr 2:6,374,617...6,387,718 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:110,731,729...110,783,999
Ensembl chr 7:110,731,731...110,784,853 		JBrowse link
G USH1G USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chr12:6,333,640...6,341,083
Ensembl chr12:6,334,310...6,340,361 		JBrowse link
G USH2A usherin located_in ISO (PMID:17906286), (PMID:21212183) RGD
MGI		 PMID:16434480 PMID:17906286 PMID:21212183 RGD:1600128 NCBI chr10:5,825,591...6,662,733 JBrowse link
G WDR19 WD repeat domain 19 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:30,453,969...30,553,699
Ensembl chr 8:30,463,862...30,553,703 		JBrowse link
G WHRN whirlin located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:255,009,765...255,095,281
Ensembl chr 1:255,009,771...255,095,222 		JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHO rhodopsin located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr13:68,908,578...68,913,651
Ensembl chr13:68,908,578...68,913,651 		JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:129,461,598...129,514,380
Ensembl chr 1:129,462,568...129,511,568 		JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,397...28,760,467 		JBrowse link
G CEP290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr 5:94,384,397...94,474,337
Ensembl chr 5:94,384,415...94,474,335 		JBrowse link
G NPHP1 nephrocystin 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr 3:46,316,864...46,378,279
Ensembl chr 3:46,316,875...46,377,273 		JBrowse link
G NPHP4 nephrocystin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:66,815,282...66,928,245
Ensembl chr 6:66,815,281...66,928,146 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr  X:34,238,961...34,522,814
Ensembl chr  X:34,228,124...34,296,589 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr 7:77,813,964...77,903,973
Ensembl chr 7:77,813,775...77,903,928 		JBrowse link
G SPATA7 spermatogenesis associated 7 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:110,309,414...110,368,370
Ensembl chr 7:110,309,462...110,364,033 		JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:123,202,720...123,333,044
Ensembl chr 4:123,202,753...123,333,041 		JBrowse link
G AHI1 Abelson helper integration site 1 located_in ISO (PMID:20592197) MGI PMID:20592197 NCBI chr 1:28,566,279...28,760,471
Ensembl chr 1:28,566,397...28,760,467 		JBrowse link
G ARR3 arrestin 3 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr  X:56,295,107...56,310,507
Ensembl chr  X:56,296,596...56,310,506 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:60,631,913...60,693,359
Ensembl chr 7:60,631,914...60,693,334 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 located_in IEA Ensembl GO_REF:0000107 Ensembl chr 8:102,213,455...102,259,204 JBrowse link
G BSG basigin located_in ISO (PMID:25957687) UniProt PMID:25957687 NCBI chr 2:77,735,586...77,743,451 JBrowse link
G CACNA1F calcium voltage-gated channel subunit alpha1 F ISO RGD PMID:11526344 RGD:632484 NCBI chr  X:43,250,449...43,284,458
Ensembl chr  X:43,251,370...43,283,990 		JBrowse link
G CEP250 centrosomal protein 250 located_in ISO (PMID:28005958) UniProt PMID:28005958 NCBI chr17:38,809,724...38,872,796
Ensembl chr17:38,810,522...38,867,203 		JBrowse link
G CEP290 centrosomal protein 290 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chr 5:94,384,397...94,474,337
Ensembl chr 5:94,384,415...94,474,335 		JBrowse link
G CERKL ceramide kinase like located_in IEA Ensembl GO_REF:0000107 NCBI chr15:87,029,237...87,159,555
Ensembl chr15:87,029,306...87,159,566 		JBrowse link
G CFAP410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:207,196,884...207,204,741
Ensembl chr13:207,196,117...207,204,719 		JBrowse link
G CIB2 calcium and integrin binding family member 2 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chr 7:47,807,806...47,813,400
Ensembl chr 7:47,788,646...47,813,399 		JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:10725384), (PMID:15634774), (PMID:20592197) MGI PMID:10725384 PMID:15634774 PMID:20592197 NCBI chr 8:37,896,460...37,968,935
Ensembl chr 8:37,896,459...37,969,344 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:15634774) MGI PMID:15634774 NCBI chr 3:55,872,607...55,936,516
Ensembl chr 3:55,874,250...55,922,979 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chr 6:19,752,734...19,865,830 JBrowse link
G CNGB3 cyclic nucleotide gated channel subunit beta 3 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 4:50,112,927...50,263,264
Ensembl chr 4:50,112,927...50,263,222 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:20,137,246...20,332,539
Ensembl chr10:20,137,451...20,332,414 		JBrowse link
G GNA11 G protein subunit alpha 11 located_in ISS AgBase GO_REF:0000024 NCBI chr 2:75,439,405...75,456,855
Ensembl chr 2:75,437,201...75,457,092 		JBrowse link
G GNAQ G protein subunit alpha q located_in ISS AgBase GO_REF:0000024 NCBI chr 1:230,607,469...230,906,988
Ensembl chr 1:230,605,265...230,907,674 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:10396627 PMID:11931744 GO_REF:0000107 RGD:1599009 RGD:6893629 NCBI chr13:32,671,377...32,678,394
Ensembl chr13:32,671,432...32,678,391 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:17591908 GO_REF:0000033 GO_REF:0000107 RGD:2302146 NCBI chr 4:110,512,349...110,523,222
Ensembl chr 4:110,498,707...110,524,072 		JBrowse link
G GNB1 G protein subunit beta 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:63,867,155...63,957,514
Ensembl chr 6:63,867,158...63,952,505 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 ISO RGD PMID:10396627 PMID:11931744 RGD:1599009 RGD:6893629 NCBI chr 9:73,403,647...73,717,746
Ensembl chr 9:73,403,740...73,719,161 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chr11:78,793,670...78,803,291
Ensembl chr11:78,793,777...78,804,262 		JBrowse link
G GUCA1A guanylate cyclase activator 1A located_in ISO
IEA		 RGD
Ensembl		 PMID:9620085 GO_REF:0000107 RGD:1599354 NCBI chr 7:37,282,630...37,296,713
Ensembl chr 7:37,282,700...37,296,717 		JBrowse link
G GUCA1B guanylate cyclase activator 1B located_in ISO (PMID:22183407) RGD
MGI		 PMID:9620085 PMID:22183407 RGD:1599354 NCBI chr 7:37,297,901...37,311,158
Ensembl chr 7:37,297,908...37,310,170 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chr12:53,200,570...53,250,566
Ensembl chr12:53,235,801...53,249,467 		JBrowse link
G HNF1A HNF1 homeobox A located_in IEA Ensembl GO_REF:0000107 NCBI chr14:40,868,819...40,888,322
Ensembl chr14:40,868,676...40,888,328 		JBrowse link
G IFT20 intraflagellar transport 20 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:44,609,586...44,616,685
Ensembl chr12:44,609,508...44,616,655 		JBrowse link
G IMPG1 interphotoreceptor matrix proteoglycan 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 1:89,836,013...89,986,530
Ensembl chr 1:89,836,050...89,987,397 		JBrowse link
G IMPG2 interphotoreceptor matrix proteoglycan 2 located_in IEA UniProt GO_REF:0000044 NCBI chr13:157,672,973...157,763,817
Ensembl chr13:157,675,265...157,759,266 		JBrowse link
G INHA inhibin subunit alpha ISO RGD PMID:7596220 RGD:2290440 NCBI chr15:121,581,847...121,586,020
Ensembl chr15:121,580,803...121,586,006 		JBrowse link
G IQCB1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:138,689,544...138,741,228
Ensembl chr13:138,681,740...138,741,367 		JBrowse link
G KIF17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:78,897,875...78,953,024 JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:80,922,032...81,105,135
Ensembl chr 4:80,921,682...81,108,360 		JBrowse link
G LOC494564 medium-wave-sensitive opsin is_active_in
located_in		 ISO
IBA		 (PMID:10725384), (PMID:12651948), (PMID:19332056), (PMID:23351594), (PMID:23386608) RGD
GO_Central
MGI		 PMID:10725384 PMID:12651948 PMID:19332056 PMID:20209167 PMID:23351594 More... GO_REF:0000033 RGD:6893562 NCBI chr  X:124,816,014...124,828,225 JBrowse link
G LYAR Ly1 antibody reactive located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:6,081,332...6,099,861
Ensembl chr 8:6,081,368...6,099,857 		JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISO (PMID:24608321) UniProt PMID:24608321 NCBI chr 9:100,846,693...102,171,199
Ensembl chr 9:100,847,013...102,170,004 		JBrowse link
G MAK male germ cell associated kinase located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:7,482,089...7,538,373
Ensembl chr 7:7,482,097...7,538,282 		JBrowse link
G MAP1A microtubule associated protein 1A located_in ISO (PMID:24664738) MGI PMID:24664738 NCBI chr 1:127,916,639...127,936,952
Ensembl chr 1:127,916,644...127,936,955 		JBrowse link
G MAP1B microtubule associated protein 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr16:48,403,338...48,501,453
Ensembl chr16:48,403,568...48,498,885 		JBrowse link
G MERTK MER proto-oncogene, tyrosine kinase ISO RGD PMID:11861639 RGD:1299193 NCBI chr 3:44,349,377...44,483,400
Ensembl chr 3:44,349,385...44,483,402 		JBrowse link
G MYO3B myosin IIIB located_in ISO (PMID:19332056) MGI PMID:19332056 NCBI chr15:76,432,429...76,855,443
Ensembl chr15:76,401,963...76,855,429 		JBrowse link
G MYO5A myosin VA located_in ISO (PMID:14978221) MGI PMID:14978221 NCBI chr 1:119,165,751...119,398,591
Ensembl chr 1:119,165,942...119,394,725 		JBrowse link
G MYO7A myosin VIIA located_in
NOT|located_in		 IEA
ISO		 (PMID:8842737) Ensembl
UniProt		 PMID:8842737 GO_REF:0000107 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296 		JBrowse link
G MYRIP myosin VIIA and Rab interacting protein located_in ISO (PMID:11964381) UniProt PMID:11964381 NCBI chr13:24,347,574...24,556,743
Ensembl chr13:24,347,660...24,556,735 		JBrowse link
G NUP42 nucleoporin 42 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chr 9:91,981,713...92,001,798
Ensembl chr 9:91,981,754...92,012,113 		JBrowse link
G OCRL OCRL inositol polyphosphate-5-phosphatase located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:106,124,991...106,188,066
Ensembl chr  X:106,135,431...106,190,110 		JBrowse link
G OPN1SW opsin 1, short wave sensitive is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:20209167 GO_REF:0000033 GO_REF:0000107 RGD:6893562 NCBI chr18:19,836,453...19,839,425
Ensembl chr18:19,836,453...19,839,425 		JBrowse link
G OPN5 opsin 5 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 7:42,476,125...42,507,181
Ensembl chr 7:42,476,125...42,527,121 		JBrowse link
G PCARE photoreceptor cilium actin regulator is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 3:110,209,100...110,220,608
Ensembl chr 3:110,209,535...110,218,348 		JBrowse link
G PCDH15 protocadherin related 15 located_in ISO (PMID:14570705) HGNC-UCL
MGI		 PMID:14570705 NCBI chr14:95,530,168...96,388,032 JBrowse link
G PDC phosducin located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr 9:127,600,114...127,619,759
Ensembl chr 9:127,601,385...127,619,697 		JBrowse link
G PDE6B phosphodiesterase 6B located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:80,378...111,960
Ensembl chr 8:80,378...110,672 		JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in IEA UniProt GO_REF:0000044 NCBI chr10:52,224,367...52,408,928
Ensembl chr10:52,224,389...52,408,922 		JBrowse link
G PRCD photoreceptor disc component located_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,966,627...4,976,694
Ensembl chr12:4,973,258...4,975,835 		JBrowse link
G PROM1 prominin 1 located_in ISO (PMID:19228982) UniProt PMID:19228982 NCBI chr 8:11,215,659...11,331,442
Ensembl chr 8:11,215,663...11,317,312 		JBrowse link
G PRPH peripherin located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chr 5:15,283,399...15,288,800
Ensembl chr 5:15,285,294...15,288,798 		JBrowse link
G PRPH2 peripherin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:37,788,547...37,805,142
Ensembl chr 7:37,790,178...37,805,142 		JBrowse link
G PTGS1 prostaglandin-endoperoxide synthase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:262,456,106...262,482,159
Ensembl chr 1:262,456,155...262,483,035 		JBrowse link
G PTPRK protein tyrosine phosphatase receptor type K located_in ISO (PMID:18308476) MGI PMID:18308476 NCBI chr 1:34,693,363...35,258,699
Ensembl chr 1:34,693,368...35,258,699 		JBrowse link
G RAB27A RAB27A, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:116,532,816...116,606,477
Ensembl chr 1:116,532,974...116,606,474 		JBrowse link
G RAPGEF4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:19883736 RGD:2314691 NCBI chr15:78,773,270...79,094,490
Ensembl chr15:78,773,266...79,095,040 		JBrowse link
G RD3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:131,712,858...131,716,179
Ensembl chr 9:131,705,229...131,719,288 		JBrowse link
G RHO rhodopsin is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
UniProt
Ensembl		 PMID:8814134 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 RGD:6893595 NCBI chr13:68,908,578...68,913,651
Ensembl chr13:68,908,578...68,913,651 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:9,125,377...9,127,615
Ensembl chr 2:9,125,381...9,127,615 		JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610 		JBrowse link
G RP1L1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chr14:13,790,287...13,841,230 JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) UniProt PMID:12140192 NCBI chr  X:34,238,961...34,522,814
Ensembl chr  X:34,228,124...34,296,589 		JBrowse link
G SAG S-antigen visual arrestin is_active_in
located_in		 ISO
IBA
ISS
IEA		 RGD
GO_Central
UniProt
Ensembl		 PMID:10396627 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 RGD:6893629 NCBI chr15:133,704,975...133,741,844
Ensembl chr15:133,705,008...133,741,798 		JBrowse link
G SHANK2 SH3 and multiple ankyrin repeat domains 2 located_in ISO (PMID:19299912) BHF-UCL PMID:19299912 NCBI chr 2:2,517,853...3,016,959
Ensembl chr 2:2,864,331...3,015,314 		JBrowse link
G STX3 syntaxin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:11,694,788...11,739,858
Ensembl chr 2:11,696,913...11,740,744 		JBrowse link
G TULP1 TUB like protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:31,362,670...31,379,948
Ensembl chr 7:31,361,873...31,379,204 		JBrowse link
G USH1C USH1 protein network component harmonin located_in ISO (PMID:14578428), (PMID:17906286) RGD
MGI		 PMID:14578428 PMID:17906286 RGD:1303964 NCBI chr 2:41,593,793...41,646,777
Ensembl chr 2:41,593,802...41,647,247 		JBrowse link
G VCAN versican located_in IEA UniProt GO_REF:0000044 NCBI chr 2:91,682,177...91,811,674
Ensembl chr 2:91,384,391...91,811,208 		JBrowse link
G VCAN versican located_in IEA UniProt GO_REF:0000044 NCBI chr 2:91,358,348...91,643,697
Ensembl chr 2:91,384,391...91,811,208 		JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDHR1 cadherin related family member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:85,429,506...85,455,823
Ensembl chr14:85,429,952...85,455,822 		JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chr 8:37,896,460...37,968,935
Ensembl chr 8:37,896,459...37,969,344 		JBrowse link
G GNB1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chr 6:63,867,155...63,957,514
Ensembl chr 6:63,867,158...63,952,505 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chr12:53,200,570...53,250,566
Ensembl chr12:53,235,801...53,249,467 		JBrowse link
G PDE6A phosphodiesterase 6A is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 2:150,926,652...150,986,050
Ensembl chr 2:150,927,770...150,985,318 		JBrowse link
G PDE6B phosphodiesterase 6B is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 8:80,378...111,960
Ensembl chr 8:80,378...110,672 		JBrowse link
G PDE6G phosphodiesterase 6G is_active_in IBA GO_Central GO_REF:0000033 NCBI chr12:1,235,886...1,239,808
Ensembl chr12:1,236,210...1,239,306 		JBrowse link
G PDE6H phosphodiesterase 6H is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 5:57,555,448...57,582,324
Ensembl chr 5:57,556,149...57,594,423 		JBrowse link
G PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20089132 RGD:5131540 NCBI chr 6:14,633,756...14,715,921
Ensembl chr 6:14,633,751...14,715,965 		JBrowse link
G PRCD photoreceptor disc component located_in
is_active_in		 IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr12:4,966,627...4,976,694
Ensembl chr12:4,973,258...4,975,835 		JBrowse link
G PROM1 prominin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:11,215,659...11,331,442
Ensembl chr 8:11,215,663...11,317,312 		JBrowse link
G PRPH peripherin located_in ISO (PMID:10414956) MGI PMID:10414956 NCBI chr 5:15,283,399...15,288,800
Ensembl chr 5:15,285,294...15,288,798 		JBrowse link
G RDH11 retinol dehydrogenase 11 NOT|located_in ISO (PMID:15790565) MGI PMID:15790565 NCBI chr 7:91,415,041...91,452,530
Ensembl chr 7:91,415,042...91,452,405 		JBrowse link
G RHO rhodopsin located_in ISO
ISS
IEA		 RGD
UniProt
Ensembl		 PMID:2209754 GO_REF:0000024 GO_REF:0000107 RGD:6893561 NCBI chr13:68,908,578...68,913,651
Ensembl chr13:68,908,578...68,913,651 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:9,125,377...9,127,615
Ensembl chr 2:9,125,381...9,127,615 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEP290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr 5:94,384,397...94,474,337
Ensembl chr 5:94,384,415...94,474,335 		JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEP290 centrosomal protein 290 is_active_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr 5:94,384,397...94,474,337
Ensembl chr 5:94,384,415...94,474,335 		JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:22802073) UniProt PMID:22802073 NCBI chr 8:37,896,460...37,968,935
Ensembl chr 8:37,896,459...37,969,344 		JBrowse link
G GUCY2F guanylate cyclase 2F, retinal located_in ISO (PMID:21078983) UniProt PMID:21078983 NCBI chr  X:89,557,952...89,653,491 JBrowse link
G LOC100157711 sodium/potassium-transporting ATPase subunit alpha-4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:90,291,281...90,319,590
Ensembl chr 4:90,290,394...90,332,760 		JBrowse link
G RD3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:131,712,858...131,716,179
Ensembl chr 9:131,705,229...131,719,288 		JBrowse link
G RGS9BP regulator of G protein signaling 9 binding protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:42,560,059...42,563,179
Ensembl chr 6:42,560,113...42,565,154 		JBrowse link
G RHO rhodopsin located_in IEA Ensembl GO_REF:0000107 NCBI chr13:68,908,578...68,913,651
Ensembl chr13:68,908,578...68,913,651 		JBrowse link
G SPATA7 spermatogenesis associated 7 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:110,309,414...110,368,370
Ensembl chr 7:110,309,462...110,364,033 		JBrowse link
G TMEM237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:105,255,485...105,276,624
Ensembl chr15:105,252,479...105,276,970 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19750
    cellular anatomical structure 19505
      cell projection 2629
        plasma membrane bounded cell projection 2558
          cilium 964
            non-motile cilium 176
              9+0 non-motile cilium 136
                photoreceptor cell cilium + 122
paths to the root