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ONTOLOGY REPORT - ANNOTATIONS

Term:inflammatory response to wounding
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Accession:GO:0090594 term browser browse the term
Definition:The immediate defensive reaction by vertebrate tissue to injury caused by chemical or physical agents.


show annotations for term's descendants           Sort by:
inflammatory response to wounding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C5 complement C5 acts_upstream_of_or_within ISO (PMID:21148255) RGD PMID:21148255 NCBI chr 3:38,668,174...38,759,468
Ensembl chr 3:18,270,696...18,361,994 		JBrowse link
G Ccr2 C-C motif chemokine receptor 2 involved_in ISS
ISO		 GO_REF:0000024
(PMID:24806994), (PMID:29632244)		 UniProt
RGD		 PMID:24806994 PMID:29632244 GO_REF:0000024 NCBI chr 8:132,611,883...132,619,106
Ensembl chr 8:123,734,430...123,742,100 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:21148255) RGD PMID:21148255 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:27830702) RGD PMID:27830702 NCBI chr 4:5,889,999...5,894,575
Ensembl chr 4:5,213,394...5,219,178 		JBrowse link
G Mapk9 mitogen-activated protein kinase 9 involved_in ISO
IEA		 (PMID:27830702)
GO_REF:0000107		 RGD
Ensembl		 PMID:27830702 GO_REF:0000107 NCBI chr10:34,670,750...34,711,972
Ensembl chr10:34,169,675...34,210,178 		JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO (PMID:26776679) RGD PMID:26776679 NCBI chr11:58,251,720...58,279,767
Ensembl chr11:44,782,676...44,810,723 		JBrowse link
G Tlr3 toll-like receptor 3 involved_in ISO
IEA		 (PMID:27830702)
GO_REF:0000107		 RGD
Ensembl		 PMID:27830702 GO_REF:0000107 NCBI chr16:53,554,916...53,572,321
Ensembl chr16:46,822,039...46,836,545 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO
IEA		 (PMID:27830702)
GO_REF:0000107		 RGD
Ensembl		 PMID:27830702 GO_REF:0000107 NCBI chr20:3,626,685...3,629,303
Ensembl chr20:3,622,011...3,624,629 		JBrowse link
G Wdr83 WD repeat domain 83 acts_upstream_of_or_within ISO
IEA		 MGI:4367006 (PMID:25550320), (PMID:29402223)
GO_REF:0000107		 RGD
Ensembl		 PMID:25550320 PMID:29402223 GO_REF:0000107 NCBI chr19:39,981,890...39,987,443
Ensembl chr19:23,077,010...23,082,563 		JBrowse link
connective tissue replacement involved in inflammatory response wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec10a C-type lectin domain containing 10A acts_upstream_of_or_within ISO MGI:2183546 (PMID:15784728) RGD PMID:15784728 NCBI chr10:55,374,914...55,379,110
Ensembl chr10:54,876,260...54,880,435 		JBrowse link
G F2r coagulation factor II (thrombin) receptor involved_in ISO
ISS
IEA		 (PMID:9639571)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:9639571 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:28,604,066...28,620,579
Ensembl chr 2:26,868,404...26,885,870 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in IEA
ISO		 GO_REF:0000107
(PMID:18037992)		 Ensembl
RGD		 PMID:18037992 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Il1a interleukin 1 alpha acts_upstream_of_or_within ISO (PMID:15784728) RGD PMID:15784728 NCBI chr 3:136,979,804...136,990,236
Ensembl chr 3:116,526,604...116,536,822 		JBrowse link
G Lrrc25 leucine rich repeat containing 25 acts_upstream_of_or_within ISO (PMID:30340835) RGD PMID:30340835 NCBI chr16:18,840,867...18,847,722
Ensembl chr16:18,806,890...18,813,671 		JBrowse link
G Timp1 TIMP metallopeptidase inhibitor 1 acts_upstream_of_or_within ISO
IEA		 (PMID:23100531)
GO_REF:0000107		 RGD
Ensembl		 PMID:23100531 GO_REF:0000107 NCBI chr  X:3,766,509...3,772,578
Ensembl chr  X:1,212,972...1,217,664 		JBrowse link
negative regulation of connective tissue replacement involved in inflammatory response wound healing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr11:57,381,282...57,597,989
Ensembl chr11:43,913,043...44,128,929 		JBrowse link
G Ager advanced glycosylation end product-specific receptor acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr20:4,152,758...4,155,956
Ensembl chr20:4,147,890...4,151,078 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma acts_upstream_of_or_within IDA PMID:29695452 BHF-UCL PMID:29695452 RGD:150521636 NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
negative regulation of inflammatory response to wounding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd24 CD24 molecule involved_in ISO UniProtKB:Q80ZE3|UniProtKB:Q96LC7 (PMID:19264983) RGD PMID:19264983 NCBI chr20:48,655,549...48,661,786
Ensembl chr20:47,073,512...47,079,662 		JBrowse link
G Dsg2 desmoglein 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:38395410)		 Ensembl
RGD		 PMID:38395410 GO_REF:0000107 NCBI chr18:12,121,287...12,179,590
Ensembl chr18:11,846,183...11,904,156 		JBrowse link
G Extl3 exostosin-like glycosyltransferase 3 involved_in ISO
IEA		 (PMID:27830702)
GO_REF:0000107		 RGD
Ensembl		 PMID:27830702 GO_REF:0000107 NCBI chr15:43,469,293...43,559,760
Ensembl chr15:39,293,605...39,338,898 		JBrowse link
G Git1 GIT ArfGAP 1 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:32460388)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:32460388 GO_REF:0000024 GO_REF:0000107 NCBI chr10:62,840,165...62,854,508
Ensembl chr10:62,342,299...62,356,373 		JBrowse link
G Il17a interleukin 17A involved_in IEA
ISO		 GO_REF:0000107
(PMID:27830702)		 Ensembl
RGD		 PMID:27830702 GO_REF:0000107 NCBI chr 9:30,640,844...30,644,331
Ensembl chr 9:23,144,402...23,147,889 		JBrowse link
G Il33 interleukin 33 involved_in ISO (PMID:27830702) RGD PMID:27830702 NCBI chr 1:237,115,478...237,149,897
Ensembl chr 1:227,721,435...227,736,373 		JBrowse link
G Mdk midkine involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:17015789)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:17015789 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:98,356,789...98,358,960
Ensembl chr 3:77,901,158...77,903,130 		JBrowse link
G Ptpn6 protein tyrosine phosphatase, non-receptor type 6 involved_in ISO
IEA		 (PMID:27830702)
GO_REF:0000107		 RGD
Ensembl		 PMID:27830702 GO_REF:0000107 NCBI chr 4:159,212,320...159,237,069
Ensembl chr 4:157,526,035...157,550,984 		JBrowse link
G Reg3b regenerating family member 3 beta involved_in ISO (PMID:27830702) RGD PMID:27830702 NCBI chr 4:112,419,776...112,423,014
Ensembl chr 4:110,861,775...110,865,015 		JBrowse link
G Reg3g regenerating family member 3 gamma involved_in ISO
IEA		 (PMID:27830702)
GO_REF:0000107		 RGD
Ensembl		 PMID:27830702 GO_REF:0000107 NCBI chr 4:112,482,183...112,484,738
Ensembl chr 4:110,924,168...110,926,723 		JBrowse link
G Siglec10 sialic acid binding Ig-like lectin 10 involved_in ISO
IEA		 UniProtKB:P24807 (PMID:19264983)
GO_REF:0000107		 RGD
Ensembl		 PMID:19264983 GO_REF:0000107 NCBI chr 1:102,953,894...102,962,964
Ensembl chr 1:93,817,335...93,825,931 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in ISO
IEA		 (PMID:27830702)
GO_REF:0000107		 RGD
Ensembl		 PMID:27830702 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
positive regulation of inflammatory response to wounding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd24 CD24 molecule involved_in ISO (PMID:19264983) RGD PMID:19264983 NCBI chr20:48,655,549...48,661,786
Ensembl chr20:47,073,512...47,079,662 		JBrowse link
G Grn granulin precursor involved_in ISS
ISO		 GO_REF:0000024
(PMID:12524533)		 UniProt
RGD		 PMID:12524533 GO_REF:0000024 NCBI chr10:87,887,834...87,893,938
Ensembl chr10:87,387,638...87,393,775 		JBrowse link
G Mdk midkine involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:24458438), (PMID:28183532)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:24458438 PMID:28183532 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:98,356,789...98,358,960
Ensembl chr 3:77,901,158...77,903,130 		JBrowse link
regulation of inflammatory response to wounding term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alox5 arachidonate 5-lipoxygenase involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:28965882)		 Ensembl
UniProt
RGD		 PMID:28965882 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:151,203,948...151,251,126
Ensembl chr 4:149,531,515...149,578,743 		JBrowse link
wound healing involved in inflammatory response term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cd44 CD44 molecule acts_upstream_of_or_within ISO MGI:2181292 (PMID:11935029) RGD PMID:11935029 NCBI chr 3:109,610,824...109,699,776
Ensembl chr 3:89,157,058...89,244,620 		JBrowse link
G Hmox1 heme oxygenase 1 involved_in ISO
IEA		 (PMID:9884342)
GO_REF:0000107		 RGD
Ensembl		 PMID:9884342 GO_REF:0000107 NCBI chr19:13,452,365...13,479,823
Ensembl chr19:13,467,244...13,474,079 		JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma acts_upstream_of_or_within_negative_effect ISO (PMID:21880694) RGD PMID:21880694 NCBI chr 4:150,095,743...150,221,104
Ensembl chr 4:148,423,194...148,548,468 		JBrowse link
G Tlr4 toll-like receptor 4 involved_in IEA
ISO		 GO_REF:0000107
(PMID:21880694)		 Ensembl
RGD		 PMID:21880694 GO_REF:0000107 NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:80,145,826...80,159,628 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20558
    response to stimulus 11067
      response to stress 4344
        response to wounding 623
          inflammatory response to wounding 35
            negative regulation of inflammatory response to wounding 12
            positive regulation of inflammatory response to wounding 3
            regulation of inflammatory response to wounding + 14
            wound healing involved in inflammatory response + 12
Path 2
Term Annotations click to browse term
  biological_process 20558
    response to stimulus 11067
      response to stress 4344
        defense response 1952
          inflammatory response 900
            inflammatory response to wounding 35
              negative regulation of inflammatory response to wounding 12
              positive regulation of inflammatory response to wounding 3
              regulation of inflammatory response to wounding + 14
              wound healing involved in inflammatory response + 12
paths to the root