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ONTOLOGY REPORT - ANNOTATIONS

Term:ciliary base
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Accession:GO:0097546 term browser browse the term
Definition:Area of the cilium (also called flagellum) where the basal body and the axoneme are anchored to the plasma membrane. The ciliary base encompasses the distal part of the basal body, transition fibers and transition zone and is structurally and functionally very distinct from the rest of the cilium. In this area proteins are sorted and filtered before entering the cilium, and many ciliary proteins localize specifically to this area.
Comment:Due to resolution issues, researchers are often unable to assign protein localization to more specific ciliary compartments such as the basal body, transition fibers or transition zone, and instead refer to 'ciliary base'. The terms GO:0036064 'ciliary basal body', GO:0097539 'ciliary transition fiber' and GO:0035869 'ciliary transition zone' represent strictly defined compartments at the ciliary base and should be used for annotation whenever possible. Also, note that cilia and eukaryotic flagella are deemed to be equivalent.
Synonyms:exact_synonym: cilial base;   cilium base;   flagellar base;   flagellum base


show annotations for term's descendants           Sort by:
ciliary base term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C8h11orf97 similar to human chromosome 11 open reading frame 97 is_active_in IBA
ISO 		GO_REF:0000033
(PMID:27914912) 		GO_Central
RGD		 PMID:27914912 GO_REF:0000033 NCBI chr 8:11,603,225...11,618,729
Ensembl chr 8:19,883,390...19,902,044 		JBrowse link
G Cep126 centrosomal protein 126 located_in
is_active_in 		ISO
IBA
IEA 		(PMID:24867236)
GO_REF:0000033
GO_REF:0000002 		RGD
GO_Central
InterPro		 PMID:24867236 GO_REF:0000002 GO_REF:0000033 NCBI chr 8:13,485,211...13,552,711
Ensembl chr 8:13,490,685...13,552,221 		JBrowse link
G Cfap144 cilia and flagella associated protein 144 is_active_in IBA
ISO 		GO_REF:0000033
(PMID:27914912) 		GO_Central
RGD		 PMID:27914912 GO_REF:0000033 NCBI chr10:43,509,823...43,519,693
Ensembl chr10:44,009,412...44,019,281 		JBrowse link
G Cfap36 cilia and flagella associated protein 36 is_active_in
located_in 		IBA
ISO
IEA 		GO_REF:0000033
(PMID:26455799)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:26455799 GO_REF:0000033 GO_REF:0000107 NCBI chr14:102,966,006...102,991,693
Ensembl chr14:107,166,947...107,192,406 		JBrowse link
G Cfap418 cilia and flagella associated protein 418 located_in ISO (PMID:22177090) RGD PMID:22177090 NCBI chr 5:23,996,395...24,015,609
Ensembl chr 5:28,792,692...28,812,887 		JBrowse link
G Cibar1 CBY1 interacting BAR domain containing 1 located_in ISO
IEA 		(PMID:27528616)
GO_REF:0000107 		RGD
Ensembl		 PMID:27528616 GO_REF:0000107 NCBI chr 5:25,613,993...25,632,440
Ensembl chr 5:30,410,511...30,429,893 		JBrowse link
G Cilk1 ciliogenesis associated kinase 1 located_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:25243405) 		UniProt
Ensembl
RGD		 PMID:25243405 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:87,868,156...87,922,995 		JBrowse link
G Clcn4 chloride voltage-gated channel 4 is_active_in ISO (PMID:26546361) RGD PMID:26546361 NCBI chr  X:23,729,194...23,795,391
Ensembl chr  X:27,290,868...27,356,939 		JBrowse link
G Cluap1 clusterin associated protein 1 located_in ISO (PMID:23742838) RGD PMID:23742838 NCBI chr10:11,587,963...11,619,711
Ensembl chr10:12,094,346...12,131,693 		JBrowse link
G Cplane2 ciliogenesis and planar polarity effector complex subunit 2 is_active_in ISO
IEA 		(PMID:29038301)
GO_REF:0000107 		RGD
Ensembl		 PMID:29038301 GO_REF:0000107 NCBI chr 5:153,515,507...153,516,455
Ensembl chr 5:158,798,287...158,804,132 		JBrowse link
G Disc1 DISC1 scaffold protein located_in ISO
IEA 		(PMID:20531939)
GO_REF:0000107 		RGD
Ensembl		 PMID:20531939 GO_REF:0000107 NCBI chr19:69,911,548...70,120,970
Ensembl chr19:69,911,976...70,120,970 		JBrowse link
G Dnali1 dynein, axonemal, light intermediate chain 1 located_in
is_active_in 		ISO
IBA 		(PMID:29317443)
GO_REF:0000033 		RGD
GO_Central		 PMID:29317443 GO_REF:0000033 NCBI chr 5:137,318,475...137,327,313
Ensembl chr 5:142,603,134...142,611,993 		JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 located_in ISO
IEA
IBA 		(PMID:23910462), (PMID:25830415)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:23910462 PMID:25830415 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:137,133,418...137,189,937
Ensembl chr 6:143,276,441...143,331,773 		JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B located_in ISO (PMID:25830415) RGD PMID:25830415 NCBI chr11:81,864,195...81,872,555
Ensembl chr11:81,864,195...81,872,555 		JBrowse link
G Dzip1 DAZ interacting zinc finger protein 1 located_in ISO
IEA 		(PMID:25860027)
GO_REF:0000107 		RGD
Ensembl		 PMID:25860027 GO_REF:0000107 NCBI chr15:102,363,392...102,417,085
Ensembl chr15:102,363,392...102,417,085 		JBrowse link
G Enkd1 enkurin domain containing 1 located_in ISO (PMID:29257953) RGD PMID:29257953 NCBI chr19:50,501,963...50,506,447
Ensembl chr19:50,501,963...50,506,942 		JBrowse link
G Fank1 fibronectin type III and ankyrin repeat domains 1 is_active_in ISO
IEA 		(PMID:27914912)
GO_REF:0000107 		RGD
Ensembl		 PMID:27914912 GO_REF:0000107 NCBI chr 1:188,577,512...188,685,501
Ensembl chr 1:198,007,547...198,115,561 		JBrowse link
G Ift122 intraflagellar transport 122 located_in ISO (PMID:21209331) RGD PMID:21209331 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:150,539,786...150,648,052 		JBrowse link
G Ift20 intraflagellar transport 20 located_in
is_active_in 		ISO
IBA
IEA 		(PMID:31637240)
(PMID:15337773)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:15337773 PMID:31637240 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,930,629...63,936,174
Ensembl chr10:63,930,681...63,936,172 		JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO
IEA 		(PMID:31637240)
(PMID:16775004)
GO_REF:0000107 		RGD
Ensembl		 PMID:16775004 PMID:31637240 GO_REF:0000107 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:172,092,017...172,116,493 		JBrowse link
G Ift56 intraflagellar transport 56 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:67,090,622...67,154,707
Ensembl chr 4:68,057,580...68,119,338 		JBrowse link
G Ift57 intraflagellar transport 57 located_in ISO
IEA 		(PMID:31637240)
GO_REF:0000107 		RGD
Ensembl		 PMID:31637240 GO_REF:0000107 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:64,528,349...64,593,545 		JBrowse link
G Ift88 intraflagellar transport 88 is_active_in
located_in 		IBA
ISO 		GO_REF:0000033
(PMID:16775004), (PMID:19654211), (PMID:21653639) 		GO_Central
RGD		 PMID:16775004 PMID:19654211 PMID:21653639 GO_REF:0000033 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:35,688,927...35,781,634 		JBrowse link
G Invs inversin located_in ISO (PMID:20169535) RGD PMID:20169535 NCBI chr 5:62,610,916...62,763,813
Ensembl chr 5:67,406,485...67,559,350 		JBrowse link
G Kcnf1 potassium voltage-gated channel modifier subfamily F member 1 is_active_in ISO
IEA 		(PMID:26546361)
GO_REF:0000107 		RGD
Ensembl		 PMID:26546361 GO_REF:0000107 NCBI chr 6:39,962,301...39,964,979
Ensembl chr 6:45,688,623...45,695,536 		JBrowse link
G Kcnj10 potassium inwardly-rectifying channel, subfamily J, member 10 is_active_in ISO (PMID:26546361) RGD PMID:26546361 NCBI chr13:87,334,510...87,367,747
Ensembl chr13:87,334,216...87,368,678 		JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 is_active_in ISO
IEA 		(PMID:26546361)
GO_REF:0000107 		RGD
Ensembl		 PMID:26546361 GO_REF:0000107 NCBI chr 1:207,721,134...208,054,073
Ensembl chr 1:207,721,131...208,054,072 		JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 located_in ISS
ISO 		GO_REF:0000024
(PMID:24608321) 		UniProt
RGD		 PMID:24608321 GO_REF:0000024 NCBI chr 4:14,386,389...15,870,036
Ensembl chr 4:15,278,518...16,762,199 		JBrowse link
G Mlf1 myeloid leukemia factor 1 is_active_in ISO
IEA 		(PMID:27914912)
GO_REF:0000107 		RGD
Ensembl		 PMID:27914912 GO_REF:0000107 NCBI chr 2:151,648,492...151,681,654
Ensembl chr 2:153,958,546...153,994,220 		JBrowse link
G Mok MOK protein kinase located_in ISO (PMID:25243405) RGD PMID:25243405 NCBI chr 6:135,645,018...135,675,894
Ensembl chr 6:135,645,018...135,676,174 		JBrowse link
G Nek8 NIMA-related kinase 8 located_in ISO
IEA 		(PMID:20169535)
GO_REF:0000107 		RGD
Ensembl		 PMID:20169535 GO_REF:0000107 NCBI chr10:63,060,868...63,073,546
Ensembl chr10:63,558,788...63,570,488 		JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (PMID:20169535) RGD PMID:20169535 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:135,413,927...135,469,505 		JBrowse link
G Nphp3 nephrocystin 3 located_in
is_active_in 		ISO
IBA
IEA 		(PMID:20169535)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:20169535 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:113,500,509...113,541,179 		JBrowse link
G Nphp4 nephrocystin 4 is_active_in
located_in 		IBA
ISO
IEA 		GO_REF:0000033
(PMID:20169535)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:20169535 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:168,271,073...168,358,242 		JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 located_in ISO (PMID:23849778) RGD PMID:23849778 NCBI chr17:55,216,877...55,409,872
Ensembl chr17:59,910,757...60,103,547 		JBrowse link
G Pqbp1 polyglutamine binding protein 1 IDA RGD PMID:23994472 RGD:9685166 NCBI chr  X:17,275,445...17,280,018
Ensembl chr  X:17,275,759...17,280,016 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha located_in IEA
ISO 		GO_REF:0000107
(PMID:22007132) 		Ensembl
RGD		 PMID:22007132 GO_REF:0000107 NCBI chr19:41,059,843...41,083,189
Ensembl chr19:41,059,843...41,086,494 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta located_in ISO
IEA 		(PMID:22007132)
GO_REF:0000107 		RGD
Ensembl		 PMID:22007132 GO_REF:0000107 NCBI chr 2:238,297,140...238,389,317
Ensembl chr 2:238,300,127...238,386,315 		JBrowse link
G Prkar2b protein kinase cAMP-dependent type II regulatory subunit beta located_in ISO
IEA 		(PMID:22007132)
GO_REF:0000107 		RGD
Ensembl		 PMID:22007132 GO_REF:0000107 NCBI chr 6:48,563,659...48,653,933
Ensembl chr 6:54,291,151...54,381,411 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in IEA
ISO 		GO_REF:0000107
(PMID:24947469) 		Ensembl
RGD		 PMID:24947469 GO_REF:0000107 NCBI chr16:17,654,027...17,675,385
Ensembl chr16:17,688,050...17,709,477 		JBrowse link
G Spaca9 sperm acrosome associated 9 is_active_in IBA
ISO 		GO_REF:0000033
(PMID:27914912) 		GO_Central
RGD		 PMID:27914912 GO_REF:0000033 NCBI chr 3:12,019,376...12,028,801
Ensembl chr 3:32,417,350...32,426,934 		JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 located_in ISO
IEA
ISS 		(PMID:26487268)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:26487268 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:99,521,176...99,557,966
Ensembl chr 9:99,521,179...99,557,963 		JBrowse link
G Ttbk2 tau tubulin kinase 2 located_in ISO
IEA 		(PMID:29038301)
GO_REF:0000107 		RGD
Ensembl		 PMID:29038301 GO_REF:0000107 NCBI chr 3:128,144,851...128,256,630
Ensembl chr 3:128,144,851...128,258,738 		JBrowse link
G Tulp3 TUB like protein 3 located_in ISO
IEA 		(PMID:20889716)
GO_REF:0000107 		RGD
Ensembl		 PMID:20889716 GO_REF:0000107 NCBI chr 4:161,590,478...161,632,244
Ensembl chr 4:163,276,583...163,318,390 		JBrowse link
G Ush1g USH1 protein network component sans located_in ISO
IEA 		(PMID:24608321)
GO_REF:0000107 		RGD
Ensembl		 PMID:24608321 GO_REF:0000107 NCBI chr10:100,559,721...100,563,590
Ensembl chr10:101,057,208...101,062,564 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21544
    cellular anatomical structure 21390
      ciliary base 45
Path 2
Term Annotations click to browse term
  cellular_component 21544
    cellular anatomical structure 21390
      organelle 14482
        membrane-bounded organelle 13071
          cilium 1017
            ciliary base 45
paths to the root