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ONTOLOGY REPORT - ANNOTATIONS

Term:9+0 non-motile cilium
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Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium

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show annotations for term's descendants           Sort by:
9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap96 cilia and flagella associated protein 96 located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004955403:23,617,764...23,634,689
Ensembl chrNW_004955403:23,619,399...23,634,731 		JBrowse link
G CUNH1orf115 chromosome unknown C1orf115 homolog located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004955520:3,064,235...3,065,978 JBrowse link
G Dynll2 dynein light chain LC8-type 2 located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004955451:4,929,186...4,936,027
Ensembl chrNW_004955451:4,929,186...4,936,027 		JBrowse link
G Enkd1 enkurin domain containing 1 located_in ISO (PMID:29257953) MGI PMID:29257953 NCBI chrNW_004955484:9,015,744...9,019,781
Ensembl chrNW_004955484:9,016,049...9,019,568 		JBrowse link
G Ift80 intraflagellar transport 80 is_active_in ISO (PMID:26996322) MGI PMID:26996322 NCBI chrNW_004955448:10,808,940...10,819,655 JBrowse link
G Iftap intraflagellar transport associated protein located_in ISO (PMID:26703212) MGI PMID:26703212 NCBI chrNW_004955422:9,804,012...9,867,580
Ensembl chrNW_004955422:9,804,075...9,851,434 		JBrowse link
G Phyh phytanoyl-CoA 2-hydroxylase located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004955462:1,238,622...1,250,731
Ensembl chrNW_004955462:1,238,622...1,250,736 		JBrowse link
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin located_in ISO (PMID:24586199) MGI PMID:24586199 NCBI chrNW_004955411:5,988,100...6,434,369
Ensembl chrNW_004955411:5,990,316...6,432,301 		JBrowse link
G Smo smoothened, frizzled class receptor located_in ISO (PMID:26996322) MGI PMID:26996322 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Ttll4 tubulin tyrosine ligase like 4 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004955453:14,679,945...14,720,025 JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004955612:109,742...351,255
Ensembl chrNW_004955612:109,743...353,918 		JBrowse link
G Ttll6 tubulin tyrosine ligase like 6 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004955451:12,474,035...12,509,104
Ensembl chrNW_004955451:12,473,935...12,509,192 		JBrowse link
G Ttll7 tubulin tyrosine ligase like 7 located_in ISO (PMID:17499049) MGI PMID:17499049 NCBI chrNW_004955423:9,819,049...9,956,744
Ensembl chrNW_004955423:9,820,380...9,980,728 		JBrowse link
G Tulp3 TUB like protein 3 located_in ISO (PMID:20889716) MGI PMID:20889716 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400 		JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chrNW_004955470:4,884,054...4,907,151
Ensembl chrNW_004955470:4,884,309...4,906,902 		JBrowse link
G Guca1a guanylate cyclase activator 1A located_in ISO (PMID:9620085) UniProt PMID:9620085 NCBI chrNW_004955437:8,370,553...8,382,640
Ensembl chrNW_004955437:8,376,091...8,382,640 		JBrowse link
G Guca1b guanylate cyclase activator 1B located_in ISO (PMID:9620085) UniProt PMID:9620085 NCBI chrNW_004955437:8,384,692...8,390,946
Ensembl chrNW_004955437:8,382,299...8,390,946 		JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (PMID:24619649) MGI PMID:24619649 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chrNW_004955479:9,573,594...9,576,668
Ensembl chrNW_004955479:9,573,594...9,576,668 		JBrowse link
G Pcare photoreceptor cilium actin regulator located_in ISO (PMID:25616964) MGI PMID:25616964 NCBI chrNW_004955469:10,919,776...10,930,392
Ensembl chrNW_004955469:10,921,124...10,928,862 		JBrowse link
G Prkca protein kinase C alpha located_in ISO (PMID:10813773) MGI PMID:10813773 NCBI chrNW_004955478:5,686,639...6,090,356
Ensembl chrNW_004955478:5,686,640...6,083,967 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (PMID:21078983) UniProt PMID:21078983 NCBI chrNW_004955489:896,964...903,855 JBrowse link
G Slc24a4 solute carrier family 24 member 4 located_in ISO (PMID:28650316) ARUK-UCL PMID:28650316 NCBI chrNW_004955438:14,609,779...14,765,516
Ensembl chrNW_004955438:14,609,424...14,759,673 		JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) MGI PMID:20375344 NCBI chrNW_004955403:148,181...173,350
Ensembl chrNW_004955403:148,183...172,386 		JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955407:41,120,820...41,128,089
Ensembl chrNW_004955407:41,121,048...41,126,996 		JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955445:13,542,726...13,580,204
Ensembl chrNW_004955445:13,543,804...13,580,204 		JBrowse link
G Pex6 peroxisomal biogenesis factor 6 located_in ISO (PMID:26593283) UniProt PMID:26593283 NCBI chrNW_004955437:8,945,842...8,964,870
Ensembl chrNW_004955437:8,947,002...8,960,371 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955406:6,694,687...6,909,555
Ensembl chrNW_004955406:6,695,051...6,909,555 		JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (PMID:31637240) UniProt PMID:31637240 NCBI chrNW_004955553:1,788,443...1,795,139
Ensembl chrNW_004955553:1,788,401...1,796,441 		JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 located_in ISO (PMID:17906286) MGI PMID:17906286 NCBI chrNW_004955418:20,603,323...21,039,891 JBrowse link
G Alpk1 alpha kinase 1 located_in ISO (PMID:30967659) UniProt PMID:30967659 NCBI chrNW_004955457:14,325,278...14,444,368
Ensembl chrNW_004955457:14,325,281...14,379,937 		JBrowse link
G Arl3 ARF like GTPase 3 located_in ISO (PMID:12417528) UniProt PMID:12417528 NCBI chrNW_004955485:7,739,556...7,772,582
Ensembl chrNW_004955485:7,733,211...7,775,687 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:16632484), (PMID:16682973), (PMID:23943788) MGI PMID:16632484 PMID:16682973 PMID:23943788 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212 		JBrowse link
G Cetn1 centrin 1 located_in ISO (PMID:15347651), (PMID:30120214) UniProt PMID:15347651 PMID:30120214 NCBI chrNW_004955402:9,381,400...9,382,158
Ensembl chrNW_004955402:9,381,570...9,382,088 		JBrowse link
G Cetn2 centrin 2 located_in ISO (PMID:15347651) MGI PMID:15347651 NCBI chrNW_004955498:8,131,356...8,135,751
Ensembl chrNW_004955498:8,131,295...8,135,751 		JBrowse link
G Cetn3 centrin 3 located_in ISO (PMID:15347651), (PMID:22031837), (PMID:24833722) MGI PMID:15347651 PMID:22031837 PMID:24833722 NCBI chrNW_004955418:21,206,387...21,220,984
Ensembl chrNW_004955418:21,206,387...21,222,456 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:26974433) UniProt PMID:26974433 NCBI chrNW_004955407:41,120,820...41,128,089
Ensembl chrNW_004955407:41,121,048...41,126,996 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO (PMID:17881533) MGI PMID:17881533 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Ift122 intraflagellar transport 122 located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Ift140 intraflagellar transport 140 located_in ISO (PMID:20368623), (PMID:24619649) MGI PMID:20368623 PMID:24619649 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:31637240)
(PMID:21307337)		 UniProt
MGI		 PMID:21307337 PMID:31637240 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751 		JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (PMID:31637240)
(PMID:20368623)		 UniProt
MGI		 PMID:20368623 PMID:31637240 NCBI chrNW_004955445:13,542,726...13,580,204
Ensembl chrNW_004955445:13,543,804...13,580,204 		JBrowse link
G Ift57 intraflagellar transport 57 located_in ISO (PMID:31637240)
(PMID:20368623)		 UniProt
MGI		 PMID:20368623 PMID:31637240 NCBI chrNW_004955427:8,814,298...8,871,671
Ensembl chrNW_004955427:8,814,298...8,871,720 		JBrowse link
G Ift88 intraflagellar transport 88 located_in ISO (PMID:19208653), (PMID:20368623) MGI PMID:19208653 PMID:20368623 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (PMID:15723066) HGNC-UCL PMID:15723066 NCBI chrNW_004955427:21,120,012...21,171,838
Ensembl chrNW_004955427:21,118,703...21,171,683 		JBrowse link
G Kiaa1549 KIAA1549 ortholog located_in ISO (PMID:30120214) UniProt PMID:30120214 NCBI chrNW_004955494:4,067,813...4,152,368
Ensembl chrNW_004955494:4,068,854...4,147,102 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) MGI PMID:19384852 NCBI chrNW_004955452:1,197,839...1,239,209 JBrowse link
G Kif3a kinesin family member 3A located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004955408:4,072,823...4,115,975
Ensembl chrNW_004955408:4,069,639...4,115,998 		JBrowse link
G Lca5 lebercilin LCA5 located_in ISO (PMID:21606596)
PMID:17546029		 UniProt PMID:17546029 PMID:21606596 RGD:14397561 NCBI chrNW_004955502:7,325,650...7,373,641
Ensembl chrNW_004955502:7,325,103...7,376,368 		JBrowse link
G Mak male germ cell associated kinase located_in ISO (PMID:21148103) MGI PMID:21148103 NCBI chrNW_004955465:3,556,733...3,615,126
Ensembl chrNW_004955465:3,556,490...3,616,203 		JBrowse link
G Myo7a myosin VIIA located_in ISO (PMID:10414956) MGI PMID:10414956 NCBI chrNW_004955414:14,576,356...14,647,500
Ensembl chrNW_004955414:14,576,356...14,647,500 		JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (PMID:16885411) UniProt PMID:16885411 NCBI chrNW_004955470:3,261,455...3,305,989
Ensembl chrNW_004955470:3,260,557...3,307,797 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:21078623) MGI PMID:21078623 NCBI chrNW_004955486:6,442,058...6,547,451
Ensembl chrNW_004955486:6,448,442...6,547,488 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:11767049)
(PMID:11773008), (PMID:14507858)		 MGI
UniProt		 PMID:11767049 PMID:11773008 PMID:14507858 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chrNW_004955403:52,180,612...52,200,569 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:10725384) MGI PMID:10725384 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (PMID:25398945) UniProt PMID:25398945 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498 		JBrowse link
G Rpgrip1l RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chrNW_004955433:11,321,504...11,423,981
Ensembl chrNW_004955433:11,322,590...11,424,569 		JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955542:401,081...444,304
Ensembl chrNW_004955542:401,081...443,962 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in ISO (PMID:25398945) UniProt PMID:25398945 NCBI chrNW_004955438:11,033,089...11,069,178
Ensembl chrNW_004955438:11,033,998...11,069,128 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 located_in ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004955416:8,643,177...8,684,469 JBrowse link
G Tbcc tubulin folding cofactor C located_in ISO (PMID:12417528) UniProt PMID:12417528 NCBI chrNW_004955437:8,808,021...8,809,598 JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) MGI PMID:20375344 NCBI chrNW_004955403:148,181...173,350
Ensembl chrNW_004955403:148,183...172,386 		JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in ISO (PMID:21159800) BHF-UCL PMID:21159800 NCBI chrNW_004955472:3,073,090...3,076,607 JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 located_in ISO (PMID:14520415) BHF-UCL PMID:14520415 NCBI chrNW_004955438:11,410,196...11,466,044
Ensembl chrNW_004955438:11,409,982...11,466,523 		JBrowse link
G Ush1g USH1 protein network component sans located_in ISO (PMID:17906286) MGI PMID:17906286 NCBI chrNW_004955553:1,788,443...1,795,139
Ensembl chrNW_004955553:1,788,401...1,796,441 		JBrowse link
G Ush2a usherin located_in ISO (PMID:17906286), (PMID:21212183) RGD
MGI		 PMID:16434480 PMID:17906286 PMID:21212183 RGD:1600128 NCBI chrNW_004955406:1,837,831...2,499,664
Ensembl chrNW_004955406:1,838,885...2,496,980 		JBrowse link
G Wdr19 WD repeat domain 19 located_in ISO (PMID:19208653) UniProt PMID:19208653 NCBI chrNW_004955443:8,053,847...8,122,918
Ensembl chrNW_004955443:8,053,847...8,123,110 		JBrowse link
G Whrn whirlin located_in ISO (PMID:17906286), (PMID:21212183) RGD
MGI		 PMID:16434480 PMID:17906286 PMID:21212183 RGD:1600128 NCBI chrNW_004955419:13,116,001...13,207,266
Ensembl chrNW_004955419:13,116,001...13,207,266 		JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in ISO (PMID:25664179) UniProt PMID:25664179 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 located_in ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004955416:8,643,177...8,684,469 JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212 		JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955470:3,261,455...3,305,989
Ensembl chrNW_004955470:3,260,557...3,307,797 		JBrowse link
G Nphp4 nephrocystin 4 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955486:6,442,058...6,547,451
Ensembl chrNW_004955486:6,448,442...6,547,488 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Rpgrip1 RPGR interacting protein 1 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in
is_active_in		 ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955438:11,033,089...11,069,178
Ensembl chrNW_004955438:11,033,998...11,069,128 		JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 located_in ISO (PMID:23943788), (PMID:9202155) UniProt PMID:9202155 PMID:23943788 NCBI chrNW_004955423:612,098...738,702
Ensembl chrNW_004955423:612,098...736,035 		JBrowse link
G Ahi1 Abelson helper integration site 1 located_in ISO (PMID:20592197) MGI PMID:20592197 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Arr3 arrestin 3 located_in ISO (PMID:10725384), (PMID:12486395) MGI PMID:10725384 PMID:12486395 NCBI chrNW_004955475:9,819,783...9,835,526
Ensembl chrNW_004955475:9,819,792...9,835,200 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chrNW_004955428:18,682,072...18,724,560
Ensembl chrNW_004955428:18,681,856...18,724,560 		JBrowse link
G Bsg basigin (Ok blood group) located_in ISO (PMID:25957687) UniProt PMID:25957687 NCBI chrNW_004955495:7,148,806...7,156,296 JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO RGD PMID:11526344 RGD:632484 NCBI chrNW_004955543:692,035...717,364
Ensembl chrNW_004955543:692,035...717,364 		JBrowse link
G Cep250 centrosomal protein 250 located_in ISO (PMID:28005958) UniProt PMID:28005958 NCBI chrNW_004955422:25,932,377...25,978,524 JBrowse link
G Cep290 centrosomal protein 290 located_in ISO (PMID:23943788) MGI PMID:23943788 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212 		JBrowse link
G Cerkl CERK like autophagy regulator located_in ISO (PMID:23142158) MGI PMID:23142158 NCBI chrNW_004955403:15,620,047...15,727,957 JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:27548899) UniProt PMID:27548899 NCBI chrNW_004955407:41,120,820...41,128,089
Ensembl chrNW_004955407:41,121,048...41,126,996 		JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in ISO (PMID:23023331) UniProt PMID:23023331 NCBI chrNW_004955450:660,655...674,726
Ensembl chrNW_004955450:659,383...675,634 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:10725384), (PMID:15634774), (PMID:20592197) MGI PMID:10725384 PMID:15634774 PMID:20592197 NCBI chrNW_004955443:615,061...649,693
Ensembl chrNW_004955443:639,096...649,606 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 located_in ISO (PMID:15634774) MGI PMID:15634774 NCBI chrNW_004955470:4,884,054...4,907,151
Ensembl chrNW_004955470:4,884,309...4,906,902 		JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004955433:15,467,042...15,556,471 JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 located_in ISO (PMID:15634774) MGI PMID:15634774 NCBI chrNW_004955417:4,164,328...4,288,516
Ensembl chrNW_004955417:4,168,766...4,300,437 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 located_in ISO (PMID:15316081) MGI PMID:15316081 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO (PMID:18367617), (PMID:20592197), (PMID:31696965)
(PMID:2534964)		 RGD
MGI
UniProt		 PMID:2534964 PMID:10396627 PMID:11931744 PMID:18367617 PMID:20592197 More... RGD:1599009 RGD:6893629 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 located_in ISO (PMID:2534964) RGD
UniProt		 PMID:2534964 PMID:17591908 RGD:2302146 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Gnb1 G protein subunit beta 1 located_in ISO (PMID:18367617) MGI PMID:18367617 NCBI chrNW_004955486:9,165,850...9,192,306
Ensembl chrNW_004955486:9,165,850...9,193,066 		JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO RGD PMID:10396627 PMID:11931744 RGD:1599009 RGD:6893629 NCBI chrNW_004955432:10,653,508...10,657,811
Ensembl chrNW_004955432:10,643,674...10,658,933 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004955404:343,009...353,683
Ensembl chrNW_004955404:343,009...353,683 		JBrowse link
G Guca1a guanylate cyclase activator 1A located_in ISO (PMID:22183407) RGD
MGI		 PMID:9620085 PMID:22183407 RGD:1599354 NCBI chrNW_004955437:8,370,553...8,382,640
Ensembl chrNW_004955437:8,376,091...8,382,640 		JBrowse link
G Guca1b guanylate cyclase activator 1B located_in ISO (PMID:22183407) RGD
MGI		 PMID:9620085 PMID:22183407 RGD:1599354 NCBI chrNW_004955437:8,384,692...8,390,946
Ensembl chrNW_004955437:8,382,299...8,390,946 		JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in ISO (PMID:7912093) UniProt PMID:7912093 NCBI chrNW_004955467:8,938,057...8,949,684
Ensembl chrNW_004955467:8,938,057...8,949,684 		JBrowse link
G Hnf1a HNF1 homeobox A located_in ISO (PMID:10090727) MGI PMID:10090727 NCBI chrNW_004955455:10,694,102...10,717,613
Ensembl chrNW_004955455:10,694,102...10,717,613 		JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (PMID:21307337) MGI PMID:21307337 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751 		JBrowse link
G Inha inhibin subunit alpha ISO RGD PMID:7596220 RGD:2290440 NCBI chrNW_004955453:13,902,443...13,905,008
Ensembl chrNW_004955453:13,902,277...13,905,008 		JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (PMID:15723066) HGNC-UCL PMID:15723066 NCBI chrNW_004955427:21,120,012...21,171,838
Ensembl chrNW_004955427:21,118,703...21,171,683 		JBrowse link
G Kif17 kinesin family member 17 located_in ISO (PMID:19384852) MGI PMID:19384852 NCBI chrNW_004955452:1,197,839...1,239,209 JBrowse link
G Lyar Ly1 antibody reactive located_in ISO (PMID:25735755) UniProt PMID:25735755 NCBI chrNW_004955514:5,358,843...5,375,990
Ensembl chrNW_004955514:5,358,843...5,376,112 		JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISO (PMID:24608321) UniProt PMID:24608321 NCBI chrNW_004955410:6,739,115...7,295,027
Ensembl chrNW_004955410:6,400,242...7,294,924 		JBrowse link
G Mak male germ cell associated kinase located_in ISO (PMID:21148103) MGI PMID:21148103 NCBI chrNW_004955465:3,556,733...3,615,126
Ensembl chrNW_004955465:3,556,490...3,616,203 		JBrowse link
G Map1a microtubule associated protein 1A located_in ISO (PMID:24664738) MGI PMID:24664738 NCBI chrNW_004955416:10,052,964...10,073,318
Ensembl chrNW_004955416:10,053,010...10,071,421 		JBrowse link
G Map1b microtubule associated protein 1B located_in ISO (PMID:24664738) MGI PMID:24664738 NCBI chrNW_004955575:914,607...1,020,971
Ensembl chrNW_004955575:913,723...1,021,028 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO RGD PMID:11861639 RGD:1299193 NCBI chrNW_004955470:2,065,468...2,167,909
Ensembl chrNW_004955470:2,065,411...2,167,909 		JBrowse link
G Myo3b myosin IIIB located_in ISO (PMID:19332056) MGI PMID:19332056 NCBI chrNW_004955449:4,128,816...4,546,651
Ensembl chrNW_004955449:4,129,823...4,546,296 		JBrowse link
G Myo5a myosin VA located_in ISO (PMID:14978221) MGI PMID:14978221 NCBI chrNW_004955409:2,409,503...2,530,539
Ensembl chrNW_004955409:2,428,815...2,530,012 		JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in		 ISO (PMID:8842737) UniProt PMID:8842737 NCBI chrNW_004955414:14,576,356...14,647,500
Ensembl chrNW_004955414:14,576,356...14,647,500 		JBrowse link
G Myrip myosin VIIA and Rab interacting protein located_in ISO (PMID:11964381) UniProt PMID:11964381 NCBI chrNW_004955420:29,542,479...29,697,646
Ensembl chrNW_004955420:29,540,027...29,696,504 		JBrowse link
G Nup42 nucleoporin 42 located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004955410:25,487,481...25,515,863
Ensembl chrNW_004955410:25,487,189...25,518,582 		JBrowse link
G Ocrl OCRL inositol polyphosphate-5-phosphatase located_in ISO (PMID:22543976) UniProt PMID:22543976 NCBI chrNW_004955473:5,429,084...5,482,377
Ensembl chrNW_004955473:5,431,395...5,482,385 		JBrowse link
G Opn1sw opsin 1, short wave sensitive located_in ISO (PMID:10725384), (PMID:12651948), (PMID:19332056), (PMID:22183407), (PMID:23351594), (PMID:23386608), (PMID:26420485) RGD
MGI		 PMID:10725384 PMID:12651948 PMID:19332056 PMID:20209167 PMID:22183407 More... RGD:6893562 NCBI chrNW_004955479:9,573,594...9,576,668
Ensembl chrNW_004955479:9,573,594...9,576,668 		JBrowse link
G Pcdh15 protocadherin related 15 located_in ISO (PMID:14570705) HGNC-UCL
MGI		 PMID:14570705 NCBI chrNW_004955425:8,443,523...9,203,177
Ensembl chrNW_004955425:8,428,680...8,899,028 		JBrowse link
G Pdc phosducin located_in ISO (PMID:18367617) MGI PMID:18367617 NCBI chrNW_004955406:24,857,791...24,873,057
Ensembl chrNW_004955406:24,857,642...24,873,307 		JBrowse link
G Pde6b phosphodiesterase 6B located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004955514:234,972...279,420
Ensembl chrNW_004955514:234,972...279,420 		JBrowse link
G Prcd photoreceptor disc component located_in ISO (PMID:23672200) HGNC PMID:23672200 NCBI chrNW_004955506:5,751,963...5,764,767
Ensembl chrNW_004955506:5,751,963...5,764,766 		JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:19228982) UniProt PMID:19228982 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589 		JBrowse link
G Prph peripherin located_in ISO (PMID:22183407) MGI PMID:22183407 NCBI chrNW_004955500:8,106,371...8,117,221
Ensembl chrNW_004955500:8,107,847...8,117,290 		JBrowse link
G Prph2 peripherin 2 located_in ISO (PMID:22183407), (PMID:26420485), (PMID:28053051) MGI PMID:22183407 PMID:26420485 PMID:28053051 NCBI chrNW_004955437:8,784,211...8,794,789
Ensembl chrNW_004955437:8,782,183...8,795,017 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 located_in ISO (PMID:12355421) MGI PMID:12355421 NCBI chrNW_004955419:5,678,750...5,699,305
Ensembl chrNW_004955419:5,678,694...5,699,305 		JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K located_in ISO (PMID:18308476) MGI PMID:18308476 NCBI chrNW_004955436:8,975,742...9,371,608
Ensembl chrNW_004955436:8,975,554...9,380,971 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family located_in ISO (PMID:11964381) UniProt PMID:11964381 NCBI chrNW_004955409:588,725...621,874
Ensembl chrNW_004955409:588,254...621,874 		JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:19883736 RGD:2314691 NCBI chrNW_004955449:2,172,354...2,453,367
Ensembl chrNW_004955449:2,171,924...2,462,451 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (PMID:29515371) UniProt PMID:29515371 NCBI chrNW_004955489:896,964...903,855 JBrowse link
G Rho rhodopsin located_in ISO (PMID:10725384), (PMID:12651948), (PMID:20592197), (PMID:21212183), (PMID:22183407), (PMID:22869374), (PMID:23351594), (PMID:23943788), (PMID:25224828), (PMID:26420485)
(PMID:11767049), (PMID:23704327)		 RGD
MGI		 PMID:8814134 PMID:10725384 PMID:11767049 PMID:12651948 PMID:20592197 More... RGD:6893595 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in ISO (PMID:20592197), (PMID:22183407), (PMID:26420485) MGI PMID:20592197 PMID:22183407 PMID:26420485 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Rp1 RP1 axonemal microtubule associated located_in ISO (PMID:14507858), (PMID:15269252) UniProt PMID:14507858 PMID:15269252 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rp1l1 RP1 like 1 located_in ISO (PMID:19657028) UniProt PMID:19657028 NCBI chrNW_004955403:52,180,612...52,200,569 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) UniProt PMID:12140192 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Sag S-antigen visual arrestin located_in ISO (PMID:22869374)
(PMID:3720866)		 RGD
MGI
UniProt		 PMID:3720866 PMID:10396627 PMID:22869374 RGD:6893629 NCBI chrNW_004955453:2,845,561...2,878,342
Ensembl chrNW_004955453:2,844,925...2,878,846 		JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 located_in ISO (PMID:19299912) BHF-UCL PMID:19299912 NCBI chrNW_004955422:15,295,800...15,818,067
Ensembl chrNW_004955422:15,295,772...15,814,711 		JBrowse link
G Stx3 syntaxin 3 located_in ISO (PMID:33974130) UniProt PMID:33974130 NCBI chrNW_004955511:4,183,210...4,219,528
Ensembl chrNW_004955511:4,196,114...4,218,961 		JBrowse link
G Tulp1 TUB like protein 1 located_in ISO (PMID:19218615) UniProt PMID:19218615 NCBI chrNW_004955437:3,405,218...3,417,079 JBrowse link
G Ush1c USH1 protein network component harmonin located_in ISO (PMID:14578428), (PMID:17906286) RGD
MGI		 PMID:14578428 PMID:17906286 RGD:1303964 NCBI chrNW_004955414:32,303,045...32,351,401
Ensembl chrNW_004955414:32,298,759...32,351,505 		JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr1 cadherin related family member 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004955510:3,709,206...3,727,448
Ensembl chrNW_004955510:3,708,723...3,728,926 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004955443:615,061...649,693
Ensembl chrNW_004955443:639,096...649,606 		JBrowse link
G Gnb1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004955486:9,165,850...9,192,306
Ensembl chrNW_004955486:9,165,850...9,193,066 		JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in ISO PMID:9153227
(PMID:21598940)		 UniProt PMID:9153227 PMID:21598940 RGD:1599625 NCBI chrNW_004955467:8,938,057...8,949,684
Ensembl chrNW_004955467:8,938,057...8,949,684 		JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20089132 RGD:5131540 NCBI chrNW_004955484:4,353,950...4,419,891
Ensembl chrNW_004955484:4,353,950...4,420,873 		JBrowse link
G Prcd photoreceptor disc component located_in ISO (PMID:27613864)
(PMID:27509380), (PMID:27613864)		 UniProt PMID:27509380 PMID:27613864 NCBI chrNW_004955506:5,751,963...5,764,767
Ensembl chrNW_004955506:5,751,963...5,764,766 		JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589 		JBrowse link
G Prph peripherin located_in ISO (PMID:10414956) MGI PMID:10414956 NCBI chrNW_004955500:8,106,371...8,117,221
Ensembl chrNW_004955500:8,107,847...8,117,290 		JBrowse link
G Rdh11 retinol dehydrogenase 11 NOT|located_in ISO (PMID:15790565) MGI PMID:15790565 NCBI chrNW_004955466:2,506,641...2,521,506
Ensembl chrNW_004955466:2,508,338...2,520,903 		JBrowse link
G Rho rhodopsin located_in ISO (PMID:19934218) RGD
UniProt		 PMID:2209754 PMID:19934218 RGD:6893561 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 located_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212 		JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 is_active_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212 		JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 located_in ISO (PMID:22802073) UniProt PMID:22802073 NCBI chrNW_004955443:615,061...649,693
Ensembl chrNW_004955443:639,096...649,606 		JBrowse link
G Gucy2f guanylate cyclase 2F, retinal located_in ISO (PMID:21078983) UniProt PMID:21078983 NCBI chrNW_004955490:6,331,247...6,437,563
Ensembl chrNW_004955490:6,331,247...6,437,563 		JBrowse link
G Rd3 RD3 regulator of GUCY2D located_in ISO (PMID:21078983) UniProt PMID:21078983 NCBI chrNW_004955489:896,964...903,855 JBrowse link
G Rho rhodopsin located_in ISO (PMID:19332056), (PMID:21444805), (PMID:23178122) MGI PMID:19332056 PMID:21444805 PMID:23178122 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
G Spata7 spermatogenesis associated 7 is_active_in ISO (PMID:29899041) MGI PMID:29899041 NCBI chrNW_004955438:11,033,089...11,069,178
Ensembl chrNW_004955438:11,033,998...11,069,128 		JBrowse link
G Tmem237 transmembrane protein 237 located_in ISO (PMID:20375344) MGI PMID:20375344 NCBI chrNW_004955403:148,181...173,350
Ensembl chrNW_004955403:148,183...172,386 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12815
    cellular anatomical structure 12663
      cell projection 2275
        plasma membrane bounded cell projection 2246
          cilium 869
            non-motile cilium 153
              9+0 non-motile cilium 117
                photoreceptor cell cilium + 103
paths to the root