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ONTOLOGY REPORT - ANNOTATIONS

Term:9+0 non-motile cilium
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Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium


show annotations for term's descendants           Sort by:
9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1orf115 chromosome 1 open reading frame 115 located_in IDA (PMID:29257953) GO_Central PMID:29257953 NCBI chr 1:220,690,363...220,699,153
Ensembl chr 1:220,690,363...220,699,153 		JBrowse link
G CFAP96 cilia and flagella associated protein 96 located_in IDA (PMID:29257953) GO_Central PMID:29257953 NCBI chr 4:185,408,434...185,449,826
Ensembl chr 4:185,426,249...185,449,826 		JBrowse link
G DYNLL2 dynein light chain LC8-type 2 located_in IDA (PMID:29257953) GO_Central PMID:29257953 NCBI chr17:58,083,419...58,095,542
Ensembl chr17:58,083,419...58,095,542 		JBrowse link
G ENKD1 enkurin domain containing 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:67,662,945...67,666,750
Ensembl chr16:67,662,945...67,667,265 		JBrowse link
G IFT80 intraflagellar transport 80 located_in
is_active_in		 IEA
ISO		 (PMID:26996322) Ensembl
MGI		 PMID:26996322 GO_REF:0000107 NCBI chr 3:160,256,986...160,399,225
Ensembl chr 3:160,256,986...160,399,880 		JBrowse link
G IFTAP intraflagellar transport associated protein located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:36,594,502...36,659,272
Ensembl chr11:36,594,369...36,675,695 		JBrowse link
G PHYH phytanoyl-CoA 2-hydroxylase located_in IDA (PMID:29257953) GO_Central PMID:29257953 NCBI chr10:13,277,799...13,300,064
Ensembl chr10:13,277,796...13,302,412 		JBrowse link
G PKHD1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:51,615,299...52,087,615
Ensembl chr 6:51,615,299...52,087,613 		JBrowse link
G SMO smoothened, frizzled class receptor located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:129,188,633...129,213,545
Ensembl chr 7:129,188,633...129,213,545 		JBrowse link
G TTLL4 tubulin tyrosine ligase like 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:218,710,835...218,759,724
Ensembl chr 2:218,710,835...218,755,416 		JBrowse link
G TTLL5 tubulin tyrosine ligase like 5 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chr14:75,661,246...75,955,079
Ensembl chr14:75,633,625...75,955,079 		JBrowse link
G TTLL6 tubulin tyrosine ligase like 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:48,762,234...48,817,229
Ensembl chr17:48,762,234...48,817,229 		JBrowse link
G TTLL7 tubulin tyrosine ligase like 7 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chr 1:83,865,024...83,999,132
Ensembl chr 1:83,865,024...83,999,150 		JBrowse link
G TULP3 TUB like protein 3 located_in IDA (PMID:20889716) MGI PMID:20889716 NCBI chr12:2,890,891...2,941,138
Ensembl chr12:2,877,223...2,941,138 		JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chr 2:98,346,456...98,398,601
Ensembl chr 2:98,346,188...98,398,601 		JBrowse link
G GUCA1A guanylate cyclase activator 1A located_in
is_active_in		 IEA
IBA
IDA		 (PMID:9620085) Ensembl
GO_Central
UniProt		 PMID:9620085 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:42,173,364...42,180,056
Ensembl chr 6:42,173,364...42,181,338 		JBrowse link
G GUCA1ANB-GUCA1A GUCA1ANB-GUCA1A readthrough located_in
is_active_in		 IDA
IBA
IEA		 (PMID:9620085) UniProt
GO_Central
Ensembl		 PMID:9620085 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:42,155,406...42,180,056
Ensembl chr 6:42,155,406...42,180,056 		JBrowse link
G GUCA1B guanylate cyclase activator 1B located_in
is_active_in		 IDA
IBA		 (PMID:9620085) UniProt
GO_Central		 PMID:9620085 GO_REF:0000033 NCBI chr 6:42,183,284...42,194,956
Ensembl chr 6:42,183,284...42,194,956 		JBrowse link
G IFT140 intraflagellar transport 140 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,510,427...1,612,072
Ensembl chr16:1,510,427...1,612,072 		JBrowse link
G OPN1SW opsin 1, short wave sensitive located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,485...128,775,794 		JBrowse link
G PCARE photoreceptor cilium actin regulator located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:29,061,695...29,074,523
Ensembl chr 2:29,060,976...29,074,523 		JBrowse link
G PRKCA protein kinase C alpha located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chr17:66,302,613...66,810,743
Ensembl chr17:66,302,613...66,810,743 		JBrowse link
G RD3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:211,476,522...211,492,162
Ensembl chr 1:211,476,522...211,492,162 		JBrowse link
G SLC24A4 solute carrier family 24 member 4 located_in IEA
ISS		 Ensembl
ARUK-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:92,322,581...92,501,481
Ensembl chr14:92,322,581...92,501,481 		JBrowse link
G TMEM237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:201,620,186...201,643,503
Ensembl chr 2:201,620,184...201,643,570 		JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A4 ATPase Na+/K+ transporting subunit alpha 4 located_in IDA (PMID:26373354) ARUK-UCL PMID:26373354 NCBI chr 1:160,151,603...160,186,980
Ensembl chr 1:160,151,586...160,186,980 		JBrowse link
G CFAP410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chr21:44,328,944...44,339,390
Ensembl chr21:44,328,944...44,339,402 		JBrowse link
G FAM161A FAM161 centrosomal protein A located_in ISO (PMID:22791751) UniProt PMID:22791751 NCBI chr 2:61,800,240...61,854,060
Ensembl chr 2:61,824,848...61,854,143 		JBrowse link
G IFT52 intraflagellar transport 52 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:43,590,937...43,647,299
Ensembl chr20:43,590,937...43,647,299 		JBrowse link
G PEX6 peroxisomal biogenesis factor 6 located_in IEA
IDA		 (PMID:26593283) Ensembl
UniProt		 PMID:26593283 GO_REF:0000107 NCBI chr 6:42,963,865...42,979,181
Ensembl chr 6:42,963,865...42,979,181 		JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G SDCCAG8 SHH signaling and ciliogenesis regulator SDCCAG8 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:243,256,041...243,500,091
Ensembl chr 1:243,256,034...243,500,091 		JBrowse link
G USH1G USH1 protein network component sans located_in IDA (PMID:31637240) UniProt PMID:31637240 NCBI chr17:74,916,083...74,923,255
Ensembl chr17:74,916,083...74,923,256 		JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRV1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:17906286) MGI PMID:17906286 NCBI chr 5:90,558,797...91,164,437
Ensembl chr 5:90,529,344...91,164,437 		JBrowse link
G ALPK1 alpha kinase 1 located_in ISO (PMID:30967659) UniProt PMID:30967659 NCBI chr 4:112,297,369...112,442,621
Ensembl chr 4:112,285,509...112,442,621 		JBrowse link
G ARL3 ARF like GTPase 3 located_in IDA (PMID:12417528) UniProt PMID:12417528 NCBI chr10:102,673,731...102,714,397
Ensembl chr10:102,673,731...102,714,397 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:72,686,207...72,738,473
Ensembl chr15:72,686,186...72,742,006 		JBrowse link
G CEP290 centrosomal protein 290 located_in ISS (PMID:16682973) UniProt PMID:16682973 NCBI chr12:88,049,016...88,142,088
Ensembl chr12:88,049,016...88,142,099 		JBrowse link
G CETN1 centrin 1 located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr18:580,380...582,114
Ensembl chr18:580,380...582,114 		JBrowse link
G CETN2 centrin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:152,826,994...152,830,757
Ensembl chr  X:152,826,994...152,830,757 		JBrowse link
G CETN3 centrin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:90,392,257...90,409,756
Ensembl chr 5:90,392,257...90,409,766 		JBrowse link
G CFAP410 cilia and flagella associated protein 410 located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr21:44,328,944...44,339,390
Ensembl chr21:44,328,944...44,339,402 		JBrowse link
G FAM161A FAM161 centrosomal protein A located_in
is_active_in		 IDA
IBA		 (PMID:22940612) UniProt
GO_Central		 PMID:22940612 GO_REF:0000033 NCBI chr 2:61,800,240...61,854,060
Ensembl chr 2:61,824,848...61,854,143 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G IFT122 intraflagellar transport 122 located_in ISS UniProt GO_REF:0000024 NCBI chr 3:129,440,224...129,520,507
Ensembl chr 3:129,429,607...129,520,510 		JBrowse link
G IFT140 intraflagellar transport 140 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:1,510,427...1,612,072
Ensembl chr16:1,510,427...1,612,072 		JBrowse link
G IFT20 intraflagellar transport 20 located_in IEA
IDA		 (PMID:31637240) Ensembl
UniProt		 PMID:31637240 GO_REF:0000107 NCBI chr17:28,328,326...28,335,472
Ensembl chr17:28,328,325...28,335,489 		JBrowse link
G IFT52 intraflagellar transport 52 located_in IEA
IDA		 (PMID:31637240) Ensembl
UniProt		 PMID:31637240 GO_REF:0000107 NCBI chr20:43,590,937...43,647,299
Ensembl chr20:43,590,937...43,647,299 		JBrowse link
G IFT57 intraflagellar transport 57 located_in IEA
IDA		 (PMID:31637240) Ensembl
UniProt		 PMID:31637240 GO_REF:0000107 NCBI chr 3:108,160,812...108,222,424
Ensembl chr 3:108,160,812...108,222,435 		JBrowse link
G IFT88 intraflagellar transport 88 located_in ISO (PMID:19208653), (PMID:20368623) MGI PMID:19208653 PMID:20368623 NCBI chr13:20,567,157...20,691,444
Ensembl chr13:20,567,138...20,691,444 		JBrowse link
G IQCB1 IQ motif containing B1 located_in IEA
IDA		 (PMID:15723066) Ensembl
HGNC-UCL		 PMID:15723066 GO_REF:0000107 NCBI chr 3:121,769,761...121,835,060
Ensembl chr 3:121,769,761...121,835,079 		JBrowse link
G KIAA1549 KIAA1549 located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:138,831,381...138,981,389
Ensembl chr 7:138,831,381...138,981,389 		JBrowse link
G KIF17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:20,661,630...20,718,007
Ensembl chr 1:20,664,014...20,718,017 		JBrowse link
G KIF3A kinesin family member 3A located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chr 5:132,688,812...132,737,546
Ensembl chr 5:132,692,628...132,737,638 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:169,921,329...170,085,184
Ensembl chr 1:169,921,326...170,085,208 		JBrowse link
G LCA5 lebercilin LCA5 located_in IEA
IDA		 (PMID:21606596) Ensembl
UniProt		 PMID:21606596 GO_REF:0000107 NCBI chr 6:79,484,991...79,538,782
Ensembl chr 6:79,484,991...79,537,458 		JBrowse link
G MAK male germ cell associated kinase located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:10,762,723...10,838,539
Ensembl chr 6:10,762,723...10,838,553 		JBrowse link
G MYO7A myosin VIIA located_in IEA Ensembl GO_REF:0000107 NCBI chr11:77,128,246...77,215,241
Ensembl chr11:77,128,246...77,215,241 		JBrowse link
G NPHP1 nephrocystin 1 located_in ISS UniProt GO_REF:0000024 NCBI chr 2:110,123,348...110,205,013
Ensembl chr 2:110,122,311...110,205,066 		JBrowse link
G NPHP4 nephrocystin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:5,862,811...5,992,425
Ensembl chr 1:5,862,811...5,992,473 		JBrowse link
G PCDHB13 protocadherin beta 13 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:141,213,919...141,218,979
Ensembl chr 5:141,213,919...141,218,979 		JBrowse link
G PCDHB15 protocadherin beta 15 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:141,245,395...141,249,365
Ensembl chr 5:141,245,395...141,249,365 		JBrowse link
G PCDHB8 protocadherin beta 8 located_in ISO (PMID:18279309) MGI PMID:18279309 NCBI chr 5:141,177,790...141,180,539
Ensembl chr 5:141,177,790...141,182,369 		JBrowse link
G POC5 POC5 centriolar protein is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 5:75,674,124...75,717,437
Ensembl chr 5:75,674,124...75,717,448 		JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IDA
IEA		 (PMID:11767049) MGI
Ensembl		 PMID:11767049 GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G RP1L1 RP1 like 1 located_in ISS UniProt GO_REF:0000024 NCBI chr 8:10,606,349...10,655,143
Ensembl chr 8:10,606,349...10,712,187 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in ISO (PMID:10725384) MGI PMID:10725384 NCBI chr  X:38,269,163...38,327,509
Ensembl chr  X:38,269,163...38,327,544 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 located_in
is_active_in		 IEA
IBA
ISS		 Ensembl
GO_Central
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:21,280,083...21,351,301
Ensembl chr14:21,280,083...21,351,301 		JBrowse link
G RPGRIP1L RPGRIP1 like is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:17558407 GO_REF:0000033 GO_REF:0000107 RGD:11537356 NCBI chr16:53,598,153...53,703,859
Ensembl chr16:53,598,153...53,703,938 		JBrowse link
G SEPTIN2 septin 2 located_in IDA (PMID:23572511) GO_Central PMID:23572511 NCBI chr 2:241,315,355...241,354,027
Ensembl chr 2:241,315,100...241,354,027 		JBrowse link
G SPATA7 spermatogenesis associated 7 located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr14:88,385,657...88,470,350
Ensembl chr14:88,384,924...88,470,350 		JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 located_in IDA (PMID:23704327) MGI PMID:23704327 NCBI chr15:41,848,146...41,894,053
Ensembl chr15:41,848,146...41,894,053 		JBrowse link
G TBCC tubulin folding cofactor C located_in IDA (PMID:12417528) UniProt PMID:12417528 NCBI chr 6:42,744,498...42,746,103
Ensembl chr 6:42,744,498...42,746,103 		JBrowse link
G TMEM237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:201,620,186...201,643,503
Ensembl chr 2:201,620,184...201,643,570 		JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in
is_active_in		 IDA
IBA
IEA		 (PMID:21159800) BHF-UCL
GO_Central
Ensembl		 PMID:21159800 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:32,540,544...32,552,586
Ensembl chr 9:32,540,544...32,552,586 		JBrowse link
G TSGA10IP testis specific 10 interacting protein is_active_in IBA GO_Central GO_REF:0000033 NCBI chr11:65,945,480...65,959,966
Ensembl chr11:65,945,480...65,959,966 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:88,824,153...88,881,079
Ensembl chr14:88,824,153...88,881,078 		JBrowse link
G USH1G USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chr17:74,916,083...74,923,255
Ensembl chr17:74,916,083...74,923,256 		JBrowse link
G USH2A usherin located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:215,622,891...216,423,448
Ensembl chr 1:215,622,891...216,423,448 		JBrowse link
G WDR19 WD repeat domain 19 located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:39,182,529...39,285,810
Ensembl chr 4:39,182,504...39,285,810 		JBrowse link
G WHRN whirlin located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:114,402,080...114,505,473
Ensembl chr 9:114,402,078...114,505,473 		JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 located_in TAS Reactome Reactome:R-HSA-1467466 Reactome:R-HSA-2466802 NCBI chr 1:93,992,834...94,121,148
Ensembl chr 1:93,992,834...94,121,148 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 located_in TAS Reactome Reactome:R-HSA-2485182 Reactome:R-HSA-2534087 Reactome:R-HSA-2584246 Reactome:R-HSA-74059 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNB1 G protein subunit beta 1 located_in TAS Reactome Reactome:R-HSA-2485182 NCBI chr 1:1,785,286...1,891,087
Ensembl chr 1:1,785,285...1,892,292 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 located_in TAS Reactome Reactome:R-HSA-2485182 Reactome:R-HSA-2530501 NCBI chr 7:93,906,567...93,911,265
Ensembl chr 7:93,591,573...93,911,265 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 located_in TAS Reactome Reactome:R-HSA-2581474 NCBI chr13:113,648,199...113,737,736
Ensembl chr13:113,667,219...113,737,736 		JBrowse link
G GRK4 G protein-coupled receptor kinase 4 located_in TAS Reactome Reactome:R-HSA-2581474 NCBI chr 4:2,963,571...3,040,760
Ensembl chr 4:2,963,571...3,040,760 		JBrowse link
G GRK7 G protein-coupled receptor kinase 7 located_in TAS Reactome Reactome:R-HSA-2581474 NCBI chr 3:141,749,984...141,819,352
Ensembl chr 3:141,763,408...141,819,352 		JBrowse link
G GUCA1A guanylate cyclase activator 1A located_in TAS Reactome Reactome:R-HSA-2586748 NCBI chr 6:42,173,364...42,180,056
Ensembl chr 6:42,173,364...42,181,338 		JBrowse link
G GUCA1ANB-GUCA1A GUCA1ANB-GUCA1A readthrough located_in TAS Reactome Reactome:R-HSA-2586748 NCBI chr 6:42,155,406...42,180,056
Ensembl chr 6:42,155,406...42,180,056 		JBrowse link
G GUCA1B guanylate cyclase activator 1B located_in TAS Reactome Reactome:R-HSA-2586748 NCBI chr 6:42,183,284...42,194,956
Ensembl chr 6:42,183,284...42,194,956 		JBrowse link
G GUCA1C guanylate cyclase activator 1C located_in TAS Reactome Reactome:R-HSA-2586748 NCBI chr 3:108,907,792...108,955,195
Ensembl chr 3:108,907,792...108,953,879 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in TAS Reactome Reactome:R-HSA-74885 NCBI chr17:8,002,615...8,020,342
Ensembl chr17:8,002,615...8,020,342 		JBrowse link
G GUCY2F guanylate cyclase 2F, retinal located_in TAS Reactome Reactome:R-HSA-74885 NCBI chr  X:109,372,906...109,482,086
Ensembl chr  X:109,372,906...109,482,086 		JBrowse link
G OPN1LW opsin 1, long wave sensitive located_in IEA
TAS		 UniProt
Reactome		 GO_REF:0000117 Reactome:R-HSA-2465917 Reactome:R-HSA-2465924 Reactome:R-HSA-2466085 Reactome:R-HSA-2466822 Reactome:R-HSA-419841 Reactome:R-HSA-420883 Reactome:R-HSA-8982637 Reactome:R-HSA-8982640 NCBI chr  X:154,144,243...154,159,032
Ensembl chr  X:154,144,243...154,159,032 		JBrowse link
G OPN1MW opsin 1, medium wave sensitive located_in IEA
TAS		 UniProt
Reactome		 GO_REF:0000117 Reactome:R-HSA-2465917 Reactome:R-HSA-2466085 Reactome:R-HSA-2466706 Reactome:R-HSA-419841 Reactome:R-HSA-420883 Reactome:R-HSA-8982637 Reactome:R-HSA-8982640 Reactome:R-HSA-9656893 NCBI chr  X:154,182,596...154,196,861
Ensembl chr  X:154,182,596...154,196,861 		JBrowse link
G OPN1MW2 opsin 1, medium wave sensitive 2 located_in IEA
TAS		 UniProt
Reactome		 GO_REF:0000117 Reactome:R-HSA-2465917 Reactome:R-HSA-2466085 Reactome:R-HSA-2466706 Reactome:R-HSA-419841 Reactome:R-HSA-420883 Reactome:R-HSA-8982637 Reactome:R-HSA-8982640 Reactome:R-HSA-9656893 NCBI chr  X:154,219,756...154,233,286
Ensembl chr  X:154,219,756...154,233,286 		JBrowse link
G OPN1MW3 opsin 1, medium wave sensitive 3 located_in IEA
TAS		 UniProt
Reactome		 GO_REF:0000117 Reactome:R-HSA-2465917 Reactome:R-HSA-2466085 Reactome:R-HSA-2466706 Reactome:R-HSA-419841 Reactome:R-HSA-420883 Reactome:R-HSA-8982637 Reactome:R-HSA-8982640 Reactome:R-HSA-9656893 NCBI chr  X:154,257,582...154,271,090
Ensembl chr  X:154,257,582...154,271,090 		JBrowse link
G OPN1SW opsin 1, short wave sensitive located_in TAS
IEA		 Reactome
UniProt		 GO_REF:0000117 Reactome:R-HSA-2465917 Reactome:R-HSA-2466085 Reactome:R-HSA-2466834 Reactome:R-HSA-419841 Reactome:R-HSA-420883 Reactome:R-HSA-8982637 Reactome:R-HSA-8982640 Reactome:R-HSA-9656891 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,485...128,775,794 		JBrowse link
G OPN4 opsin 4 located_in TAS
IEA		 Reactome
UniProt		 GO_REF:0000117 Reactome:R-HSA-379048 Reactome:R-HSA-419861 Reactome:R-HSA-749448 Reactome:R-HSA-749452 NCBI chr10:86,654,547...86,666,460
Ensembl chr10:86,654,518...86,666,460 		JBrowse link
G PCDHB13 protocadherin beta 13 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:141,213,919...141,218,979
Ensembl chr 5:141,213,919...141,218,979 		JBrowse link
G PCDHB8 protocadherin beta 8 located_in ISO (PMID:18279309) MGI PMID:18279309 NCBI chr 5:141,177,790...141,180,539
Ensembl chr 5:141,177,790...141,182,369 		JBrowse link
G PDE6A phosphodiesterase 6A located_in TAS Reactome Reactome:R-HSA-2584246 Reactome:R-HSA-74059 NCBI chr 5:149,857,953...149,944,793
Ensembl chr 5:149,857,953...149,944,793 		JBrowse link
G PDE6B phosphodiesterase 6B located_in TAS Reactome Reactome:R-HSA-2584246 Reactome:R-HSA-74059 NCBI chr 4:625,573...670,782
Ensembl chr 4:625,573...670,782 		JBrowse link
G PDE6G phosphodiesterase 6G located_in TAS Reactome Reactome:R-HSA-2584246 Reactome:R-HSA-74059 NCBI chr17:81,650,459...81,663,127
Ensembl chr17:81,650,459...81,663,112 		JBrowse link
G RHO rhodopsin located_in IDA
IEA
TAS		 (PMID:25664179) UniProt
Reactome		 PMID:25664179 GO_REF:0000117 Reactome:R-HSA-2454118 Reactome:R-HSA-2581474 Reactome:R-HSA-2632521 Reactome:R-HSA-419841 Reactome:R-HSA-420883 Reactome:R-HSA-74101 Reactome:R-HSA-74948 Reactome:R-HSA-8982637 Reactome:R-HSA-8982640 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 located_in IDA (PMID:23704327) MGI PMID:23704327 NCBI chr15:41,848,146...41,894,053
Ensembl chr15:41,848,146...41,894,053 		JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G CEP290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr12:88,049,016...88,142,088
Ensembl chr12:88,049,016...88,142,099 		JBrowse link
G NPHP1 nephrocystin 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr 2:110,123,348...110,205,013
Ensembl chr 2:110,122,311...110,205,066 		JBrowse link
G NPHP4 nephrocystin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:5,862,811...5,992,425
Ensembl chr 1:5,862,811...5,992,473 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr  X:38,269,163...38,327,509
Ensembl chr  X:38,269,163...38,327,544 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr14:21,280,083...21,351,301
Ensembl chr14:21,280,083...21,351,301 		JBrowse link
G SPATA7 spermatogenesis associated 7 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:88,385,657...88,470,350
Ensembl chr14:88,384,924...88,470,350 		JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 1:93,992,834...94,121,148
Ensembl chr 1:93,992,834...94,121,148 		JBrowse link
G AHI1 Abelson helper integration site 1 located_in ISO (PMID:20592197) MGI PMID:20592197 NCBI chr 6:135,283,532...135,497,740
Ensembl chr 6:135,283,407...135,498,434 		JBrowse link
G ARR3 arrestin 3 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr  X:70,268,334...70,281,883
Ensembl chr  X:70,268,305...70,281,840 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:72,686,207...72,738,473
Ensembl chr15:72,686,186...72,742,006 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:121,824,329...121,870,474
Ensembl chr 4:121,824,329...121,870,487 		JBrowse link
G BSG basigin (Ok blood group) located_in IEA
ISS		 UniProt GO_REF:0000024 GO_REF:0000044 NCBI chr19:571,283...583,493
Ensembl chr19:571,277...583,494 		JBrowse link
G CACNA1F calcium voltage-gated channel subunit alpha1 F located_in ISO
IEA		 RGD
Ensembl		 PMID:11526344 GO_REF:0000107 RGD:632484 NCBI chr  X:49,205,063...49,233,340
Ensembl chr  X:49,205,063...49,233,371 		JBrowse link
G CCDC66 coiled-coil domain containing 66 located_in IEA UniProt GO_REF:0000044 NCBI chr 3:56,557,156...56,621,837
Ensembl chr 3:56,557,161...56,621,837 		JBrowse link
G CEP250 centrosomal protein 250 located_in IEA
ISS		 UniProt GO_REF:0000024 GO_REF:0000044 NCBI chr20:35,455,165...35,519,280
Ensembl chr20:35,455,164...35,519,280 		JBrowse link
G CEP290 centrosomal protein 290 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chr12:88,049,016...88,142,088
Ensembl chr12:88,049,016...88,142,099 		JBrowse link
G CERKL CERK like autophagy regulator located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:181,536,672...181,657,105
Ensembl chr 2:181,535,041...181,680,665 		JBrowse link
G CFAP410 cilia and flagella associated protein 410 located_in IEA
IDA		 (PMID:27548899) UniProt PMID:27548899 GO_REF:0000044 NCBI chr21:44,328,944...44,339,390
Ensembl chr21:44,328,944...44,339,402 		JBrowse link
G CIB2 calcium and integrin binding family member 2 located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr15:78,104,606...78,131,535
Ensembl chr15:78,104,606...78,131,535 		JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:47,935,977...48,016,681
Ensembl chr 4:47,935,977...48,016,681 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:15634774) MGI PMID:15634774 NCBI chr 2:98,346,456...98,398,601
Ensembl chr 2:98,346,188...98,398,601 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128 		JBrowse link
G CNGB3 cyclic nucleotide gated channel subunit beta 3 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:86,574,179...86,743,634
Ensembl chr 8:86,553,977...86,743,675 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr 1:197,201,504...197,478,455
Ensembl chr 1:197,268,204...197,478,455 		JBrowse link
G EYS eyes shut homolog located_in IEA UniProt GO_REF:0000044 NCBI chr 6:63,719,980...65,707,226
Ensembl chr 6:63,719,980...65,707,226 		JBrowse link
G GNA11 G protein subunit alpha 11 located_in ISS AgBase GO_REF:0000024 NCBI chr19:3,094,362...3,123,999
Ensembl chr19:3,094,362...3,123,999 		JBrowse link
G GNAQ G protein subunit alpha q located_in ISS AgBase GO_REF:0000024 NCBI chr 9:77,716,097...78,031,811
Ensembl chr 9:77,716,097...78,031,811 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 located_in ISO
IEA
IDA		 (PMID:2534964) RGD
Ensembl
UniProt		 PMID:2534964 PMID:10396627 PMID:11931744 GO_REF:0000044 GO_REF:0000107 RGD:1599009 RGD:6893629 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 located_in
is_active_in		 ISO
IEA
IBA
IDA
ISS		 (PMID:2534964) RGD
Ensembl
GO_Central
UniProt		 PMID:2534964 PMID:17591908 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 RGD:2302146 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G GNB1 G protein subunit beta 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:1,785,286...1,891,087
Ensembl chr 1:1,785,285...1,892,292 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:10396627 PMID:11931744 GO_REF:0000107 RGD:1599009 RGD:6893629 NCBI chr 7:93,906,567...93,911,265
Ensembl chr 7:93,591,573...93,911,265 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 located_in IEA UniProt GO_REF:0000044 NCBI chr13:113,648,199...113,737,736
Ensembl chr13:113,667,219...113,737,736 		JBrowse link
G GUCA1A guanylate cyclase activator 1A located_in ISO
IEA		 RGD
Ensembl
UniProt		 PMID:9620085 GO_REF:0000044 GO_REF:0000107 RGD:1599354 NCBI chr 6:42,173,364...42,180,056
Ensembl chr 6:42,173,364...42,181,338 		JBrowse link
G GUCA1ANB-GUCA1A GUCA1ANB-GUCA1A readthrough located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr 6:42,155,406...42,180,056
Ensembl chr 6:42,155,406...42,180,056 		JBrowse link
G GUCA1B guanylate cyclase activator 1B located_in ISO
IEA		 RGD
Ensembl
UniProt		 PMID:9620085 GO_REF:0000044 GO_REF:0000107 RGD:1599354 NCBI chr 6:42,183,284...42,194,956
Ensembl chr 6:42,183,284...42,194,956 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in IDA (PMID:7912093) UniProt PMID:7912093 NCBI chr17:8,002,615...8,020,342
Ensembl chr17:8,002,615...8,020,342 		JBrowse link
G HNF1A HNF1 homeobox A located_in ISO (PMID:10090727) MGI PMID:10090727 NCBI chr12:120,978,543...121,002,512
Ensembl chr12:120,978,543...121,002,512 		JBrowse link
G IFT20 intraflagellar transport 20 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:28,328,326...28,335,472
Ensembl chr17:28,328,325...28,335,489 		JBrowse link
G IMPG1 interphotoreceptor matrix proteoglycan 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 6:75,921,114...76,072,662
Ensembl chr 6:75,921,114...76,072,678 		JBrowse link
G IMPG2 interphotoreceptor matrix proteoglycan 2 located_in IEA UniProt GO_REF:0000044 NCBI chr 3:101,222,546...101,320,575
Ensembl chr 3:101,222,546...101,320,575 		JBrowse link
G INHA inhibin subunit alpha located_in ISO
IEA		 RGD
Ensembl		 PMID:7596220 GO_REF:0000107 RGD:2290440 NCBI chr 2:219,572,310...219,575,711
Ensembl chr 2:219,569,162...219,575,711 		JBrowse link
G IQCB1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:121,769,761...121,835,060
Ensembl chr 3:121,769,761...121,835,079 		JBrowse link
G KIF17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:20,661,630...20,718,007
Ensembl chr 1:20,664,014...20,718,017 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:169,921,329...170,085,184
Ensembl chr 1:169,921,326...170,085,208 		JBrowse link
G LYAR Ly1 antibody reactive located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 4:4,267,701...4,290,154
Ensembl chr 4:4,267,701...4,290,154 		JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISS
IEA		 UniProt GO_REF:0000024 GO_REF:0000044 NCBI chr 7:78,017,055...79,453,667
Ensembl chr 7:78,017,055...79,453,667 		JBrowse link
G MAK male germ cell associated kinase located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 6:10,762,723...10,838,539
Ensembl chr 6:10,762,723...10,838,553 		JBrowse link
G MAP1A microtubule associated protein 1A located_in ISO (PMID:24664738) MGI PMID:24664738 NCBI chr15:43,510,954...43,531,611
Ensembl chr15:43,510,958...43,531,620 		JBrowse link
G MAP1B microtubule associated protein 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:72,107,475...72,209,565
Ensembl chr 5:72,107,234...72,209,565 		JBrowse link
G MERTK MER proto-oncogene, tyrosine kinase located_in ISO
IEA		 RGD
Ensembl		 PMID:11861639 GO_REF:0000107 RGD:1299193 NCBI chr 2:111,898,607...112,029,561
Ensembl chr 2:111,898,607...112,029,561 		JBrowse link
G MYO3B myosin IIIB located_in ISO (PMID:19332056) MGI PMID:19332056 NCBI chr 2:170,178,147...170,655,167
Ensembl chr 2:170,178,145...170,655,171 		JBrowse link
G MYO5A myosin VA located_in ISO (PMID:14978221) MGI PMID:14978221 NCBI chr15:52,307,283...52,529,050
Ensembl chr15:52,307,281...52,529,132 		JBrowse link
G MYO7A myosin VIIA located_in
NOT|located_in		 IDA
ISO		 (PMID:8842737) UniProt
UniProt		 PMID:8842737 NCBI chr11:77,128,246...77,215,241
Ensembl chr11:77,128,246...77,215,241 		JBrowse link
G MYRIP myosin VIIA and Rab interacting protein located_in ISO (PMID:11964381) UniProt PMID:11964381 NCBI chr 3:39,808,914...40,260,321
Ensembl chr 3:39,808,914...40,260,321 		JBrowse link
G NUP42 nucleoporin 42 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chr 7:23,182,048...23,201,006
Ensembl chr 7:23,181,841...23,201,011 		JBrowse link
G NXNL1 nucleoredoxin like 1 located_in IEA UniProt GO_REF:0000044 NCBI chr19:17,455,425...17,460,926
Ensembl chr19:17,455,425...17,460,926 		JBrowse link
G OCRL OCRL inositol polyphosphate-5-phosphatase located_in IEA
IDA		 (PMID:22543976) UniProt PMID:22543976 GO_REF:0000044 NCBI chr  X:129,540,259...129,592,556
Ensembl chr  X:129,539,849...129,592,561 		JBrowse link
G OPN1LW opsin 1, long wave sensitive is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:154,144,243...154,159,032
Ensembl chr  X:154,144,243...154,159,032 		JBrowse link
G OPN1MW opsin 1, medium wave sensitive is_active_in
located_in		 ISO
IBA		 (PMID:10725384), (PMID:12651948), (PMID:19332056), (PMID:23351594), (PMID:23386608) RGD
GO_Central
MGI		 PMID:10725384 PMID:12651948 PMID:19332056 PMID:20209167 PMID:23351594 More... GO_REF:0000033 RGD:6893562 NCBI chr  X:154,182,596...154,196,861
Ensembl chr  X:154,182,596...154,196,861 		JBrowse link
G OPN1MW2 opsin 1, medium wave sensitive 2 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:154,219,756...154,233,286
Ensembl chr  X:154,219,756...154,233,286 		JBrowse link
G OPN1MW3 opsin 1, medium wave sensitive 3 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:154,257,582...154,271,090
Ensembl chr  X:154,257,582...154,271,090 		JBrowse link
G OPN1SW opsin 1, short wave sensitive is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl
UniProt		 PMID:20209167 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 RGD:6893562 NCBI chr 7:128,772,485...128,775,794
Ensembl chr 7:128,772,485...128,775,794 		JBrowse link
G OPN3 opsin 3 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 1:241,593,124...241,640,369
Ensembl chr 1:241,590,102...241,677,376
Ensembl chr 1:241,590,102...241,677,376 		JBrowse link
G OPN5 opsin 5 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 6:47,782,032...47,826,381
Ensembl chr 6:47,781,982...47,832,780 		JBrowse link
G PCARE photoreceptor cilium actin regulator located_in
is_active_in		 IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000044 NCBI chr 2:29,061,695...29,074,523
Ensembl chr 2:29,060,976...29,074,523 		JBrowse link
G PCDH15 protocadherin related 15 located_in IDA (PMID:14570705) HGNC-UCL PMID:14570705 NCBI chr10:53,802,771...55,627,942
Ensembl chr10:53,802,771...55,627,942 		JBrowse link
G PDC phosducin located_in
is_active_in		 IEA
IBA		 UniProt
GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr 1:186,443,566...186,461,114
Ensembl chr 1:186,443,566...186,461,114 		JBrowse link
G PDE6A phosphodiesterase 6A located_in IEA UniProt GO_REF:0000044 NCBI chr 5:149,857,953...149,944,793
Ensembl chr 5:149,857,953...149,944,793 		JBrowse link
G PDE6B phosphodiesterase 6B located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chr 4:625,573...670,782
Ensembl chr 4:625,573...670,782 		JBrowse link
G PEX6 peroxisomal biogenesis factor 6 located_in IEA UniProt GO_REF:0000044 NCBI chr 6:42,963,865...42,979,181
Ensembl chr 6:42,963,865...42,979,181 		JBrowse link
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha located_in IEA UniProt GO_REF:0000044 NCBI chr10:22,534,854...22,714,578
Ensembl chr10:22,534,854...22,714,578 		JBrowse link
G PPEF2 protein phosphatase with EF-hand domain 2 located_in IEA UniProt GO_REF:0000044 NCBI chr 4:75,859,867...75,902,452
Ensembl chr 4:75,859,864...75,902,571 		JBrowse link
G PRCD photoreceptor disc component located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr17:76,527,586...76,553,580
Ensembl chr17:76,527,586...76,553,578 		JBrowse link
G PROM1 prominin 1 located_in ISS
IEA		 UniProt GO_REF:0000024 GO_REF:0000044 NCBI chr 4:15,968,228...16,084,023
Ensembl chr 4:15,963,076...16,084,378 		JBrowse link
G PRPH peripherin located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chr12:49,295,147...49,298,686
Ensembl chr12:49,295,147...49,298,686 		JBrowse link
G PRPH2 peripherin 2 located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr 6:42,696,598...42,722,597
Ensembl chr 6:42,696,598...42,722,597 		JBrowse link
G PTGS1 prostaglandin-endoperoxide synthase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:122,370,533...122,395,703
Ensembl chr 9:122,370,530...122,395,703 		JBrowse link
G PTPRK protein tyrosine phosphatase receptor type K located_in ISO (PMID:18308476) MGI PMID:18308476 NCBI chr 6:127,968,785...128,520,599
Ensembl chr 6:127,968,785...128,520,616 		JBrowse link
G RAB27A RAB27A, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chr15:55,202,966...55,289,813
Ensembl chr15:55,202,966...55,319,113 		JBrowse link
G RAPGEF4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:19883736 RGD:2314691 NCBI chr 2:172,735,318...173,052,893
Ensembl chr 2:172,735,274...173,052,893 		JBrowse link
G RCVRN recoverin located_in IEA UniProt GO_REF:0000044 NCBI chr17:9,896,320...9,905,271
Ensembl chr17:9,896,320...9,905,271 		JBrowse link
G RD3 RD3 regulator of GUCY2D located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 1:211,476,522...211,492,162
Ensembl chr 1:211,476,522...211,492,162 		JBrowse link
G RHO rhodopsin is_active_in
located_in		 ISO
IBA
IDA
IEA		 (PMID:11767049), (PMID:23704327) RGD
GO_Central
MGI
Ensembl
UniProt		 PMID:8814134 PMID:11767049 PMID:23704327 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 RGD:6893595 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:62,613,257...62,615,116
Ensembl chr11:62,611,722...62,615,116 		JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IEA
ISS		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr 8:54,559,185...54,871,234
Ensembl chr 8:54,509,422...54,871,720 		JBrowse link
G RP1L1 RP1 like 1 located_in ISS
IEA		 UniProt GO_REF:0000024 GO_REF:0000044 NCBI chr 8:10,606,349...10,655,143
Ensembl chr 8:10,606,349...10,712,187 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in
is_active_in		 IDA
IBA		 (PMID:12140192) UniProt
GO_Central		 PMID:12140192 GO_REF:0000033 NCBI chr  X:38,269,163...38,327,509
Ensembl chr  X:38,269,163...38,327,544 		JBrowse link
G SAG S-antigen visual arrestin is_active_in
located_in		 ISO
IBA
IDA
IEA		 (PMID:3720866) RGD
GO_Central
UniProt
Ensembl		 PMID:3720866 PMID:10396627 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 RGD:6893629 NCBI chr 2:233,307,816...233,347,055
Ensembl chr 2:233,307,816...233,347,055 		JBrowse link
G SHANK2 SH3 and multiple ankyrin repeat domains 2 located_in ISS BHF-UCL GO_REF:0000024 NCBI chr11:70,467,854...71,253,228
Ensembl chr11:70,467,854...71,252,577 		JBrowse link
G SPATA7 spermatogenesis associated 7 located_in IEA UniProt GO_REF:0000044 NCBI chr14:88,385,657...88,470,350
Ensembl chr14:88,384,924...88,470,350 		JBrowse link
G STX3 syntaxin 3 located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:59,754,188...59,805,878
Ensembl chr11:59,713,456...59,805,882 		JBrowse link
G TULP1 TUB like protein 1 located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:35,497,874...35,512,896
Ensembl chr 6:35,497,874...35,512,896 		JBrowse link
G USH1C USH1 protein network component harmonin located_in ISO
IEA
ISS		 RGD
Ensembl
BHF-UCL		 PMID:14578428 GO_REF:0000024 GO_REF:0000107 RGD:1303964 NCBI chr11:17,493,900...17,544,416
Ensembl chr11:17,493,895...17,544,416 		JBrowse link
G VCAN versican located_in IEA UniProt GO_REF:0000044 NCBI chr 5:83,471,744...83,582,302
Ensembl chr 5:83,471,618...83,582,303 		JBrowse link
G WDR19 WD repeat domain 19 located_in IEA UniProt GO_REF:0000044 NCBI chr 4:39,182,529...39,285,810
Ensembl chr 4:39,182,504...39,285,810 		JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDHR1 cadherin related family member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:84,194,537...84,219,621
Ensembl chr10:84,194,537...84,219,621 		JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:47,935,977...48,016,681
Ensembl chr 4:47,935,977...48,016,681 		JBrowse link
G DHRS3 dehydrogenase/reductase 3 located_in TAS Reactome Reactome:R-HSA-2465940 NCBI chr 1:12,567,910...12,618,210
Ensembl chr 1:12,567,909...12,620,133 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 located_in ISS UniProt GO_REF:0000024 NCBI chr 3:50,191,610...50,197,696
Ensembl chr 3:50,191,610...50,197,696 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 located_in ISS UniProt GO_REF:0000024 NCBI chr 1:109,603,091...109,619,616
Ensembl chr 1:109,603,091...109,619,929 		JBrowse link
G GNB1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chr 1:1,785,286...1,891,087
Ensembl chr 1:1,785,285...1,892,292 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chr17:8,002,615...8,020,342
Ensembl chr17:8,002,615...8,020,342 		JBrowse link
G NAPEPLD N-acyl phosphatidylethanolamine phospholipase D located_in TAS Reactome Reactome:R-HSA-2466831 NCBI chr 7:103,099,776...103,150,001
Ensembl chr 7:103,099,776...103,149,560 		JBrowse link
G PDE6A phosphodiesterase 6A is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 5:149,857,953...149,944,793
Ensembl chr 5:149,857,953...149,944,793 		JBrowse link
G PDE6B phosphodiesterase 6B is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 4:625,573...670,782
Ensembl chr 4:625,573...670,782 		JBrowse link
G PDE6G phosphodiesterase 6G is_active_in IBA GO_Central GO_REF:0000033 NCBI chr17:81,650,459...81,663,127
Ensembl chr17:81,650,459...81,663,112 		JBrowse link
G PDE6H phosphodiesterase 6H is_active_in IBA GO_Central GO_REF:0000033 NCBI chr12:14,973,042...14,981,865
Ensembl chr12:14,973,042...14,981,865 		JBrowse link
G PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 located_in ISO
IEA		 RGD
Ensembl		 PMID:20089132 GO_REF:0000107 RGD:5131540 NCBI chr16:71,644,924...71,724,701
Ensembl chr16:71,637,835...71,724,701 		JBrowse link
G PRCD photoreceptor disc component located_in
is_active_in		 IEA
IBA
IDA		 (PMID:27613864) InterPro
GO_Central
Ensembl
UniProt		 PMID:27613864 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr17:76,527,586...76,553,580
Ensembl chr17:76,527,586...76,553,578 		JBrowse link
G PROM1 prominin 1 located_in IDA (PMID:18654668) BHF-UCL PMID:18654668 NCBI chr 4:15,968,228...16,084,023
Ensembl chr 4:15,963,076...16,084,378 		JBrowse link
G PRPH peripherin located_in ISO (PMID:10414956) MGI PMID:10414956 NCBI chr12:49,295,147...49,298,686
Ensembl chr12:49,295,147...49,298,686 		JBrowse link
G RDH11 retinol dehydrogenase 11 NOT|located_in ISO (PMID:15790565) MGI PMID:15790565 NCBI chr14:67,676,800...67,695,764
Ensembl chr14:67,676,800...67,695,793 		JBrowse link
G RHO rhodopsin located_in ISO
IDA		 (PMID:19934218) RGD
UniProt		 PMID:2209754 PMID:19934218 RGD:6893561 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
G ROM1 retinal outer segment membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:62,613,257...62,615,116
Ensembl chr11:62,611,722...62,615,116 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEP290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr12:88,049,016...88,142,088
Ensembl chr12:88,049,016...88,142,099 		JBrowse link
rod photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 located_in ISS UniProt GO_REF:0000024 NCBI chr 1:93,992,834...94,121,148
Ensembl chr 1:93,992,834...94,121,148 		JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A4 ATPase Na+/K+ transporting subunit alpha 4 located_in IDA (PMID:26373354) ARUK-UCL PMID:26373354 NCBI chr 1:160,151,603...160,186,980
Ensembl chr 1:160,151,586...160,186,980 		JBrowse link
G CEP290 centrosomal protein 290 is_active_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr12:88,049,016...88,142,088
Ensembl chr12:88,049,016...88,142,099 		JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:47,935,977...48,016,681
Ensembl chr 4:47,935,977...48,016,681 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr16:57,882,340...57,971,128
Ensembl chr16:57,882,340...57,971,128 		JBrowse link
G GUCY2F guanylate cyclase 2F, retinal located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:109,372,906...109,482,086
Ensembl chr  X:109,372,906...109,482,086 		JBrowse link
G RD3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:211,476,522...211,492,162
Ensembl chr 1:211,476,522...211,492,162 		JBrowse link
G RGS9BP regulator of G protein signaling 9 binding protein located_in IEA Ensembl GO_REF:0000107 NCBI chr19:32,675,848...32,678,300
Ensembl chr19:32,675,848...32,678,300 		JBrowse link
G RHO rhodopsin located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:129,528,639...129,535,344
Ensembl chr 3:129,528,639...129,535,344 		JBrowse link
G SPATA7 spermatogenesis associated 7 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr14:88,385,657...88,470,350
Ensembl chr14:88,384,924...88,470,350 		JBrowse link
G TMEM237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:201,620,186...201,643,503
Ensembl chr 2:201,620,184...201,643,570 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21533
    cellular anatomical structure 21181
      cell projection 2958
        plasma membrane bounded cell projection 2839
          cilium 1057
            non-motile cilium 196
              9+0 non-motile cilium 153
                photoreceptor cell cilium + 139
paths to the root