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ONTOLOGY REPORT - ANNOTATIONS

Term:spliceosomal tri-snRNP complex
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Accession:GO:0097526 term browser browse the term
Definition:A spliceosomal snRNP complex that is formed by the association of the U4/U6 (or U4atac/U6atac) snRNP with the U5 snRNP.


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spliceosomal tri-snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07042226.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr  X:144,806,986...144,812,552 JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:8,856,698...8,859,113
Ensembl chr 7:8,856,489...8,859,119 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826 		JBrowse link
G Snrpgl1 small nuclear ribonucleoprotein polypeptide G like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:87,982,629...87,983,056
Ensembl chr 1:87,982,626...87,983,118
Ensembl chr 4:87,982,626...87,983,118 		JBrowse link
U4/U6 x U5 tri-snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC126899.1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 Ensembl chr19:40,146,975...40,147,500 JBrowse link
G Cd2bp2 Cd2 (cytoplasmic tail) binding protein 2 NOT|part_of ISO (PMID:15840814) RGD PMID:15840814 NCBI chr 1:181,809,399...181,815,269
Ensembl chr 1:181,809,406...181,813,448 		JBrowse link
G Ddx23 DEAD-box helicase 23 part_of ISO (PMID:30975767), (PMID:9409622) RGD PMID:9409622 PMID:30975767 NCBI chr 7:129,797,620...129,814,909
Ensembl chr 7:129,797,614...129,814,949 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 part_of IBA
ISO		 GO_REF:0000033
(PMID:23793891), (PMID:30975767)		 GO_Central
RGD		 PMID:23793891 PMID:30975767 GO_REF:0000033 NCBI chr10:87,804,893...87,852,181
Ensembl chr10:87,804,892...87,846,079 		JBrowse link
G ENSRNOG00000064062 part_of IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr19:33,454,456...33,455,388 JBrowse link
G ENSRNOG00000069332 part_of IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 2:89,339,501...89,339,701 JBrowse link
G Hars2 histidyl-tRNA synthetase 2, mitochondrial part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:28,398,790...28,408,075
Ensembl chr18:28,398,795...28,414,747 		JBrowse link
G Linc00176 long intergenic non-protein coding RNA 176 part_of IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 3:168,771,350...168,775,133
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO		 GO_REF:0000033
(PMID:10523320), (PMID:26912367), (PMID:30975767)		 GO_Central
RGD		 PMID:10523320 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr20:3,843,467...3,847,217
Ensembl chr20:3,843,466...3,847,266 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO		 GO_REF:0000033
(PMID:10369684), (PMID:10523320), (PMID:26912367), (PMID:30975767)		 GO_Central
RGD		 PMID:10369684 PMID:10523320 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr 4:124,021,023...124,027,269
Ensembl chr 4:124,021,023...124,027,269 		JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:26912367), (PMID:30975767) RGD PMID:26912367 PMID:30975767 NCBI chr16:18,755,481...18,761,106
Ensembl chr16:18,755,484...18,760,926 		JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO		 GO_REF:0000033
(PMID:26912367), (PMID:30975767)		 GO_Central
RGD		 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr 4:85,951,073...85,954,289
Ensembl chr 6:104,652,477...104,654,165
Ensembl chr 4:104,652,477...104,654,165 		JBrowse link
G Lsm5l1 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:1,339,769...1,340,198
Ensembl chr16:1,339,784...1,340,056 		JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
ISO		 GO_REF:0000033
(PMID:26912367), (PMID:30975767)		 GO_Central
RGD		 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr19:29,098,254...29,112,858
Ensembl chr13:42,114,032...42,116,484
Ensembl chr19:42,114,032...42,116,484 		JBrowse link
G Lsm6l1 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:42,114,013...42,116,559
Ensembl chr13:42,114,032...42,116,484 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO (PMID:26912367), (PMID:30975767) RGD PMID:26912367 PMID:30975767 NCBI chr 7:8,856,698...8,859,113
Ensembl chr 7:8,856,489...8,859,119 		JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated part_of IBA
ISO		 GO_REF:0000033
(PMID:26912367), (PMID:30975767)		 GO_Central
RGD		 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr 4:47,306,259...47,312,125
Ensembl chr 4:47,306,295...47,314,293 		JBrowse link
G Ppih peptidylprolyl isomerase H part_of ISO (PMID:9570313) RGD PMID:9570313 NCBI chr 5:132,906,324...132,924,341
Ensembl chr 5:132,906,328...132,924,267 		JBrowse link
G Prpf18 pre-mRNA processing factor 18 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr17:73,630,560...73,661,210
Ensembl chr17:73,630,571...73,690,979 		JBrowse link
G Prpf3 pre-mRNA processing factor 3 part_of ISO
IBA		 (PMID:26912367)
GO_REF:0000033		 RGD
GO_Central		 PMID:26912367 GO_REF:0000033 NCBI chr 2:183,379,041...183,403,526
Ensembl chr 2:183,378,718...183,403,489 		JBrowse link
G Prpf31 pre-mRNA processing factor 31 part_of ISO (PMID:11867543), (PMID:23793891), (PMID:26912367), (PMID:30975767) RGD PMID:11867543 PMID:23793891 PMID:26912367 PMID:30975767 NCBI chr 1:65,575,887...65,587,561
Ensembl chr 1:65,575,887...65,587,873 		JBrowse link
G Prpf4 pre-mRNA splicing tri-snRNP complex factor 4 part_of IBA
ISO		 GO_REF:0000033
(PMID:23793891), (PMID:30975767)		 GO_Central
RGD		 PMID:23793891 PMID:30975767 GO_REF:0000033 NCBI chr 5:75,859,934...75,873,924
Ensembl chr 5:75,859,924...75,873,919 		JBrowse link
G Prpf6 pre-mRNA processing factor 6 part_of IEA
ISO
IBA		 GO_REF:0000107
(PMID:10788320), (PMID:30975767)
GO_REF:0000033		 Ensembl
RGD
GO_Central		 PMID:10788320 PMID:30975767 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:168,706,952...168,771,191
Ensembl chr 3:168,704,299...168,774,991 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 part_of ISO (PMID:23793891), (PMID:30975767) RGD PMID:23793891 PMID:30975767 NCBI chr10:60,331,494...60,354,606
Ensembl chr10:60,331,494...60,354,606 		JBrowse link
G Rbm42 RNA binding motif protein 42 part_of ISO (PMID:30975767) RGD PMID:30975767 NCBI chr 1:85,898,618...85,908,569
Ensembl chr 1:85,898,625...85,908,573 		JBrowse link
G Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP part_of IEA
IBA
ISO		 GO_REF:0000002
GO_REF:0000033
(PMID:30975767)		 InterPro
GO_Central
RGD		 PMID:30975767 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:202,690,472...202,699,136
Ensembl chr 1:202,690,459...202,699,136 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein NOT|located_in ISO (PMID:12032085) RGD PMID:12032085 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 part_of IEA
ISO		 GO_REF:0000107
(PMID:23793891), (PMID:30975767)		 Ensembl
RGD		 PMID:23793891 PMID:30975767 GO_REF:0000107 NCBI chr 3:114,428,854...114,458,194
Ensembl chr 3:114,428,854...114,458,182 		JBrowse link
G Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 part_of ISO (PMID:30975767) RGD PMID:30975767 NCBI chr 4:119,123,676...119,133,234
Ensembl chr 4:119,121,877...119,133,234 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 part_of ISO (PMID:30975767) RGD PMID:30975767 NCBI chr 5:142,700,632...142,733,776
Ensembl chr 5:142,700,534...142,733,776 		JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A part_of ISO (PMID:30975767) RGD PMID:30975767 NCBI chr 1:82,481,770...82,490,540
Ensembl chr 1:82,481,770...82,490,538 		JBrowse link
G Snrpb small nuclear ribonucleoprotein polypeptides B and B1 part_of ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:26912367), (PMID:30975767)		 UniProt
GO_Central
RGD		 PMID:26912367 PMID:30975767 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:117,369,816...117,379,344
Ensembl chr 3:117,370,100...117,379,339 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 polypeptide part_of ISO (PMID:26912367), (PMID:30975767) RGD PMID:26912367 PMID:30975767 NCBI chr18:1,696,838...1,707,400
Ensembl chr18:1,696,852...1,708,256 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 polypeptide part_of IBA
ISO		 GO_REF:0000033
(PMID:26912367), (PMID:30975767)		 GO_Central
RGD		 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr 1:78,798,377...78,801,227
Ensembl chr 1:78,798,377...78,803,351 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 polypeptide part_of ISO (PMID:26912367), (PMID:30975767) RGD PMID:26912367 PMID:30975767 NCBI chr20:13,130,112...13,145,947
Ensembl chr20:13,130,119...13,145,978 		JBrowse link
G Snrpe small nuclear ribonucleoprotein polypeptide E part_of IBA
ISO		 GO_REF:0000033
(PMID:26912367), (PMID:30975767)		 GO_Central
RGD		 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr13:45,050,986...45,057,231
Ensembl chr13:45,050,986...45,057,310
Ensembl chr 8:45,050,986...45,057,310 		JBrowse link
G Snrpepl2 small nuclear ribonucleoprotein polypeptide E like 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:133,709,656...133,710,137
Ensembl chr 1:133,709,797...133,710,075 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO (PMID:26912367), (PMID:30975767) RGD PMID:26912367 PMID:30975767 NCBI chr 7:28,130,427...28,137,129
Ensembl chr 7:28,130,427...28,137,129 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO (PMID:26912367), (PMID:30975767) RGD PMID:26912367 PMID:30975767 NCBI chr 4:118,812,278...118,819,827
Ensembl chr 4:118,812,252...118,819,826 		JBrowse link
G Snrpn small nuclear ribonucleoprotein polypeptide N part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:111,101,327...111,123,400
Ensembl chr 1:111,101,329...111,123,634 		JBrowse link
G Snu13 small nuclear ribonucleoprotein 13 part_of ISS
IBA
ISO		 GO_REF:0000024
GO_REF:0000033
(PMID:26912367), (PMID:30975767)		 UniProt
GO_Central
RGD		 PMID:26912367 PMID:30975767 GO_REF:0000024 GO_REF:0000033 NCBI chr 7:113,565,293...113,570,887
Ensembl chr 7:113,565,295...113,570,872
Ensembl chr 1:113,565,295...113,570,872 		JBrowse link
G Snu13l1 small nuclear ribonucleoprotein 13 like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,624,087...150,624,525
Ensembl chr  X:150,624,087...150,624,473 		JBrowse link
G Txnl4a thioredoxin-like 4A part_of ISO (PMID:26912367), (PMID:30975767) RGD PMID:26912367 PMID:30975767 NCBI chr18:73,659,107...73,674,893
Ensembl chr18:73,659,107...73,674,893 		JBrowse link
G Txnl4b thioredoxin-like 4B part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:37,530,157...37,539,827
Ensembl chr19:37,530,152...37,538,521 		JBrowse link
G Usp39 ubiquitin specific peptidase 39 part_of ISO (PMID:11350945), (PMID:26912367), (PMID:30975767) RGD PMID:11350945 PMID:26912367 PMID:30975767 NCBI chr 4:104,373,948...104,406,359
Ensembl chr 4:104,373,955...104,406,359 		JBrowse link
G Zfp341 zinc finger protein 341 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:143,122,699...143,156,250
Ensembl chr 3:143,119,093...143,156,249 		JBrowse link
G Zmat2 zinc finger, matrin type 2 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr18:28,409,606...28,414,241
Ensembl chr18:28,398,795...28,414,747 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20814
    protein-containing complex 6438
      nuclear protein-containing complex 1306
        small nuclear ribonucleoprotein complex 85
          spliceosomal snRNP complex 77
            spliceosomal tri-snRNP complex 49
              U4/U6 x U5 tri-snRNP complex 47
              U4atac/U6atac x U5 tri-snRNP complex 0
Path 2
Term Annotations click to browse term
  cellular_component 20814
    cellular anatomical structure 20574
      intracellular anatomical structure 15184
        intracellular organelle 13599
          intracellular membrane-bounded organelle 12057
            nucleus 7485
              nuclear protein-containing complex 1306
                small nuclear ribonucleoprotein complex 85
                  spliceosomal snRNP complex 77
                    spliceosomal tri-snRNP complex 49
                      U4/U6 x U5 tri-snRNP complex 47
                      U4atac/U6atac x U5 tri-snRNP complex 0
paths to the root