Welcome
{{ username}}
Message Center
{{ messageCount }} Messages
Go to Message Center
Watched Genes
{{$index + 1}}.
{{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})
Modify Subscription
Unsubscribe
Watched Ontology Terms
{{$index + 1}}.
{{ watchedTerm.term }} ({{watchedTerm.accId}})
Modify Subscription
Unsubscribe
{{gene.symbol}}:
{{ gene.description }}
×
Save List to My RGD
Create Name:
Description:
You must be logged in to use this feature
{{ loginError }}
{{ watchLinkText }}
Select categories you would like to watch. Updates to this gene will be sent to {{ username }}
{{geneWatchAttr}}
Analyze
Gene
Strain
QTL
List
×
Gene Annotator (Functional Annotation)
unavailable
Gene Annotator (Annotation Distribution)
unavailable
Variant Visualizer (Genomic Variants)
unavailble
Variant Visualizer (Genomic Variants)
unavailable
Gene Annotator (Functional Annotation)
Gene Annotator (Annotation Distribution)
Variant Visualizer (Genomic Variants)
InterViewer (Protein-Protein Interactions)
unavailable
Gviewer (Genome Viewer)
unavailable
Variant Visualizer (Damaging Variants) unavailble
Variant Visualizer (Damaging Variants)
unavailable
InterViewer (Protein-Protein Interactions)
GViewer (Genome Viewer)
Variant Visualizer (Damaging Variants)
Gene Annotator (Annotation Comparison)
unavailable
OLGA (Gene List Generator)
unavailable
Gene Annotator (Annotation Comparison)
OLGA (Gene List Generator)
Excel (Download)
MOET (Multi-Ontology Enrichement)
unavailable
GOLF (Gene-Ortholog Location Finder)
unavailable
MOET (Multi-Ontology Enrichement)
GOLF (Gene-Ortholog Location Finder)
x
Send Message
x
Send us a Message
Your email
Message
Send
Submit Data
|
Help
|
Video Tutorials
|
News
|
Publications
|
Download
|
REST API
|
Citing RGD
|
Contact
Home
Search RGD
Grant Resources
Citing RGD
About Us
Contact Us
Data
Genes
Variants
Community Projects
QTLs
Strains
Markers
Genome Information
Ontologies
Cell Lines
References
Download
Submit Data
Analysis & Visualization
OntoMate (Literature Search)
JBrowse (Genome Browser)
Synteny Browser (VCMap)
Variant Visualizer
Multi-Ontology Enrichment (MOET)
Gene-Ortholog Location Finder (GOLF)
InterViewer (Protein-Protein Interactions)
PhenoMiner (Quatitative Phenotypes)
Gene Annotator
OLGA (Gene List Generator)
AllianceMine
GViewer (Genome Viewer)
Diseases
Aging & Age-Related Disease
Cancer & Neoplastic Disease
Cardiovascular Disease
Coronavirus Disease
Developmental Disease
Diabetes
Hematologic Disease
Immune & Inflammatory Disease
Infectious Disease
Liver Disease
Neurological Disease
Obesity & Metabolic Syndrome
Renal Disease
Respiratory Disease
Sensory Organ Disease
Phenotypes & Models
Find Models
Genetic Models
Autism Models
Rat PhenoMiner (Quantitative Phenotypes)
Chinchilla PhenoMiner
Expected Ranges (Quantitative Phenotype)
PhenoMiner Term Comparison
Hybrid Rat Diversity Panel
Phenotypes
Phenotypes in Other Animal Models
Animal Husbandry
Strain Medical Records
Phylogenetics
Strain Availability
Calendar
Rats 101
Submissions
Photo Archive
Pathways
Community
Rat Community Forum
Directory of Rat Laboratories
Video Tutorials
News
RGD Publications
RGD Presentations Archive
Nomenclature Guidelines
Resource Links
Laboratory Resources
Employment Resources
Advanced Search (OLGA)
ONTOLOGY REPORT - ANNOTATIONS
{{ watchLinkText }}
Term:
phagocytic vesicle lumen
go back to main search page
Accession:
GO:0097013
browse the term
Definition:
The volume enclosed by the membrane of a phagocytic vesicle.
show annotations for term's descendants Sort by:
symbol
object name
position
reference
evidence
↑ asc
↓ desc
Rat (0)
Mouse (0)
Human (5)
Chinchilla (0)
Bonobo (0)
Dog (0)
Squirrel (0)
Pig (0)
Green Monkey (0)
Naked Mole-rat (0)
All
Genes (5)
phagocytic vesicle lumen
Symbol
Object Name
Qualifiers
Evidence
Notes
Source
PubMed Reference(s)
RGD Reference(s)
Position
G
GNLY
granulysin
located_in
TAS
Reactome
Reactome:R-HSA-6807565 Reactome:R-HSA-6807578
NCBI chr 2:85,694,358...85,698,852
Ensembl chr 2:85,685,175...85,698,852
G
HGS
hepatocyte growth factor-regulated tyrosine kinase substrate
located_in
TAS
Reactome
Reactome:R-HSA-9635667
NCBI chr17:81,684,011...81,702,121
Ensembl chr17:81,683,326...81,703,138
G
LTF
lactotransferrin
located_in
TAS
Reactome
Reactome:R-HSA-1222491 Reactome:R-HSA-1222641 Reactome:R-HSA-8951549 Reactome:R-HSA-8951552
NCBI chr 3:46,435,645...46,485,234
Ensembl chr 3:46,435,645...46,485,234
G
MPO
myeloperoxidase
located_in
TAS
Reactome
Reactome:R-HSA-6789031 Reactome:R-HSA-6789126 Reactome:R-HSA-6789136 Reactome:R-HSA-8933635
NCBI chr17:58,269,855...58,280,935
Ensembl chr17:58,269,855...58,280,935
G
PGLYRP1
peptidoglycan recognition protein 1
located_in
TAS
Reactome
Reactome:R-HSA-6789072
NCBI chr19:46,019,153...46,023,053
Ensembl chr19:46,019,153...46,023,053
Term paths to the root
one shortest
all shortest
one longest
all longest
one shortest and longest
all
Path 1
Term
Annotations
cellular_component
21533
cellular anatomical structure
21182
cytoplasm
12969
cytoplasmic vesicle
2744
endocytic vesicle
387
phagocytic vesicle
162
phagocytic vesicle lumen
5
early phagosome lumen
0
phagolysosome vesicle lumen
0
Path 2
Term
Annotations
cellular_component
21533
cellular anatomical structure
21182
intracellular anatomical structure
17093
intracellular organelle
15360
intracellular membrane-bounded organelle
14188
intracellular vesicle
2753
cytoplasmic vesicle
2744
endocytic vesicle
387
phagocytic vesicle
162
phagocytic vesicle lumen
5
early phagosome lumen
0
phagolysosome vesicle lumen
0