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ONTOLOGY REPORT - ANNOTATIONS

Term:9+0 non-motile cilium
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Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium

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show annotations for term's descendants           Sort by:
9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap96 cilia and flagella associated protein 96 located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004624769:16,281,200...16,314,879
Ensembl chrNW_004624769:16,283,614...16,307,579 		JBrowse link
G CUNH1orf115 chromosome unknown C1orf115 homolog located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004624835:4,112,431...4,121,013 JBrowse link
G Dynll2 dynein light chain LC8-type 2 located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004624795:12,932,425...12,940,503
Ensembl chrNW_004624795:12,932,460...12,940,498 		JBrowse link
G Enkd1 enkurin domain containing 1 located_in ISO (PMID:29257953) MGI PMID:29257953 NCBI chrNW_004624746:18,676,146...18,686,739
Ensembl chrNW_004624746:18,682,597...18,686,735 		JBrowse link
G Ift80 intraflagellar transport 80 is_active_in
located_in		 ISO
IEA		 (PMID:26996322) MGI
Ensembl		 PMID:26996322 GO_REF:0000107 NCBI chrNW_004624730:38,003,437...38,144,312
Ensembl chrNW_004624730:38,003,902...38,144,277 		JBrowse link
G Iftap intraflagellar transport associated protein located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624767:10,604,914...10,678,207
Ensembl chrNW_004624767:10,604,254...10,678,224 		JBrowse link
G Phyh phytanoyl-CoA 2-hydroxylase located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004624805:5,801,392...5,813,696 JBrowse link
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin located_in ISO (PMID:24586199) MGI PMID:24586199 NCBI chrNW_004624855:4,019,088...4,539,289
Ensembl chrNW_004624855:4,019,056...4,536,324 		JBrowse link
G Smo smoothened, frizzled class receptor located_in ISO (PMID:26996322) MGI PMID:26996322 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921 		JBrowse link
G Ttll4 tubulin tyrosine ligase like 4 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004624823:6,314,177...6,352,236
Ensembl chrNW_004624823:6,310,738...6,352,333 		JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004624734:25,740,347...26,021,519 JBrowse link
G Ttll6 tubulin tyrosine ligase like 6 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004624795:5,226,094...5,249,956
Ensembl chrNW_004624795:5,222,844...5,250,688 		JBrowse link
G Ttll7 tubulin tyrosine ligase like 7 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004624742:13,426,552...13,606,398
Ensembl chrNW_004624742:13,508,064...13,602,643 		JBrowse link
G Tulp3 TUB like protein 3 located_in ISO (PMID:20889716) MGI PMID:20889716 NCBI chrNW_004624860:232,838...301,299
Ensembl chrNW_004624860:232,936...299,225 		JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chrNW_004624749:3,458,997...3,482,697
Ensembl chrNW_004624749:3,458,991...3,483,003 		JBrowse link
G Guca1a guanylate cyclase activator 1A located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:17,089,061...17,105,538
Ensembl chrNW_004624754:17,089,026...17,094,231 		JBrowse link
G Guca1b guanylate cyclase activator 1B located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:17,083,523...17,087,010
Ensembl chrNW_004624754:17,083,523...17,087,010 		JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (PMID:24619649) MGI PMID:24619649 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chrNW_004624783:7,412,825...7,416,209
Ensembl chrNW_004624783:7,412,825...7,416,095 		JBrowse link
G Pcare photoreceptor cilium actin regulator located_in ISO (PMID:25616964) MGI PMID:25616964 NCBI chrNW_004624738:10,948,502...10,962,353
Ensembl chrNW_004624738:10,953,896...10,962,103 		JBrowse link
G Prkca protein kinase C alpha located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chrNW_004624870:1,589,775...2,023,160
Ensembl chrNW_004624870:1,596,102...2,023,172 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (PMID:21078983) UniProt PMID:21078983 NCBI chrNW_004624807:815,027...824,294
Ensembl chrNW_004624807:816,429...824,210 		JBrowse link
G Slc24a4 solute carrier family 24 member 4 located_in ISO (PMID:28650316) ARUK-UCL PMID:28650316 NCBI chrNW_004624734:8,911,376...9,069,054
Ensembl chrNW_004624734:8,911,455...9,063,063 		JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) MGI PMID:20375344 NCBI chrNW_004624899:209,810...239,404
Ensembl chrNW_004624899:206,878...238,737 		JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 located_in ISO (PMID:26373354) ARUK-UCL PMID:26373354 NCBI chrNW_004624794:1,068,056...1,108,303 JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624745:29,810,748...29,823,395
Ensembl chrNW_004624745:29,816,662...29,822,326 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in ISO (PMID:22791751) UniProt PMID:22791751 NCBI chrNW_004624833:83,089...107,979
Ensembl chrNW_004624833:83,038...99,909 		JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265 		JBrowse link
G Pex6 peroxisomal biogenesis factor 6 located_in ISO (PMID:26593283) UniProt PMID:26593283 NCBI chrNW_004624754:16,510,980...16,534,695
Ensembl chrNW_004624754:16,510,795...16,527,859 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624735:1,129,333...1,179,387
Ensembl chrNW_004624735:1,093,929...1,179,265 		JBrowse link
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624771:15,898,172...16,116,013
Ensembl chrNW_004624771:15,896,661...16,115,375 		JBrowse link
G Ush1g USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:4,747,260...4,761,223
Ensembl chrNW_004624801:4,755,688...4,761,180 		JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:17906286) MGI PMID:17906286 NCBI chrNW_004624743:9,849,070...10,292,392 JBrowse link
G Alpk1 alpha kinase 1 located_in ISO (PMID:30967659) UniProt PMID:30967659 NCBI chrNW_004624838:6,273,398...6,288,363
Ensembl chrNW_004624838:6,229,899...6,287,920 		JBrowse link
G Arl3 ARF like GTPase 3 located_in ISO (PMID:12417528) UniProt PMID:12417528 NCBI chrNW_004624831:2,041,241...2,077,801
Ensembl chrNW_004624831:2,037,023...2,078,220 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chrNW_004624781:1,502,069...1,553,101
Ensembl chrNW_004624781:1,503,816...1,538,755 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:16632484), (PMID:16682973), (PMID:23943788) MGI PMID:16632484 PMID:16682973 PMID:23943788 NCBI chrNW_004624837:7,054,659...7,138,840
Ensembl chrNW_004624837:7,054,813...7,138,097 		JBrowse link
G Cetn1 centrin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624770:11,072,793...11,074,972
Ensembl chrNW_004624770:11,073,242...11,073,757 		JBrowse link
G Cetn2 centrin 2 located_in ISO (PMID:15347651) MGI PMID:15347651 NCBI chrNW_004624883:4,035,647...4,039,758
Ensembl chrNW_004624883:4,035,647...4,039,732 		JBrowse link
G Cetn3 centrin 3 located_in ISO (PMID:15347651), (PMID:22031837), (PMID:24833722) MGI PMID:15347651 PMID:22031837 PMID:24833722 NCBI chrNW_004624743:9,663,281...9,677,626
Ensembl chrNW_004624743:9,661,857...9,677,599 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:26974433) UniProt PMID:26974433 NCBI chrNW_004624745:29,810,748...29,823,395
Ensembl chrNW_004624745:29,816,662...29,822,326 		JBrowse link
G Fam161a FAM161 centrosomal protein A located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624833:83,089...107,979
Ensembl chrNW_004624833:83,038...99,909 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:4,064,982...4,072,172
Ensembl chrNW_004624730:4,066,222...4,071,316 		JBrowse link
G Ift122 intraflagellar transport 122 located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004624872:462,778...520,217
Ensembl chrNW_004624872:462,916...520,323 		JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (PMID:20368623), (PMID:24619649) MGI PMID:20368623 PMID:24619649 NCBI chrNW_004624913:616,283...712,040
Ensembl chrNW_004624913:621,203...711,493 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:31637240)
(PMID:21307337)		 UniProt
MGI		 PMID:21307337 PMID:31637240 NCBI chrNW_004624786:928,123...939,515 JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (PMID:31637240)
(PMID:20368623)		 UniProt
MGI		 PMID:20368623 PMID:31637240 NCBI chrNW_004624790:10,674,002...10,726,292
Ensembl chrNW_004624790:10,678,911...10,726,265 		JBrowse link
G Ift57 intraflagellar transport 57 located_in ISO (PMID:31637240)
(PMID:20368623)		 UniProt
MGI		 PMID:20368623 PMID:31637240 NCBI chrNW_004624731:41,321,574...41,390,133
Ensembl chrNW_004624731:41,322,033...41,388,570 		JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (PMID:19208653), (PMID:20368623) MGI PMID:19208653 PMID:20368623 NCBI chrNW_004624776:16,954,368...17,086,377
Ensembl chrNW_004624776:16,954,507...17,086,337 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624912:56,209...112,766
Ensembl chrNW_004624912:56,946...113,438 		JBrowse link
G Kiaa1549 KIAA1549 ortholog located_in ISO (PMID:30120214) UniProt PMID:30120214 NCBI chrNW_004624765:19,251,748...19,441,120
Ensembl chrNW_004624765:19,277,147...19,440,207 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) MGI PMID:19384852 NCBI chrNW_004624764:5,682,800...5,724,852
Ensembl chrNW_004624764:5,682,829...5,724,656 		JBrowse link
G Kif3a kinesin family member 3A located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004624733:39,354,360...39,406,574
Ensembl chrNW_004624733:39,354,232...39,407,121 		JBrowse link
G Kifap3 kinesin associated protein 3 located_in ISO (PMID:19384852) MGI PMID:19384852 NCBI chrNW_004624805:10,381,217...10,521,349
Ensembl chrNW_004624805:10,416,095...10,504,234 		JBrowse link
G Lca5 lebercilin LCA5 located_in ISO (PMID:21606596)
PMID:17546029		 UniProt PMID:17546029 PMID:21606596 RGD:14397561 NCBI chrNW_004624819:6,143,586...6,199,436
Ensembl chrNW_004624819:6,141,740...6,199,624 		JBrowse link
G LOC101698489 centrosomal protein POC5 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624869:141,258...178,392 JBrowse link
G LOC101725169 centrosomal protein POC5 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624905:2,678,562...2,693,966 JBrowse link
G Mak male germ cell associated kinase located_in ISO (PMID:21148103) MGI PMID:21148103 NCBI chrNW_004624756:15,119,788...15,167,815
Ensembl chrNW_004624756:15,119,788...15,168,680 		JBrowse link
G Myo7a myosin VIIA located_in ISO (PMID:10414956) MGI PMID:10414956 NCBI chrNW_004624863:205,468...283,840
Ensembl chrNW_004624863:205,478...283,839 		JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (PMID:16885411) UniProt PMID:16885411 NCBI chrNW_004624749:1,725,515...1,779,787
Ensembl chrNW_004624749:1,725,598...1,779,344 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:21078623) MGI PMID:21078623 NCBI chrNW_004624818:5,325,946...5,432,290
Ensembl chrNW_004624818:5,327,038...5,432,901 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:11767049)
(PMID:11773008), (PMID:14507858)		 MGI
UniProt		 PMID:11767049 PMID:11773008 PMID:14507858 NCBI chrNW_004624735:1,129,333...1,179,387
Ensembl chrNW_004624735:1,093,929...1,179,265 		JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chrNW_004624758:24,480,805...24,516,524 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:10725384) MGI PMID:10725384 NCBI chrNW_004624762:17,135,870...17,199,693 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624825:7,289,385...7,366,388
Ensembl chrNW_004624825:7,296,662...7,366,196 		JBrowse link
G Rpgrip1l RPGRIP1 like located_in ISO
IEA		 RGD
TreeGrafter		 PMID:17558407 GO_REF:0000118 RGD:11537356 NCBI chrNW_004624757:3,080,162...3,172,750
Ensembl chrNW_004624757:3,079,712...3,172,115 		JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004624847:5,341,177...5,382,920
Ensembl chrNW_004624847:5,341,467...5,385,065 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in ISO (PMID:25398945) UniProt PMID:25398945 NCBI chrNW_004624734:13,869,210...13,943,864
Ensembl chrNW_004624734:13,879,522...13,943,703 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 located_in ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004624804:9,031,945...9,049,601 JBrowse link
G Tbcc tubulin folding cofactor C located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:16,675,439...16,677,047 JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) MGI PMID:20375344 NCBI chrNW_004624899:209,810...239,404
Ensembl chrNW_004624899:206,878...238,737 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624736:37,209,709...37,221,921
Ensembl chrNW_004624736:37,210,291...37,221,747 		JBrowse link
G Tsga10ip testis specific 10 interacting protein located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:20,469,228...20,478,733 JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 located_in ISO (PMID:14520415) BHF-UCL PMID:14520415 NCBI chrNW_004624734:13,437,234...13,497,269
Ensembl chrNW_004624734:13,437,221...13,497,510 		JBrowse link
G Ush1g USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624801:4,747,260...4,761,223
Ensembl chrNW_004624801:4,755,688...4,761,180 		JBrowse link
G Ush2a usherin located_in ISO (PMID:17906286), (PMID:21212183) RGD
MGI		 PMID:16434480 PMID:17906286 PMID:21212183 RGD:1600128 NCBI chrNW_004624835:48,213...758,640
Ensembl chrNW_004624835:49,877...758,640 		JBrowse link
G Wdr19 WD repeat domain 19 located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004624840:7,624,744...7,702,283
Ensembl chrNW_004624840:7,624,687...7,699,997 		JBrowse link
G Whrn whirlin located_in ISO (PMID:17906286), (PMID:21212183) RGD
MGI		 PMID:16434480 PMID:17906286 PMID:21212183 RGD:1600128 NCBI chrNW_004624760:20,700,632...20,788,628
Ensembl chrNW_004624760:20,700,593...20,788,628 		JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in ISO (PMID:25664179) UniProt PMID:25664179 NCBI chrNW_004624872:523,892...528,278
Ensembl chrNW_004624872:523,912...527,615 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 located_in ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004624804:9,031,945...9,049,601 JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624837:7,054,659...7,138,840
Ensembl chrNW_004624837:7,054,813...7,138,097 		JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624749:1,725,515...1,779,787
Ensembl chrNW_004624749:1,725,598...1,779,344 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624818:5,325,946...5,432,290
Ensembl chrNW_004624818:5,327,038...5,432,901 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624762:17,135,870...17,199,693 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624825:7,289,385...7,366,388
Ensembl chrNW_004624825:7,296,662...7,366,196 		JBrowse link
G Spata7 spermatogenesis associated 7 is_active_in
located_in		 ISO
IEA		 (PMID:29899041) MGI
TreeGrafter		 PMID:29899041 GO_REF:0000118 NCBI chrNW_004624734:13,869,210...13,943,864
Ensembl chrNW_004624734:13,879,522...13,943,703 		JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 located_in ISO (PMID:23943788), (PMID:9202155) UniProt PMID:9202155 PMID:23943788 NCBI chrNW_004624742:3,536,591...3,661,706
Ensembl chrNW_004624742:3,536,591...3,661,468 		JBrowse link
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:20592197) MGI PMID:20592197 NCBI chrNW_004624886:2,189,753...2,403,174
Ensembl chrNW_004624886:2,189,655...2,397,364 		JBrowse link
G Arr3 arrestin 3 located_in ISO (PMID:10725384), (PMID:12486395) MGI PMID:10725384 PMID:12486395 NCBI chrNW_004624903:246,888...255,169 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chrNW_004624781:1,502,069...1,553,101
Ensembl chrNW_004624781:1,503,816...1,538,755 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624777:2,105,122...2,151,399
Ensembl chrNW_004624777:2,104,765...2,151,402 		JBrowse link
G Bsg basigin (Ok blood group) located_in ISO (PMID:25957687) UniProt PMID:25957687 NCBI chrNW_004624828:7,913,297...7,920,891
Ensembl chrNW_004624828:7,913,099...7,920,804 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO RGD PMID:11526344 RGD:632484 NCBI chrNW_004624893:945,378...968,041
Ensembl chrNW_004624893:945,436...970,431 		JBrowse link
G Cep250 centrosomal protein 250 located_in ISO (PMID:28005958) UniProt PMID:28005958 NCBI chrNW_004624842:3,900,685...3,947,241
Ensembl chrNW_004624842:3,901,172...3,939,526 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chrNW_004624837:7,054,659...7,138,840
Ensembl chrNW_004624837:7,054,813...7,138,097 		JBrowse link
G Cerkl CERK like autophagy regulator located_in ISO (PMID:23142158) MGI PMID:23142158 NCBI chrNW_004624844:3,354,823...3,474,036 JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:27548899) UniProt PMID:27548899 NCBI chrNW_004624745:29,810,748...29,823,395
Ensembl chrNW_004624745:29,816,662...29,822,326 		JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624894:2,688,784...2,704,742
Ensembl chrNW_004624894:2,688,814...2,704,747 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:10725384), (PMID:15634774), (PMID:20592197) MGI PMID:10725384 PMID:15634774 PMID:20592197 NCBI chrNW_004624761:18,992,372...19,004,247
Ensembl chrNW_004624761:18,992,384...19,004,202 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:15634774) MGI PMID:15634774 NCBI chrNW_004624749:3,458,997...3,482,697
Ensembl chrNW_004624749:3,458,991...3,483,003 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:28,198,324...28,268,280 JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624744:5,059,957...5,209,144
Ensembl chrNW_004624744:5,042,494...5,207,818 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 located_in ISO (PMID:15316081) MGI PMID:15316081 NCBI chrNW_004624798:2,861,481...2,999,387
Ensembl chrNW_004624798:2,861,520...2,999,697 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:10396627 PMID:11931744 GO_REF:0000107 RGD:1599009 RGD:6893629 NCBI chrNW_004624730:4,064,982...4,072,172
Ensembl chrNW_004624730:4,066,222...4,071,316 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 located_in ISO
IEA		 RGD
TreeGrafter		 PMID:17591908 GO_REF:0000118 RGD:2302146 NCBI chrNW_004624772:5,317,702...5,326,841
Ensembl chrNW_004624772:5,318,113...5,326,841 		JBrowse link
G Gnb1 G protein subunit beta 1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624818:7,937,061...8,002,798
Ensembl chrNW_004624818:7,936,932...8,003,433 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO RGD PMID:10396627 PMID:11931744 RGD:1599009 RGD:6893629 NCBI chrNW_004624813:579,173...594,039
Ensembl chrNW_004624813:590,580...594,085 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004624793:453,125...462,053
Ensembl chrNW_004624793:453,125...462,053 		JBrowse link
G Guca1a guanylate cyclase activator 1A located_in ISO (PMID:22183407) RGD
MGI		 PMID:9620085 PMID:22183407 RGD:1599354 NCBI chrNW_004624754:17,089,061...17,105,538
Ensembl chrNW_004624754:17,089,026...17,094,231 		JBrowse link
G Guca1b guanylate cyclase activator 1B located_in ISO (PMID:22183407) RGD
MGI		 PMID:9620085 PMID:22183407 RGD:1599354 NCBI chrNW_004624754:17,083,523...17,087,010
Ensembl chrNW_004624754:17,083,523...17,087,010 		JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in ISO (PMID:7912093) UniProt PMID:7912093 NCBI chrNW_004624786:10,574,252...10,589,303
Ensembl chrNW_004624786:10,574,968...10,588,540 		JBrowse link
G Hnf1a HNF1 homeobox A located_in ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004624747:12,717,713...12,746,040
Ensembl chrNW_004624747:12,717,707...12,746,724 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:21307337) MGI PMID:21307337 NCBI chrNW_004624786:928,123...939,515 JBrowse link
G Impg1 interphotoreceptor matrix proteoglycan 1 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624819:3,002,718...3,030,007 JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624789:15,056,692...15,184,385
Ensembl chrNW_004624789:15,060,525...15,175,617 		JBrowse link
G Inha inhibin subunit alpha ISO RGD PMID:7596220 RGD:2290440 NCBI chrNW_004624823:5,487,930...5,491,447
Ensembl chrNW_004624823:5,487,278...5,491,635 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624912:56,209...112,766
Ensembl chrNW_004624912:56,946...113,438 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) MGI PMID:19384852 NCBI chrNW_004624764:5,682,800...5,724,852
Ensembl chrNW_004624764:5,682,829...5,724,656 		JBrowse link
G Kifap3 kinesin associated protein 3 located_in ISO (PMID:19384852) MGI PMID:19384852 NCBI chrNW_004624805:10,381,217...10,521,349
Ensembl chrNW_004624805:10,416,095...10,504,234 		JBrowse link
G Lyar Ly1 antibody reactive located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624755:21,434,144...21,450,124 JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISO (PMID:24608321) UniProt PMID:24608321 NCBI chrNW_004624739:27,132,533...28,430,765
Ensembl chrNW_004624739:27,134,993...28,430,686 		JBrowse link
G Mak male germ cell associated kinase located_in ISO (PMID:21148103) MGI PMID:21148103 NCBI chrNW_004624756:15,119,788...15,167,815
Ensembl chrNW_004624756:15,119,788...15,168,680 		JBrowse link
G Map1a microtubule associated protein 1A located_in ISO (PMID:24664738) MGI PMID:24664738 NCBI chrNW_004624804:10,611,657...10,632,199
Ensembl chrNW_004624804:10,611,672...10,630,881 		JBrowse link
G Map1b microtubule associated protein 1B located_in ISO (PMID:24664738) MGI PMID:24664738 NCBI chrNW_004624905:1,198,157...1,304,128
Ensembl chrNW_004624905:1,198,205...1,304,309 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO RGD PMID:11861639 RGD:1299193 NCBI chrNW_004624749:337,441...444,730
Ensembl chrNW_004624749:341,289...443,640 		JBrowse link
G Myo3b myosin IIIB located_in ISO (PMID:19332056) MGI PMID:19332056 NCBI chrNW_004624787:7,723,491...7,915,619
Ensembl chrNW_004624787:7,685,741...8,130,810 		JBrowse link
G Myo5a myosin VA located_in ISO (PMID:14978221) MGI PMID:14978221 NCBI chrNW_004624731:8,114,557...8,280,586
Ensembl chrNW_004624731:8,113,715...8,280,823 		JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in		 ISO (PMID:8842737) UniProt PMID:8842737 NCBI chrNW_004624863:205,468...283,840
Ensembl chrNW_004624863:205,478...283,839 		JBrowse link
G Myrip myosin VIIA and Rab interacting protein located_in ISO (PMID:11964381) UniProt PMID:11964381 NCBI chrNW_004624730:78,388,192...78,582,051 JBrowse link
G Nup42 nucleoporin 42 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004624739:7,426,410...7,458,975
Ensembl chrNW_004624739:7,426,476...7,458,834 		JBrowse link
G Ocrl OCRL inositol polyphosphate-5-phosphatase located_in ISO (PMID:22543976) UniProt PMID:22543976 NCBI chrNW_004624797:8,731,130...8,792,300
Ensembl chrNW_004624797:8,730,713...8,792,727 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in ISO (PMID:10725384), (PMID:12651948), (PMID:19332056), (PMID:22183407), (PMID:23351594), (PMID:23386608), (PMID:26420485) RGD
MGI		 PMID:10725384 PMID:12651948 PMID:19332056 PMID:20209167 PMID:22183407 More... RGD:6893562 NCBI chrNW_004624783:7,412,825...7,416,209
Ensembl chrNW_004624783:7,412,825...7,416,095 		JBrowse link
G Pcare photoreceptor cilium actin regulator located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624738:10,948,502...10,962,353
Ensembl chrNW_004624738:10,953,896...10,962,103 		JBrowse link
G Pcdh15 protocadherin related 15 located_in ISO (PMID:14570705) HGNC-UCL
MGI		 PMID:14570705 NCBI chrNW_004624791:9,042,311...9,992,341
Ensembl chrNW_004624791:9,195,902...9,990,131 		JBrowse link
G Pdc phosducin located_in IEA UniProt
TreeGrafter		 GO_REF:0000044 GO_REF:0000118 NCBI chrNW_004624814:7,150,941...7,198,327
Ensembl chrNW_004624814:7,190,805...7,198,229 		JBrowse link
G Pde6b phosphodiesterase 6B located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004624755:26,372,040...26,413,464
Ensembl chrNW_004624755:26,372,072...26,413,381 		JBrowse link
G Prcd photoreceptor disc component located_in ISO (PMID:23672200) HGNC PMID:23672200 NCBI chrNW_004624801:6,398,044...6,409,985
Ensembl chrNW_004624801:6,398,103...6,408,024 		JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:19228982) UniProt PMID:19228982 NCBI chrNW_004624755:15,765,162...15,886,023
Ensembl chrNW_004624755:15,771,286...15,886,348 		JBrowse link
G Prph peripherin located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004624816:2,873,689...2,877,335
Ensembl chrNW_004624816:2,873,690...2,877,238 		JBrowse link
G Prph2 peripherin 2 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chrNW_004624754:16,685,512...16,699,145
Ensembl chrNW_004624754:16,685,378...16,700,111 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 located_in ISO (PMID:12355421) MGI PMID:12355421 NCBI chrNW_004624760:12,917,244...12,937,858
Ensembl chrNW_004624760:12,915,206...12,937,824 		JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K located_in ISO (PMID:18308476) MGI PMID:18308476 NCBI chrNW_004624753:2,357,800...2,878,176
Ensembl chrNW_004624753:2,357,680...2,877,981 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family located_in ISO (PMID:11964381) UniProt PMID:11964381 NCBI chrNW_004624731:6,315,064...6,355,431
Ensembl chrNW_004624731:6,319,092...6,355,534 		JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:19883736 RGD:2314691 NCBI chrNW_004624787:10,062,677...10,369,132
Ensembl chrNW_004624787:10,062,717...10,369,632 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (PMID:29515371) UniProt PMID:29515371 NCBI chrNW_004624807:815,027...824,294
Ensembl chrNW_004624807:816,429...824,210 		JBrowse link
G Rho rhodopsin located_in ISO
IEA		 RGD
UniProt		 PMID:8814134 GO_REF:0000044 RGD:6893595 NCBI chrNW_004624872:523,892...528,278
Ensembl chrNW_004624872:523,912...527,615 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624926:1,140,082...1,142,434
Ensembl chrNW_004624926:1,140,793...1,142,253 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:14507858), (PMID:15269252) UniProt PMID:14507858 PMID:15269252 NCBI chrNW_004624735:1,129,333...1,179,387
Ensembl chrNW_004624735:1,093,929...1,179,265 		JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chrNW_004624758:24,480,805...24,516,524 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) UniProt PMID:12140192 NCBI chrNW_004624762:17,135,870...17,199,693 JBrowse link
G Sag S-antigen visual arrestin located_in ISO
IEA		 RGD
TreeGrafter		 PMID:10396627 GO_REF:0000118 RGD:6893629 NCBI chrNW_004624843:5,837,105...5,870,417
Ensembl chrNW_004624843:5,844,823...5,870,300 		JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 located_in ISO (PMID:19299912) BHF-UCL PMID:19299912 NCBI chrNW_004624767:16,296,053...16,828,714
Ensembl chrNW_004624767:16,380,751...16,823,577 		JBrowse link
G Stx3 syntaxin 3 located_in ISO (PMID:33974130) UniProt PMID:33974130 NCBI chrNW_004624864:1,054,130...1,091,071
Ensembl chrNW_004624864:1,054,284...1,090,398 		JBrowse link
G Tulp1 TUB like protein 1 located_in ISO (PMID:19218615) UniProt PMID:19218615 NCBI chrNW_004624754:21,961,513...21,971,362 JBrowse link
G Ush1c USH1 protein network component harmonin located_in ISO (PMID:14578428), (PMID:17906286) RGD
MGI		 PMID:14578428 PMID:17906286 RGD:1303964 NCBI chrNW_004624766:9,097,466...9,153,602
Ensembl chrNW_004624766:9,105,990...9,153,663 		JBrowse link
G Vcan versican located_in IEA UniProt GO_REF:0000044 NCBI chrNW_004624743:3,635,086...3,743,332 JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr1 cadherin related family member 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004624841:2,820,543...2,838,998
Ensembl chrNW_004624841:2,820,546...2,839,005 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004624761:18,992,372...19,004,247
Ensembl chrNW_004624761:18,992,384...19,004,202 		JBrowse link
G Gnb1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004624818:7,937,061...8,002,798
Ensembl chrNW_004624818:7,936,932...8,003,433 		JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in ISO PMID:9153227
(PMID:21598940)		 UniProt PMID:9153227 PMID:21598940 RGD:1599625 NCBI chrNW_004624786:10,574,252...10,589,303
Ensembl chrNW_004624786:10,574,968...10,588,540 		JBrowse link
G Pde6g phosphodiesterase 6G located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:10,597,722...10,602,784
Ensembl chrNW_004624801:10,597,860...10,601,811 		JBrowse link
G Pde6h phosphodiesterase 6H located_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:23,051,486...23,055,128
Ensembl chrNW_004624752:23,051,752...23,055,103 		JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20089132 RGD:5131540 NCBI chrNW_004624746:13,917,070...13,994,212
Ensembl chrNW_004624746:13,919,557...13,994,182 		JBrowse link
G Prcd photoreceptor disc component located_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624801:6,398,044...6,409,985
Ensembl chrNW_004624801:6,398,103...6,408,024 		JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004624755:15,765,162...15,886,023
Ensembl chrNW_004624755:15,771,286...15,886,348 		JBrowse link
G Prph peripherin located_in ISO (PMID:10414956) MGI PMID:10414956 NCBI chrNW_004624816:2,873,689...2,877,335
Ensembl chrNW_004624816:2,873,690...2,877,238 		JBrowse link
G Rdh11 retinol dehydrogenase 11 NOT|located_in ISO (PMID:15790565) MGI PMID:15790565 NCBI chrNW_004624734:33,283,336...33,295,797
Ensembl chrNW_004624734:33,283,497...33,295,091 		JBrowse link
G Rho rhodopsin located_in ISO (PMID:19934218) RGD
UniProt		 PMID:2209754 PMID:19934218 RGD:6893561 NCBI chrNW_004624872:523,892...528,278
Ensembl chrNW_004624872:523,912...527,615 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004624926:1,140,082...1,142,434
Ensembl chrNW_004624926:1,140,793...1,142,253 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624837:7,054,659...7,138,840
Ensembl chrNW_004624837:7,054,813...7,138,097 		JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 located_in ISO (PMID:26373354) ARUK-UCL PMID:26373354 NCBI chrNW_004624794:1,068,056...1,108,303 JBrowse link
G Cep290 centrosomal protein 290 is_active_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004624837:7,054,659...7,138,840
Ensembl chrNW_004624837:7,054,813...7,138,097 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:22802073) UniProt PMID:22802073 NCBI chrNW_004624761:18,992,372...19,004,247
Ensembl chrNW_004624761:18,992,384...19,004,202 		JBrowse link
G Gucy2f guanylate cyclase 2F, retinal located_in ISO (PMID:21078983) UniProt PMID:21078983 NCBI chrNW_004624803:6,510,264...6,683,046
Ensembl chrNW_004624803:6,509,114...6,683,046 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (PMID:21078983) UniProt PMID:21078983 NCBI chrNW_004624807:815,027...824,294
Ensembl chrNW_004624807:816,429...824,210 		JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein located_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624794:7,545,832...7,552,478
Ensembl chrNW_004624794:7,545,852...7,546,559 		JBrowse link
G Rho rhodopsin located_in ISO (PMID:19332056), (PMID:21444805), (PMID:23178122) MGI PMID:19332056 PMID:21444805 PMID:23178122 NCBI chrNW_004624872:523,892...528,278
Ensembl chrNW_004624872:523,912...527,615 		JBrowse link
G Spata7 spermatogenesis associated 7 is_active_in
located_in		 ISO
IEA		 (PMID:29899041) MGI
TreeGrafter		 PMID:29899041 GO_REF:0000118 NCBI chrNW_004624734:13,869,210...13,943,864
Ensembl chrNW_004624734:13,879,522...13,943,703 		JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) MGI PMID:20375344 NCBI chrNW_004624899:209,810...239,404
Ensembl chrNW_004624899:206,878...238,737 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18619
    cellular anatomical structure 18486
      cell projection 2529
        plasma membrane bounded cell projection 2468
          cilium 947
            non-motile cilium 172
              9+0 non-motile cilium 129
                photoreceptor cell cilium + 115
paths to the root