Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:9+0 non-motile cilium
go back to main search page
Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium


show annotations for term's descendants           Sort by:
9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFAP96 cilia and flagella associated protein 96 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:45,175,351...45,208,647
Ensembl chr16:45,192,032...45,207,964 		JBrowse link
G DYNLL2 dynein light chain LC8-type 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:32,748,229...32,768,896
Ensembl chr 9:32,762,278...32,767,103 		JBrowse link
G ENKD1 enkurin domain containing 1 located_in ISO (PMID:29257953) MGI PMID:29257953 NCBI chr 5:81,783,887...81,787,244
Ensembl chr 5:81,784,109...81,787,243 		JBrowse link
G IFT80 intraflagellar transport 80 located_in
is_active_in		 IEA
ISO		 (PMID:26996322) Ensembl
MGI		 PMID:26996322 GO_REF:0000107 NCBI chr34:26,332,456...26,455,428 JBrowse link
G IFTAP intraflagellar transport associated protein located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr18:31,553,965...31,618,147
Ensembl chr18:31,556,023...31,618,123 		JBrowse link
G LOC119878397 phytanoyl-CoA dioxygenase, peroxisomal-like located_in IEA Ensembl GO_REF:0000107
G LOC478000 phytanoyl-CoA hydroxylase-like located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chr 2:23,185,901...23,206,719
Ensembl chr 2:23,185,782...23,253,497 		JBrowse link
G PKHD1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin located_in IEA Ensembl GO_REF:0000107 NCBI chr12:19,280,866...19,744,669
Ensembl chr12:19,286,822...19,744,141 		JBrowse link
G SMO smoothened, frizzled class receptor located_in IEA Ensembl GO_REF:0000107 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033 		JBrowse link
G TTLL4 tubulin tyrosine ligase like 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr37:25,303,818...25,341,315
Ensembl chr37:25,273,110...25,340,512 		JBrowse link
G TTLL5 tubulin tyrosine ligase like 5 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chr 8:48,651,766...48,920,733
Ensembl chr 8:48,651,814...48,920,039 		JBrowse link
G TTLL6 tubulin tyrosine ligase like 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:24,993,135...25,039,616
Ensembl chr 9:24,999,126...25,033,525 		JBrowse link
G TTLL7 tubulin tyrosine ligase like 7 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chr 6:63,773,635...63,927,084
Ensembl chr 6:63,784,088...63,922,661 		JBrowse link
G TULP3 TUB like protein 3 located_in ISO (PMID:20889716) MGI PMID:20889716 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097 		JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chr10:44,232,716...44,278,555
Ensembl chr10:44,234,004...44,260,746 		JBrowse link
G GUCA1A guanylate cyclase activator 1A located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:10,786,284...10,795,974
Ensembl chr12:10,788,424...10,795,442 		JBrowse link
G GUCA1B guanylate cyclase activator 1B located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr12:10,796,961...10,806,796
Ensembl chr12:10,797,921...10,834,237 		JBrowse link
G IFT140 intraflagellar transport 140 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758 		JBrowse link
G OPN1SW opsin 1, short wave sensitive located_in IEA Ensembl GO_REF:0000107 NCBI chr14:7,865,370...7,869,516
Ensembl chr14:7,865,561...7,868,745 		JBrowse link
G PCARE photoreceptor cilium actin regulator located_in IEA Ensembl GO_REF:0000107 NCBI chr17:22,898,998...22,910,639
Ensembl chr17:22,898,998...22,910,639 		JBrowse link
G PRKCA protein kinase C alpha located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chr 9:13,638,106...13,879,571
Ensembl chr 9:13,644,010...13,967,630 		JBrowse link
G RD3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:9,876,003...9,887,267 JBrowse link
G SLC24A4 solute carrier family 24 member 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:1,570,833...1,685,135
Ensembl chr 8:1,517,560...1,680,208 		JBrowse link
G TMEM237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chr37:10,691,010...10,709,632
Ensembl chr37:10,691,743...10,709,606 		JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CFAP410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chr31:38,183,181...38,192,739
Ensembl chr31:38,183,188...38,196,113 		JBrowse link
G FAM161A FAM161 centrosomal protein A located_in ISO (PMID:22791751) UniProt PMID:22791751 NCBI chr10:61,774,879...61,839,853
Ensembl chr10:61,814,693...61,839,777 		JBrowse link
G IFT52 intraflagellar transport 52 located_in IEA Ensembl GO_REF:0000107 NCBI chr24:31,295,987...31,334,825
Ensembl chr24:31,296,015...31,334,808 		JBrowse link
G PEX6 peroxisomal biogenesis factor 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:11,503,184...11,514,977
Ensembl chr12:11,503,240...11,514,929 		JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IEA Ensembl GO_REF:0000107 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009 		JBrowse link
G SDCCAG8 SHH signaling and ciliogenesis regulator SDCCAG8 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:34,395,977...34,631,479
Ensembl chr 7:34,396,345...34,631,462 		JBrowse link
G USH1G USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,527,935...5,532,940
Ensembl chr 9:5,528,492...5,533,900 		JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRV1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:17906286) MGI PMID:17906286 NCBI chr 3:17,866,459...18,351,532
Ensembl chr 3:17,866,808...18,351,532 		JBrowse link
G ALPK1 alpha kinase 1 located_in ISO (PMID:30967659) UniProt PMID:30967659 NCBI chr32:32,135,110...32,270,732
Ensembl chr32:32,136,738...32,267,264 		JBrowse link
G ARL3 ADP ribosylation factor like GTPase 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr28:15,152,762...15,189,043
Ensembl chr28:15,142,485...15,188,903 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr30:36,058,932...36,109,206
Ensembl chr30:35,927,233...36,108,381 		JBrowse link
G CEP290 centrosomal protein 290 located_in ISO (PMID:16632484), (PMID:16682973), (PMID:23943788) MGI PMID:16632484 PMID:16682973 PMID:23943788 NCBI chr15:29,194,449...29,281,351
Ensembl chr15:29,194,983...29,280,429 		JBrowse link
G CETN1 centrin 1 located_in ISO (PMID:15347651), (PMID:30120214) UniProt PMID:15347651 PMID:30120214 NCBI chr 7:67,431,020...67,431,774
Ensembl chr 7:67,431,081...67,431,599 		JBrowse link
G CETN2 centrin 2 located_in ISO (PMID:15347651) MGI PMID:15347651 NCBI chr  X:120,714,676...120,720,012 JBrowse link
G CETN3 centrin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,529,198...18,547,195
Ensembl chr 3:18,529,240...18,547,069 		JBrowse link
G CFAP410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chr31:38,183,181...38,192,739
Ensembl chr31:38,183,188...38,196,113 		JBrowse link
G FAM161A FAM161 centrosomal protein A located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr10:61,774,879...61,839,853
Ensembl chr10:61,814,693...61,839,777 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,128,244...39,133,280
Ensembl chr20:39,128,244...39,133,280 		JBrowse link
G IFT122 intraflagellar transport 122 located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906 		JBrowse link
G IFT140 intraflagellar transport 140 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758 		JBrowse link
G IFT20 intraflagellar transport 20 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,581,117...42,587,830
Ensembl chr 9:42,581,433...42,587,804 		JBrowse link
G IFT52 intraflagellar transport 52 located_in IEA Ensembl GO_REF:0000107 NCBI chr24:31,295,987...31,334,825
Ensembl chr24:31,296,015...31,334,808 		JBrowse link
G IFT57 intraflagellar transport 57 located_in IEA Ensembl GO_REF:0000107 NCBI chr33:13,432,902...13,486,692
Ensembl chr33:13,410,544...13,486,612 		JBrowse link
G IFT88 intraflagellar transport 88 located_in ISO (PMID:19208653), (PMID:20368623) MGI PMID:19208653 PMID:20368623 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266 		JBrowse link
G IQCB1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chr33:25,046,975...25,113,252
Ensembl chr33:25,047,172...25,112,652 		JBrowse link
G KIAA1549 KIAA1549 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:9,681,889...9,839,844
Ensembl chr16:9,696,913...9,834,548 		JBrowse link
G KIF17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,224,838...78,266,612
Ensembl chr 2:78,224,461...78,266,610 		JBrowse link
G KIF3A kinesin family member 3A located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chr11:20,988,516...21,044,151
Ensembl chr11:20,928,655...21,044,090 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:28,581,855...28,739,327
Ensembl chr 7:28,593,425...28,739,272 		JBrowse link
G LCA5 lebercilin LCA5 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:40,443,759...40,527,300
Ensembl chr12:40,444,617...40,527,292 		JBrowse link
G LOC487178 protocadherin beta-15 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:36,251,313...36,271,637 JBrowse link
G MAK male germ cell associated kinase located_in IEA Ensembl GO_REF:0000107 NCBI chr35:10,474,081...10,530,951
Ensembl chr35:10,475,179...10,525,089 		JBrowse link
G MYO7A myosin VIIA located_in IEA Ensembl GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279 		JBrowse link
G NPHP1 nephrocystin 1 located_in ISO (PMID:16885411) UniProt PMID:16885411 NCBI chr17:35,076,527...35,136,674
Ensembl chr17:35,076,636...35,136,425 		JBrowse link
G NPHP4 nephrocystin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:59,819,236...59,936,220
Ensembl chr 5:59,814,274...59,929,386 		JBrowse link
G POC5 POC5 centriolar protein is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 3:30,708,451...30,745,754
Ensembl chr 3:30,709,101...30,745,550 		JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IEA Ensembl GO_REF:0000107 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009 		JBrowse link
G RP1L1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chr25:27,317,102...27,332,075
Ensembl chr25:27,325,658...27,330,556 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in ISO (PMID:10725384) MGI PMID:10725384 NCBI chr  X:33,056,371...33,105,036
Ensembl chr  X:32,745,020...33,330,841 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr15:18,316,887...18,388,724
Ensembl chr15:18,316,887...18,387,735 		JBrowse link
G RPGRIP1L RPGRIP1 like is_active_in ISO
IBA		 RGD
GO_Central		 PMID:17558407 GO_REF:0000033 RGD:11537356 NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284 		JBrowse link
G SEPTIN2 septin 2 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr25:51,296,486...51,330,508
Ensembl chr25:51,296,554...51,328,616 		JBrowse link
G SPATA7 spermatogenesis associated 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:59,658,295...59,697,409
Ensembl chr 8:59,658,365...59,697,318 		JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr30:8,877,155...8,922,749
Ensembl chr30:8,879,625...8,923,165 		JBrowse link
G TBCC tubulin folding cofactor C located_in IEA Ensembl GO_REF:0000107 NCBI chr12:11,332,736...11,334,799
Ensembl chr12:11,333,676...11,334,842 		JBrowse link
G TMEM237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chr37:10,691,010...10,709,632
Ensembl chr37:10,691,743...10,709,606 		JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:49,809,156...49,821,224
Ensembl chr11:49,809,465...49,821,075 		JBrowse link
G TSGA10IP testis specific 10 interacting protein is_active_in IBA GO_Central GO_REF:0000033 NCBI chr18:51,315,150...51,323,769
Ensembl chr18:51,314,177...51,323,718 		JBrowse link
G TTC8 tetratricopeptide repeat domain 8 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:60,061,670...60,115,464
Ensembl chr 8:60,061,732...60,115,075 		JBrowse link
G USH1G USH1 protein network component sans located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,527,935...5,532,940
Ensembl chr 9:5,528,492...5,533,900 		JBrowse link
G USH2A usherin located_in IEA Ensembl GO_REF:0000107 NCBI chr38:11,063,221...11,750,444
Ensembl chr38:11,063,817...11,750,444 		JBrowse link
G WDR19 WD repeat domain 19 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:73,115,560...73,213,823
Ensembl chr 3:73,137,250...73,221,512 		JBrowse link
G WHRN whirlin located_in IEA Ensembl GO_REF:0000107 NCBI chr11:68,617,383...68,699,824
Ensembl chr11:68,617,377...68,699,977 		JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RHO rhodopsin located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr20:5,630,735...5,638,906 JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr30:8,877,155...8,922,749
Ensembl chr30:8,879,625...8,923,165 		JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351 		JBrowse link
G CEP290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr15:29,194,449...29,281,351
Ensembl chr15:29,194,983...29,280,429 		JBrowse link
G NPHP1 nephrocystin 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr17:35,076,527...35,136,674
Ensembl chr17:35,076,636...35,136,425 		JBrowse link
G NPHP4 nephrocystin 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:59,819,236...59,936,220
Ensembl chr 5:59,814,274...59,929,386 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr  X:33,056,371...33,105,036
Ensembl chr  X:32,745,020...33,330,841 		JBrowse link
G RPGRIP1 RPGR interacting protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:18,316,887...18,388,724
Ensembl chr15:18,316,887...18,387,735 		JBrowse link
G SPATA7 spermatogenesis associated 7 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:59,658,295...59,697,409
Ensembl chr 8:59,658,365...59,697,318 		JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:55,058,361...55,186,255
Ensembl chr 6:55,058,361...55,186,253 		JBrowse link
G AHI1 Abelson helper integration site 1 located_in ISO (PMID:20592197) MGI PMID:20592197 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351 		JBrowse link
G ARR3 arrestin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:54,725,034...54,730,920
Ensembl chr  X:54,718,323...54,730,852 		JBrowse link
G BBS4 Bardet-Biedl syndrome 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr30:36,058,932...36,109,206
Ensembl chr30:35,927,233...36,108,381 		JBrowse link
G BBS7 Bardet-Biedl syndrome 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,280,487...18,319,128
Ensembl chr19:18,280,520...18,315,825 		JBrowse link
G BSG basigin located_in ISO (PMID:25957687) UniProt PMID:25957687 NCBI chr20:57,942,703...57,951,089
Ensembl chr20:57,943,276...57,951,061 		JBrowse link
G CACNA1F calcium voltage-gated channel subunit alpha1 F ISO RGD PMID:11526344 RGD:632484 NCBI chr  X:42,302,971...42,327,787
Ensembl chr  X:42,303,158...42,326,774 		JBrowse link
G CCDC66 coiled-coil domain containing 66 located_in IEA UniProt GO_REF:0000044 NCBI chr20:33,714,224...33,758,846
Ensembl chr20:33,714,224...33,758,799 		JBrowse link
G CEP250 centrosomal protein 250 located_in ISO (PMID:28005958) UniProt PMID:28005958 NCBI chr24:24,411,882...24,461,916
Ensembl chr24:24,418,859...24,461,640 		JBrowse link
G CEP290 centrosomal protein 290 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chr15:29,194,449...29,281,351
Ensembl chr15:29,194,983...29,280,429 		JBrowse link
G CERKL ceramide kinase like located_in IEA Ensembl GO_REF:0000107 NCBI chr36:24,708,109...24,839,240
Ensembl chr36:24,710,035...24,859,028 		JBrowse link
G CFAP410 cilia and flagella associated protein 410 located_in IEA Ensembl GO_REF:0000107 NCBI chr31:38,183,181...38,192,739
Ensembl chr31:38,183,188...38,196,113 		JBrowse link
G CIB2 calcium and integrin binding family member 2 located_in IEA UniProt GO_REF:0000044
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:10725384), (PMID:15634774), (PMID:20592197) MGI PMID:10725384 PMID:15634774 PMID:20592197 NCBI chr13:43,831,159...43,864,276
Ensembl chr13:43,831,163...43,864,276 		JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:15634774) MGI PMID:15634774 NCBI chr10:44,232,716...44,278,555
Ensembl chr10:44,234,004...44,260,746 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:58,574,552...58,641,631
Ensembl chr 2:58,574,552...58,640,812 		JBrowse link
G CNGB3 cyclic nucleotide gated channel subunit beta 3 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr29:32,744,946...32,992,715
Ensembl chr29:32,749,389...32,893,077 		JBrowse link
G CRB1 crumbs cell polarity complex component 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:5,277,394...5,490,542
Ensembl chr 7:5,277,394...5,490,470 		JBrowse link
G GNAQ G protein subunit alpha q located_in ISS AgBase GO_REF:0000024 NCBI chr 1:80,733,530...80,928,065
Ensembl chr 1:80,715,366...80,928,065 		JBrowse link
G GNAT1 G protein subunit alpha transducin 1 located_in ISO
IEA
ISS		 RGD
Ensembl
UniProt		 PMID:10396627 PMID:11931744 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 RGD:1599009 RGD:6893629 NCBI chr20:39,128,244...39,133,280
Ensembl chr20:39,128,244...39,133,280 		JBrowse link
G GNAT2 G protein subunit alpha transducin 2 is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:17591908 GO_REF:0000033 GO_REF:0000107 RGD:2302146 NCBI chr 6:42,259,404...42,271,197
Ensembl chr 6:42,259,702...42,268,082 		JBrowse link
G GNB1 G protein subunit beta 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:56,777,854...56,879,619
Ensembl chr 5:56,779,354...56,817,295 		JBrowse link
G GNGT1 G protein subunit gamma transducin 1 ISO RGD PMID:10396627 PMID:11931744 RGD:1599009 RGD:6893629 NCBI chr14:19,081,676...19,420,261
Ensembl chr14:19,415,510...19,420,255 		JBrowse link
G GRK1 G protein-coupled receptor kinase 1 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chr22:60,911,953...60,929,330
Ensembl chr22:60,911,953...60,926,146 		JBrowse link
G GUCA1A guanylate cyclase activator 1A located_in IEA Ensembl GO_REF:0000107 NCBI chr12:10,786,284...10,795,974
Ensembl chr12:10,788,424...10,795,442 		JBrowse link
G GUCA1B guanylate cyclase activator 1B located_in ISO (PMID:22183407) RGD
MGI		 PMID:9620085 PMID:22183407 RGD:1599354 NCBI chr12:10,796,961...10,806,796
Ensembl chr12:10,797,921...10,834,237 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:32,844,033...32,859,263
Ensembl chr 5:32,844,033...32,857,687 		JBrowse link
G HNF1A HNF1 homeobox A located_in IEA Ensembl GO_REF:0000107 NCBI chr26:16,805,690...16,826,065
Ensembl chr26:16,805,690...16,824,790 		JBrowse link
G IFT20 intraflagellar transport 20 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:42,581,117...42,587,830
Ensembl chr 9:42,581,433...42,587,804 		JBrowse link
G IMPG1 interphotoreceptor matrix proteoglycan 1 located_in IEA UniProt GO_REF:0000044 NCBI chr12:37,506,511...37,614,683
Ensembl chr12:37,507,525...37,638,250 		JBrowse link
G IMPG2 interphotoreceptor matrix proteoglycan 2 located_in IEA UniProt GO_REF:0000044 NCBI chr33:7,706,069...7,785,817
Ensembl chr33:7,709,683...7,785,309 		JBrowse link
G INHA inhibin subunit alpha ISO RGD PMID:7596220 RGD:2290440 NCBI chr37:26,080,465...26,083,570
Ensembl chr37:26,080,510...26,083,391 		JBrowse link
G IQCB1 IQ motif containing B1 located_in IEA Ensembl GO_REF:0000107 NCBI chr33:25,046,975...25,113,252
Ensembl chr33:25,047,172...25,112,652 		JBrowse link
G KIF17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,224,838...78,266,612
Ensembl chr 2:78,224,461...78,266,610 		JBrowse link
G KIFAP3 kinesin associated protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:28,581,855...28,739,327
Ensembl chr 7:28,593,425...28,739,272 		JBrowse link
G LYAR Ly1 antibody reactive located_in ISO (PMID:25735755) UniProt PMID:25735755 NCBI chr 3:69,710,735...69,724,175
Ensembl chr 3:69,710,735...69,724,177 		JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISO (PMID:24608321) UniProt PMID:24608321 NCBI chr18:17,973,058...19,098,785
Ensembl chr18:17,918,928...18,930,059 		JBrowse link
G MAK male germ cell associated kinase located_in IEA Ensembl GO_REF:0000107 NCBI chr35:10,474,081...10,530,951
Ensembl chr35:10,475,179...10,525,089 		JBrowse link
G MAP1A microtubule associated protein 1A located_in ISO (PMID:24664738) MGI PMID:24664738 NCBI chr30:10,361,871...10,382,780
Ensembl chr30:10,361,909...10,381,376 		JBrowse link
G MAP1B microtubule associated protein 1B located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:55,175,000...55,258,160
Ensembl chr 2:55,174,837...55,253,975 		JBrowse link
G MERTK MER proto-oncogene, tyrosine kinase ISO RGD PMID:11861639 RGD:1299193 NCBI chr17:36,336,787...36,445,796
Ensembl chr17:36,336,861...36,445,380 		JBrowse link
G MYO3B myosin IIIB located_in ISO (PMID:19332056) MGI PMID:19332056 NCBI chr36:14,804,662...15,229,597
Ensembl chr36:14,803,514...15,209,820 		JBrowse link
G MYO5A myosin VA located_in ISO (PMID:14978221) MGI PMID:14978221 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061 		JBrowse link
G MYO7A myosin VIIA located_in
NOT|located_in		 IEA
ISO		 (PMID:8842737) Ensembl
UniProt		 PMID:8842737 GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279 		JBrowse link
G MYRIP myosin VIIA and Rab interacting protein located_in ISO (PMID:11964381) UniProt PMID:11964381 NCBI chr23:9,448,564...9,765,328
Ensembl chr23:9,448,559...9,763,182 		JBrowse link
G NUP42 nucleoporin 42 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chr14:36,865,737...36,887,682
Ensembl chr14:36,802,984...36,887,588 		JBrowse link
G OCRL OCRL inositol polyphosphate-5-phosphatase located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:100,760,302...100,817,673
Ensembl chr  X:100,757,373...100,831,500 		JBrowse link
G OPN1LW opsin 1, medium wave sensitive is_active_in IBA GO_Central GO_REF:0000033 NCBI chr  X:121,974,552...121,987,418
Ensembl chr  X:121,974,552...121,987,418 		JBrowse link
G OPN1SW opsin 1, short wave sensitive is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl		 PMID:20209167 GO_REF:0000033 GO_REF:0000107 RGD:6893562 NCBI chr14:7,865,370...7,869,516
Ensembl chr14:7,865,561...7,868,745 		JBrowse link
G OPN3 opsin 3 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 7:32,995,047...33,040,873
Ensembl chr 7:32,996,938...33,040,876 		JBrowse link
G OPN5 opsin 5 is_active_in IBA GO_Central GO_REF:0000033 NCBI chr12:15,831,311...15,858,121
Ensembl chr12:15,831,311...15,877,721 		JBrowse link
G PCARE photoreceptor cilium actin regulator is_active_in IBA GO_Central GO_REF:0000033 NCBI chr17:22,898,998...22,910,639
Ensembl chr17:22,898,998...22,910,639 		JBrowse link
G PCDH15 protocadherin related 15 located_in ISO (PMID:14570705) HGNC-UCL
MGI		 PMID:14570705 NCBI chr26:33,426,728...34,589,208
Ensembl chr26:33,719,839...34,588,017 		JBrowse link
G PDC phosducin located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 NCBI chr 7:19,498,785...19,514,225
Ensembl chr 7:19,498,788...19,514,228 		JBrowse link
G PDE6A phosphodiesterase 6A located_in IEA UniProt GO_REF:0000044 NCBI chr 4:59,103,965...59,163,857
Ensembl chr 4:59,103,945...59,163,857 		JBrowse link
G PDE6B phosphodiesterase 6B located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chr 3:91,746,571...91,775,372
Ensembl chr 3:91,746,571...91,775,372 		JBrowse link
G PRCD photoreceptor disc component located_in IEA UniProt
Ensembl		 GO_REF:0000044 GO_REF:0000107 NCBI chr 9:4,179,757...4,190,658
Ensembl chr 9:4,185,466...4,188,777 		JBrowse link
G PROM1 prominin 1 located_in ISO (PMID:19228982) UniProt PMID:19228982 NCBI chr 3:64,229,487...64,362,346
Ensembl chr 3:64,260,685...64,382,009 		JBrowse link
G PRPH peripherin located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chr27:5,314,815...5,320,270
Ensembl chr27:5,314,807...5,320,089 		JBrowse link
G PRPH2 peripherin 2 located_in IEA Ensembl
UniProt		 GO_REF:0000044 GO_REF:0000107 NCBI chr12:11,299,236...11,316,175
Ensembl chr12:11,299,236...11,316,175 		JBrowse link
G PTGS1 prostaglandin-endoperoxide synthase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:60,195,118...60,216,847
Ensembl chr 9:60,195,124...60,216,819 		JBrowse link
G PTPRK protein tyrosine phosphatase receptor type K located_in ISO (PMID:18308476) MGI PMID:18308476 NCBI chr 1:66,596,659...67,022,631
Ensembl chr 1:66,597,563...67,124,540 		JBrowse link
G RAB27A RAB27A, member RAS oncogene family located_in IEA Ensembl GO_REF:0000107 NCBI chr30:20,633,576...20,706,240
Ensembl chr30:20,635,400...20,690,521 		JBrowse link
G RAPGEF4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:19883736 RGD:2314691 NCBI chr36:17,087,488...17,323,504
Ensembl chr36:17,087,488...17,323,220 		JBrowse link
G RCVRN recoverin located_in IEA UniProt GO_REF:0000044 NCBI chr 5:34,323,580...34,330,667
Ensembl chr 5:34,323,576...34,330,667 		JBrowse link
G RD3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:9,876,003...9,887,267 JBrowse link
G RHO rhodopsin is_active_in
located_in		 ISO
IBA
IEA		 RGD
GO_Central
Ensembl
UniProt		 PMID:8814134 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 RGD:6893595 NCBI chr20:5,630,735...5,638,906 JBrowse link
G ROM1 retinal outer segment membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:54,025,603...54,027,803
Ensembl chr18:54,025,606...54,027,375 		JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IEA
ISS		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000044 GO_REF:0000107 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009 		JBrowse link
G RP1L1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chr25:27,317,102...27,332,075
Ensembl chr25:27,325,658...27,330,556 		JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) UniProt PMID:12140192 NCBI chr  X:33,056,371...33,105,036
Ensembl chr  X:32,745,020...33,330,841 		JBrowse link
G SAG S-antigen visual arrestin is_active_in
located_in		 ISO
IBA
IEA
ISS		 RGD
GO_Central
UniProt
Ensembl		 PMID:10396627 GO_REF:0000024 GO_REF:0000033 GO_REF:0000044 GO_REF:0000107 RGD:6893629 NCBI chr25:44,800,141...44,843,580
Ensembl chr25:44,812,362...44,843,579 		JBrowse link
G SHANK2 SH3 and multiple ankyrin repeat domains 2 located_in ISO (PMID:19299912) BHF-UCL PMID:19299912 NCBI chr18:47,477,625...47,915,557
Ensembl chr18:47,635,788...47,912,117 		JBrowse link
G STX3 syntaxin 3 located_in ISO (PMID:33974130) UniProt PMID:33974130 NCBI chr21:50,298,040...50,322,773
Ensembl chr21:50,298,158...50,318,663 		JBrowse link
G TULP1 TUB like protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,632,580...4,644,313
Ensembl chr12:4,633,098...4,645,994 		JBrowse link
G USH1C USH1 protein network component harmonin located_in ISO (PMID:14578428), (PMID:17906286) RGD
MGI		 PMID:14578428 PMID:17906286 RGD:1303964 NCBI chr21:40,055,786...40,100,685
Ensembl chr21:40,055,730...40,101,430 		JBrowse link
G VCAN versican located_in IEA UniProt GO_REF:0000044 NCBI chr 3:24,127,293...24,238,859
Ensembl chr 3:24,119,181...24,239,192 		JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDHR1 cadherin related family member 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:32,435,364...32,459,181
Ensembl chr 4:32,439,148...32,459,192 		JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chr13:43,831,159...43,864,276
Ensembl chr13:43,831,163...43,864,276 		JBrowse link
G GNB1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chr 5:56,777,854...56,879,619
Ensembl chr 5:56,779,354...56,817,295 		JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:32,844,033...32,859,263
Ensembl chr 5:32,844,033...32,857,687 		JBrowse link
G PDE6A phosphodiesterase 6A is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 4:59,103,965...59,163,857
Ensembl chr 4:59,103,945...59,163,857 		JBrowse link
G PDE6B phosphodiesterase 6B is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 3:91,746,571...91,775,372
Ensembl chr 3:91,746,571...91,775,372 		JBrowse link
G PDE6G phosphodiesterase 6G is_active_in IBA GO_Central GO_REF:0000033 NCBI chr 9:525,123...529,406
Ensembl chr 9:526,577...529,526 		JBrowse link
G PDE6H phosphodiesterase 6H is_active_in IBA GO_Central GO_REF:0000033 NCBI chr27:31,640,731...31,664,494
Ensembl chr27:31,640,737...31,664,401 		JBrowse link
G PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20089132 RGD:5131540 NCBI chr 5:77,428,587...77,506,126
Ensembl chr 5:77,432,517...77,565,801 		JBrowse link
G PRCD photoreceptor disc component located_in
is_active_in		 IEA
IBA		 InterPro
GO_Central
Ensembl		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:4,179,757...4,190,658
Ensembl chr 9:4,185,466...4,188,777 		JBrowse link
G PROM1 prominin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:64,229,487...64,362,346
Ensembl chr 3:64,260,685...64,382,009 		JBrowse link
G PRPH peripherin located_in ISO (PMID:10414956) MGI PMID:10414956 NCBI chr27:5,314,815...5,320,270
Ensembl chr27:5,314,807...5,320,089 		JBrowse link
G RDH11 retinol dehydrogenase 11 NOT|located_in ISO (PMID:15790565) MGI PMID:15790565 NCBI chr 8:41,651,970...41,669,661
Ensembl chr 8:41,614,921...41,669,576 		JBrowse link
G RHO rhodopsin located_in ISO
IEA
ISS		 RGD
Ensembl
UniProt		 PMID:2209754 GO_REF:0000024 GO_REF:0000107 RGD:6893561 NCBI chr20:5,630,735...5,638,906 JBrowse link
G ROM1 retinal outer segment membrane protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:54,025,603...54,027,803
Ensembl chr18:54,025,606...54,027,375 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEP290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr15:29,194,449...29,281,351
Ensembl chr15:29,194,983...29,280,429 		JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEP290 centrosomal protein 290 is_active_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chr15:29,194,449...29,281,351
Ensembl chr15:29,194,983...29,280,429 		JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 located_in ISS UniProt GO_REF:0000024 NCBI chr13:43,831,159...43,864,276
Ensembl chr13:43,831,163...43,864,276 		JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:58,574,552...58,641,631
Ensembl chr 2:58,574,552...58,640,812 		JBrowse link
G GUCY2F guanylate cyclase 2F, retinal located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:82,648,673...82,751,394
Ensembl chr  X:82,649,601...82,751,394 		JBrowse link
G RD3 RD3 regulator of GUCY2D located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:9,876,003...9,887,267 JBrowse link
G RGS9BP regulator of G protein signaling 9 binding protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:119,316,799...119,322,856
Ensembl chr 1:119,321,909...119,322,625 		JBrowse link
G RHO rhodopsin located_in IEA Ensembl GO_REF:0000107 NCBI chr20:5,630,735...5,638,906 JBrowse link
G SPATA7 spermatogenesis associated 7 located_in
is_active_in		 IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:59,658,295...59,697,409
Ensembl chr 8:59,658,365...59,697,318 		JBrowse link
G TMEM237 transmembrane protein 237 located_in IEA Ensembl GO_REF:0000107 NCBI chr37:10,691,010...10,709,632
Ensembl chr37:10,691,743...10,709,606 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23074
    cellular anatomical structure 22784
      cell projection 2681
        plasma membrane bounded cell projection 2607
          cilium 983
            non-motile cilium 177
              9+0 non-motile cilium 135
                photoreceptor cell cilium + 121
paths to the root