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ONTOLOGY REPORT - ANNOTATIONS


Term:INO80-type complex
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Accession:GO:0097346 term browser browse the term
Definition:A chromatin remodeling protein complex initially purified from S. cerevisiae and containing more than 10 subunits, including the SWR1-related complexes. INO80 (inositol requiring 80)-type complexes have diverse functions, including promoting transcriptional activation and DNA repair.



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Ino80 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A part_of ISO (PMID:18026119), (PMID:21303910) RGD PMID:18026119 PMID:21303910 NCBI chr 2:117,413,206...117,436,758 JBrowse link
G Actr5 actin related protein 5 part_of ISO
IBA
(PMID:18026119), (PMID:21303910)
GO_REF:0000033
RGD
GO_Central
PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr 3:167,702,299...167,715,736 JBrowse link
G Actr8 actin related protein 8 part_of ISO
IBA
(PMID:18026119), (PMID:21303910)
GO_REF:0000033
RGD
GO_Central
PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr16:5,170,649...5,192,883 JBrowse link
G Ino80 INO80 complex ATPase subunit part_of ISO
IBA
(PMID:18026119), (PMID:21303910)
GO_REF:0000033
RGD
GO_Central
PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr 3:126,822,280...126,919,532 JBrowse link
G Ino80b INO80 complex subunit B part_of ISO
IBA
(PMID:21303910)
GO_REF:0000033
RGD
GO_Central
PMID:21303910 GO_REF:0000033 NCBI chr 4:117,185,427...117,188,930 JBrowse link
G Ino80c INO80 complex subunit C part_of ISO
IEA
IBA
(PMID:21303910)
GO_REF:0000002
GO_REF:0000033
RGD
InterPro
GO_Central
PMID:21303910 GO_REF:0000002 GO_REF:0000033 NCBI chr18:15,653,508...15,752,455 JBrowse link
G Ino80d INO80 complex subunit D part_of ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 9:71,940,941...72,007,879 JBrowse link
G Ino80e INO80 complex subunit E part_of ISO
IEA
IBA
(PMID:21303910)
GO_REF:0000002
GO_REF:0000033
RGD
InterPro
GO_Central
PMID:21303910 GO_REF:0000002 GO_REF:0000033 NCBI chr 1:190,891,315...190,902,902 JBrowse link
G Mcrs1 microspherule protein 1 part_of ISO (PMID:21303910) RGD PMID:21303910 NCBI chr 7:132,262,719...132,271,533 JBrowse link
G Nfrkb nuclear factor related to kappa B binding protein part_of
located_in
ISO (PMID:21303910)
(PMID:18922472)
RGD PMID:18922472 PMID:21303910 NCBI chr 8:38,089,574...38,121,506 JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 part_of ISO
IBA
(PMID:18026119), (PMID:21303910)
GO_REF:0000033
RGD
GO_Central
PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr 4:122,489,754...122,524,666 JBrowse link
G Ruvbl1-ps1 RuvB-like AAA ATPase 1, pseudogene 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:1,640,138...1,641,886 JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 part_of ISO
IBA
(PMID:18026119), (PMID:21303910)
GO_REF:0000033
RGD
GO_Central
PMID:18026119 PMID:21303910 GO_REF:0000033 NCBI chr 1:105,038,487...105,051,851 JBrowse link
G Tfpt TCF3 fusion partner part_of IEA
ISO
IBA
GO_REF:0000107
(PMID:21303910)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:21303910 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:74,502,994...74,512,766 JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 part_of
located_in
ISO (PMID:21303910)
(PMID:18922472)
RGD PMID:18922472 PMID:21303910 NCBI chr13:58,070,947...58,106,825 JBrowse link
G Yy1 YY1 transcription factor part_of ISO (PMID:18026119), (PMID:21303910) RGD PMID:18026119 PMID:21303910 NCBI chr 6:133,471,615...133,500,875 JBrowse link
Swr1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actr6 actin related protein 6 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:26,037,574...26,058,362 JBrowse link
G Anp32e acidic nuclear phosphoprotein 32 family member E part_of ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:24463511)
UniProt
Ensembl
RGD
PMID:24463511 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:186,161,520...186,177,984 JBrowse link
G Brd8 bromodomain containing 8 part_of ISO (PMID:24463511) RGD PMID:24463511 NCBI chr18:26,455,824...26,504,106 JBrowse link
G Cfdp1 craniofacial development protein 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr19:39,718,313...39,823,824 JBrowse link
G Cfdp1l1 craniofacial development protein 1 like 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:40,254,717...40,255,884 JBrowse link
G Dmap1 DNA methyltransferase 1-associated protein 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:136,380,211...136,388,229 JBrowse link
G Ep400 E1A binding protein p400 part_of ISO
IBA
(PMID:24463511)
GO_REF:0000033
RGD
GO_Central
PMID:24463511 GO_REF:0000033 NCBI chr12:51,551,665...51,658,635 JBrowse link
G Ing3 inhibitor of growth family, member 3 part_of ISS
ISO
GO_REF:0000024
(PMID:24463511)
UniProt
RGD
PMID:24463511 GO_REF:0000024 NCBI chr 4:51,439,218...51,469,502 JBrowse link
G Kat5 lysine acetyltransferase 5 part_of ISO
IEA
ISS
(PMID:24463511)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:24463511 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:212,325,089...212,332,640 JBrowse link
G Ruvbl1 RuvB-like AAA ATPase 1 part_of ISO
IBA
ISS
(PMID:24463511)
GO_REF:0000033
GO_REF:0000024
RGD
GO_Central
UniProt
PMID:24463511 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:122,489,754...122,524,666 JBrowse link
G Ruvbl1-ps1 RuvB-like AAA ATPase 1, pseudogene 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:1,640,138...1,641,886 JBrowse link
G Ruvbl2 RuvB-like AAA ATPase 2 part_of ISO
IBA
(PMID:24463511)
GO_REF:0000033
RGD
GO_Central
PMID:24463511 GO_REF:0000033 NCBI chr 1:105,038,487...105,051,851 JBrowse link
G Srcap Snf2-related CREBBP activator protein part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:191,554,043...191,607,096 JBrowse link
G Trrap transformation/transcription domain-associated protein part_of ISO (PMID:24463511) RGD PMID:24463511 NCBI chr12:14,851,758...14,941,444 JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 part_of IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:25,323,292...25,329,566 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21321
    protein-containing complex 6790
      nuclear protein-containing complex 1338
        SWI/SNF superfamily-type complex 96
          INO80-type complex 28
            Ino80 complex 16
            Swr1 complex 15
Path 2
Term Annotations click to browse term
  cellular_component 21321
    cellular anatomical structure 21026
      organelle 14240
        membraneless organelle 5379
          intracellular membraneless organelle 5379
            chromosome 1403
              chromatin 830
                SWI/SNF superfamily-type complex 96
                  INO80-type complex 28
                    Ino80 complex 16
                    Swr1 complex 15
paths to the root